Wall clock time and date at job start Fri Apr 10 2020 22:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30455 * 125.98657 * 2 1 4 4 N 1.39932 * 108.91065 * 180.23678 * 3 2 1 5 5 C 1.46500 * 125.75546 * 179.69438 * 4 3 2 6 6 C 1.34307 * 108.48881 * 359.73306 * 4 3 2 7 7 C 1.38107 * 107.40219 * 0.02562 * 6 4 3 8 8 C 1.47555 * 126.41940 * 179.97438 * 7 6 4 9 9 O 1.21761 * 119.99849 * 180.02562 * 8 7 6 10 10 C 1.46358 * 119.99936 * 0.02562 * 8 7 6 11 11 C 1.34951 * 120.00090 * 180.27843 * 10 8 7 12 12 C 1.47163 * 120.00306 * 179.72589 * 11 10 8 13 13 C 1.39939 * 120.13765 * 0.02562 * 12 11 10 14 14 C 1.37918 * 119.96379 * 180.02562 * 13 12 11 15 15 C 1.38297 * 120.24515 * 359.97119 * 14 13 12 16 16 C 1.39007 * 120.28590 * 0.02562 * 15 14 13 17 17 O 1.35760 * 119.98476 * 180.02562 * 16 15 14 18 18 C 1.34829 * 117.00182 * 174.48456 * 17 16 15 19 19 H 1.08007 * 119.99978 * 5.07469 * 18 17 16 20 20 C 1.38655 * 120.00201 * 185.07787 * 18 17 16 21 21 N 1.31557 * 120.00153 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99759 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.47287 * 89.99888 * 22 20 18 24 24 H 1.48507 * 109.46886 * 209.99912 * 22 20 18 25 25 H 1.48497 * 109.47092 * 329.99655 * 22 20 18 26 26 C 1.38564 * 120.03243 * 359.72079 * 16 15 14 27 27 H 1.09005 * 109.47394 * 270.20258 * 1 2 3 28 28 H 1.09003 * 109.46870 * 30.20192 * 1 2 3 29 29 H 1.09000 * 109.47499 * 150.20395 * 1 2 3 30 30 H 1.09000 * 109.47341 * 270.04577 * 5 4 3 31 31 H 1.09008 * 109.47019 * 30.04513 * 5 4 3 32 32 H 1.08999 * 109.46853 * 150.04165 * 5 4 3 33 33 H 1.08005 * 126.29983 * 179.97438 * 6 4 3 34 34 H 1.08000 * 119.99926 * 0.02562 * 10 8 7 35 35 H 1.08000 * 119.99927 * 359.72645 * 11 10 8 36 36 H 1.08001 * 120.02280 * 0.02562 * 13 12 11 37 37 H 1.07999 * 119.88220 * 180.02562 * 14 13 12 38 38 H 1.08005 * 119.85881 * 180.02562 * 15 14 13 39 39 H 0.97003 * 120.00140 * 179.97438 * 21 20 18 40 40 H 1.07998 * 120.12616 * 180.29256 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2735 1.0556 0.0000 4 7 3.6111 0.6447 -0.0055 5 6 4.7785 1.5298 -0.0136 6 6 3.6443 -0.6980 -0.0029 7 6 2.3370 -1.1434 0.0036 8 6 1.8908 -2.5498 0.0078 9 8 0.7015 -2.8112 0.0130 10 6 2.8776 -3.6307 0.0057 11 6 2.4695 -4.9170 0.0039 12 6 3.4617 -6.0038 -0.0043 13 6 4.8292 -5.7067 -0.0096 14 6 5.7559 -6.7281 -0.0178 15 6 5.3393 -8.0468 -0.0202 16 6 3.9835 -8.3536 -0.0149 17 8 3.5813 -9.6503 -0.0167 18 6 2.2584 -9.8810 0.1042 19 1 1.5646 -9.0534 0.1142 20 6 1.7887 -11.1808 0.2156 21 7 0.4979 -11.4059 0.3340 22 14 2.9888 -12.6122 0.1990 23 1 3.4199 -12.9129 1.5879 24 1 2.3262 -13.8069 -0.3833 25 1 4.1742 -12.2548 -0.6208 26 6 3.0424 -7.3367 -0.0013 27 1 -0.3634 0.0036 1.0277 28 1 -0.3633 0.8882 -0.5170 29 1 -0.3634 -0.8918 -0.5106 30 1 5.0625 1.7472 -1.0432 31 1 4.5330 2.4596 0.4997 32 1 5.6084 1.0412 0.4969 33 1 4.5302 -1.3157 -0.0062 34 1 3.9324 -3.3988 0.0015 35 1 1.4147 -5.1489 0.0084 36 1 5.1587 -4.6782 -0.0074 37 1 6.8110 -6.4973 -0.0215 38 1 6.0704 -8.8417 -0.0262 39 1 0.1693 -12.3153 0.4116 40 1 1.9887 -7.5734 0.0076 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727744719.