Wall clock time and date at job start Fri Apr 10 2020 22:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30455 * 125.98657 * 2 1 4 4 N 1.39932 * 108.91065 * 180.23678 * 3 2 1 5 5 C 1.46500 * 125.75546 * 179.69438 * 4 3 2 6 6 C 1.34307 * 108.48881 * 359.73306 * 4 3 2 7 7 C 1.38107 * 107.40219 * 0.02562 * 6 4 3 8 8 C 1.47555 * 126.41940 * 179.97438 * 7 6 4 9 9 O 1.21761 * 119.99849 * 180.02562 * 8 7 6 10 10 C 1.46358 * 119.99936 * 0.02562 * 8 7 6 11 11 C 1.34951 * 120.00090 * 180.27843 * 10 8 7 12 12 C 1.47163 * 120.00306 * 179.72589 * 11 10 8 13 13 C 1.39939 * 120.13765 * 0.02562 * 12 11 10 14 14 C 1.37918 * 119.96379 * 180.02562 * 13 12 11 15 15 C 1.38297 * 120.24515 * 359.97119 * 14 13 12 16 16 C 1.39007 * 120.28590 * 0.02562 * 15 14 13 17 17 O 1.35760 * 119.98476 * 180.02562 * 16 15 14 18 18 C 1.34829 * 117.00182 * 174.48456 * 17 16 15 19 19 H 1.08007 * 119.99978 * 5.07469 * 18 17 16 20 20 C 1.38655 * 120.00201 * 185.07787 * 18 17 16 21 21 N 1.31557 * 120.00153 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99759 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47287 * 89.99888 * 22 20 18 24 24 H 1.48507 * 109.46886 * 209.99912 * 22 20 18 25 25 H 1.48497 * 109.47092 * 329.99655 * 22 20 18 26 26 C 1.38564 * 120.03243 * 359.72079 * 16 15 14 27 27 H 1.09005 * 109.47394 * 270.20258 * 1 2 3 28 28 H 1.09003 * 109.46870 * 30.20192 * 1 2 3 29 29 H 1.09000 * 109.47499 * 150.20395 * 1 2 3 30 30 H 1.09000 * 109.47341 * 270.04577 * 5 4 3 31 31 H 1.09008 * 109.47019 * 30.04513 * 5 4 3 32 32 H 1.08999 * 109.46853 * 150.04165 * 5 4 3 33 33 H 1.08005 * 126.29983 * 179.97438 * 6 4 3 34 34 H 1.08000 * 119.99926 * 0.02562 * 10 8 7 35 35 H 1.08000 * 119.99927 * 359.72645 * 11 10 8 36 36 H 1.08001 * 120.02280 * 0.02562 * 13 12 11 37 37 H 1.07999 * 119.88220 * 180.02562 * 14 13 12 38 38 H 1.08005 * 119.85881 * 180.02562 * 15 14 13 39 39 H 0.97003 * 120.00140 * 179.97438 * 21 20 18 40 40 H 1.07998 * 120.12616 * 180.29256 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2735 1.0556 0.0000 4 7 3.6111 0.6447 -0.0055 5 6 4.7785 1.5298 -0.0136 6 6 3.6443 -0.6980 -0.0029 7 6 2.3370 -1.1434 0.0036 8 6 1.8908 -2.5498 0.0078 9 8 0.7015 -2.8112 0.0130 10 6 2.8776 -3.6307 0.0057 11 6 2.4695 -4.9170 0.0039 12 6 3.4617 -6.0038 -0.0043 13 6 4.8292 -5.7067 -0.0096 14 6 5.7559 -6.7281 -0.0178 15 6 5.3393 -8.0468 -0.0202 16 6 3.9835 -8.3536 -0.0149 17 8 3.5813 -9.6503 -0.0167 18 6 2.2584 -9.8810 0.1042 19 1 1.5646 -9.0534 0.1142 20 6 1.7887 -11.1808 0.2156 21 7 0.4979 -11.4059 0.3340 22 14 2.9888 -12.6122 0.1990 23 1 3.4199 -12.9129 1.5879 24 1 2.3262 -13.8069 -0.3833 25 1 4.1742 -12.2548 -0.6208 26 6 3.0424 -7.3367 -0.0013 27 1 -0.3634 0.0036 1.0277 28 1 -0.3633 0.8882 -0.5170 29 1 -0.3634 -0.8918 -0.5106 30 1 5.0625 1.7472 -1.0432 31 1 4.5330 2.4596 0.4997 32 1 5.6084 1.0412 0.4969 33 1 4.5302 -1.3157 -0.0062 34 1 3.9324 -3.3988 0.0015 35 1 1.4147 -5.1489 0.0084 36 1 5.1587 -4.6782 -0.0074 37 1 6.8110 -6.4973 -0.0215 38 1 6.0704 -8.8417 -0.0262 39 1 0.1693 -12.3153 0.4116 40 1 1.9887 -7.5734 0.0076 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727744719.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:14 Heat of formation + Delta-G solvation = 54.935423 kcal Electronic energy + Delta-G solvation = -23613.203587 eV Core-core repulsion = 19975.174570 eV Total energy + Delta-G solvation = -3638.029017 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.56990 -39.36536 -38.70054 -36.89728 -34.25618 -33.54826 -32.37987 -31.21362 -29.78969 -29.59105 -28.80020 -26.40442 -25.30262 -24.18135 -22.36564 -21.69780 -20.77885 -19.71873 -18.68763 -17.86643 -17.53482 -16.83315 -16.00287 -15.83016 -15.39162 -15.04419 -14.71325 -14.24443 -14.17078 -13.99309 -13.91050 -13.67171 -13.49505 -13.41151 -12.99690 -12.81365 -12.39838 -12.37256 -12.26775 -12.21128 -11.84896 -11.83194 -11.12557 -10.98128 -10.93204 -10.72118 -10.26939 -9.86591 -9.63691 -9.57124 -9.47407 -8.92254 -8.85519 -7.98059 -7.49688 -6.46398 -4.14469 0.63259 1.39979 1.96095 2.07630 2.10572 2.64509 3.18761 3.22466 3.36183 3.58892 4.02696 4.18896 4.27627 4.42091 4.43101 4.64888 4.69873 4.74140 4.95247 5.00796 5.04170 5.12484 5.23906 5.30859 5.50918 5.56357 5.59130 5.68629 5.78128 5.87103 5.88044 5.99787 6.24135 6.35379 6.44613 6.48600 6.56457 6.65366 6.93911 7.03187 7.15942 7.36748 7.44672 7.70560 7.81529 7.95804 8.87860 9.47412 10.60883 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.023369 B = 0.002485 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.898576 B =11266.700801 C =12440.467877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.126 3.874 3 N -0.308 5.308 4 N -0.365 5.365 5 C 0.097 3.903 6 C 0.113 3.887 7 C -0.305 4.305 8 C 0.458 3.542 9 O -0.473 6.473 10 C -0.254 4.254 11 C 0.010 3.990 12 C -0.049 4.049 13 C -0.180 4.180 14 C -0.085 4.085 15 C -0.176 4.176 16 C 0.152 3.848 17 O -0.214 6.214 18 C -0.394 4.394 19 H 0.107 0.893 20 C 0.065 3.935 21 N -0.875 5.875 22 Si 0.906 3.094 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.259 1.259 26 C -0.188 4.188 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.187 0.813 34 H 0.127 0.873 35 H 0.132 0.868 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.281 0.719 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.811 21.916 -0.602 24.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.041 4.041 3 N -0.130 5.130 4 N -0.143 5.143 5 C -0.044 4.044 6 C -0.038 4.038 7 C -0.318 4.318 8 C 0.340 3.660 9 O -0.352 6.352 10 C -0.272 4.272 11 C -0.009 4.009 12 C -0.049 4.049 13 C -0.198 4.198 14 C -0.103 4.103 15 C -0.195 4.195 16 C 0.100 3.900 17 O -0.119 6.119 18 C -0.469 4.469 19 H 0.125 0.875 20 C -0.139 4.139 21 N -0.513 5.513 22 Si 0.731 3.269 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.184 1.184 26 C -0.207 4.207 27 H 0.099 0.901 28 H 0.089 0.911 29 H 0.113 0.887 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.204 0.796 34 H 0.145 0.855 35 H 0.149 0.851 36 H 0.131 0.869 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.091 0.909 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 9.310 22.789 -0.597 24.624 hybrid contribution 0.640 -1.435 0.036 1.572 sum 9.950 21.354 -0.561 23.565 Atomic orbital electron populations 1.20356 0.85729 1.04041 1.03586 1.22598 0.97291 0.89223 0.94945 1.77170 0.86014 1.22800 1.27004 1.48373 1.06162 1.04927 1.54860 