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:13 Heat of formation + Delta-G solvation = 34.279033 kcal Electronic energy + Delta-G solvation = -23614.099315 eV Core-core repulsion = 19975.174570 eV Total energy + Delta-G solvation = -3638.924745 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.36394 -40.90686 -39.88749 -38.44937 -35.05864 -34.82109 -34.30414 -32.17036 -31.11648 -30.35212 -30.15548 -27.39599 -26.99516 -25.26210 -23.33189 -23.20118 -21.86679 -20.63807 -20.11583 -19.51031 -18.78768 -17.96420 -17.04015 -16.80889 -16.69981 -16.27667 -15.98122 -15.71769 -15.51027 -15.25219 -15.19541 -14.95657 -14.46504 -14.30762 -14.14883 -14.05523 -13.89637 -13.43774 -13.34208 -13.19307 -13.00573 -12.94066 -12.69340 -12.53120 -12.12550 -11.98003 -11.89573 -11.40100 -11.21398 -10.83271 -10.66763 -10.35651 -9.69349 -9.39100 -8.98512 -8.50189 -6.24268 -0.55532 0.50698 0.67942 0.95424 1.31619 1.35781 1.47817 1.50079 1.52685 2.27897 2.51745 2.81800 3.05789 3.12696 3.19618 3.46257 3.77573 3.94714 4.02076 4.10685 4.21926 4.40238 4.42187 4.44747 4.46742 4.49029 4.60227 4.63207 4.70809 4.74936 4.93617 4.95614 4.98975 5.10561 5.19499 5.33782 5.45522 5.49425 5.60975 5.74671 5.79076 5.90420 5.94943 6.21527 6.55123 6.76003 6.83621 7.56940 8.61681 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.023369 B = 0.002485 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.898576 B =11266.700801 C =12440.467877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.108 3.892 3 N -0.335 5.335 4 N -0.360 5.360 5 C 0.085 3.915 6 C 0.142 3.858 7 C -0.343 4.343 8 C 0.453 3.547 9 O -0.513 6.513 10 C -0.209 4.209 11 C -0.027 4.027 12 C -0.046 4.046 13 C -0.153 4.153 14 C -0.069 4.069 15 C -0.178 4.178 16 C 0.113 3.887 17 O -0.244 6.244 18 C -0.401 4.401 19 H 0.076 0.924 20 C 0.007 3.993 21 N -0.926 5.926 22 Si 0.975 3.025 23 H -0.265 1.265 24 H -0.269 1.269 25 H -0.259 1.259 26 C -0.220 4.220 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.128 0.872 33 H 0.238 0.762 34 H 0.175 0.825 35 H 0.103 0.897 36 H 0.170 0.830 37 H 0.173 0.827 38 H 0.133 0.867 39 H 0.285 0.715 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.400 24.930 -0.630 29.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.059 4.059 3 N -0.158 5.158 4 N -0.136 5.136 5 C -0.054 4.054 6 C -0.012 4.012 7 C -0.355 4.355 8 C 0.338 3.662 9 O -0.395 6.395 10 C -0.227 4.227 11 C -0.046 4.046 12 C -0.046 4.046 13 C -0.171 4.171 14 C -0.086 4.086 15 C -0.197