1.21984 0.83817 0.94736 1.03861 1.23227 0.99304 0.84865 0.96405 1.20882 0.92171 0.96111 1.22613 1.19414 0.88291 0.86517 0.71751 1.90616 1.19130 1.86029 1.39409 1.23217 0.99941 0.93370 1.10708 1.22697 0.99554 0.91892 0.86722 1.18739 0.92706 0.92242 1.01230 1.20868 0.92006 0.98355 1.08610 1.20583 0.98582 0.91833 0.99282 1.20404 0.93196 0.96662 1.09241 1.18997 0.92601 0.84462 0.93914 1.83590 1.27544 1.20610 1.80192 1.20766 0.78496 0.95691 1.51947 0.87540 1.24473 0.96157 0.97812 0.95458 1.69647 1.12147 1.22580 1.46900 0.86178 0.81119 0.80377 0.79200 1.19835 1.20713 1.18356 1.21558 1.00986 0.91193 1.07010 0.90147 0.91078 0.88664 0.90243 0.88949 0.88993 0.79635 0.85524 0.85053 0.86851 0.86470 0.86269 0.90926 0.84292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 9.92 36.00 0.36 -0.50 16 2 C 0.13 1.61 7.26 -82.02 -0.60 1.01 16 3 N -0.31 -3.78 12.50 33.90 0.42 -3.35 16 4 N -0.37 -3.37 3.98 -67.56 -0.27 -3.64 16 5 C 0.10 0.42 11.44 59.85 0.68 1.10 16 6 C 0.11 1.03 10.96 -16.52 -0.18 0.85 16 7 C -0.31 -3.77 6.12 -104.99 -0.64 -4.42 16 8 C 0.46 6.45 7.09 -32.52 -0.23 6.22 16 9 O -0.47 -7.92 14.81 5.13 0.08 -7.84 16 10 C -0.25 -3.32 9.06 -37.48 -0.34 -3.66 16 11 C 0.01 0.15 9.46 -37.13 -0.35 -0.20 16 12 C -0.05 -0.85 5.87 -105.08 -0.62 -1.46 16 13 C -0.18 -2.70 9.41 -39.06 -0.37 -3.07 16 14 C -0.08 -1.29 10.02 -39.68 -0.40 -1.69 16 15 C -0.18 -3.23 9.98 -39.27 -0.39 -3.62 16 16 C 0.15 3.36 6.64 -39.18 -0.26 3.10 16 17 O -0.21 -5.47 8.58 0.02 0.00 -5.47 16 18 C -0.39 -10.84 9.94 30.89 0.31 -10.53 16 19 H 0.11 3.00 5.43 -52.48 -0.28 2.71 16 20 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 21 N -0.88 -24.99 13.96 55.48 0.77 -24.21 16 22 Si 0.91 21.22 28.62 -169.99 -4.86 16.36 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.26 -6.07 7.11 56.52 0.40 -5.67 16 26 C -0.19 -3.90 8.91 -38.90 -0.35 -4.25 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.09 1.14 6.55 -51.93 -0.34 0.80 16 30 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.09 0.36 8.14 -51.92 -0.42 -0.06 16 32 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.19 0.97 7.36 -52.48 -0.39 0.58 16 34 H 0.13 1.29 5.18 -52.49 -0.27 1.01 16 35 H 0.13 2.14 7.52 -52.49 -0.39 1.74 16 36 H 0.11 1.31 6.16 -52.49 -0.32 0.99 16 37 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 38 H 0.12 2.02 8.06 -52.48 -0.42 1.60 16 39 H 0.28 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.14 3.06 5.63 -52.49 -0.30 2.76 16 LS Contribution 350.34 15.07 5.28 5.28 Total: -1.00 -33.06 350.34 -6.44 -39.50 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -4.39 Total: 2.81 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -3.47 Total: -19.43 kcal Atomic # 7 Polarization: -32.13 SS G_CDS: 0.93 Total: -31.20 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.08 Total: -13.31 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.86 Total: 16.36 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.06 -6.44 -39.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727744719.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.433 kcal (2) G-P(sol) polarization free energy of solvation -33.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds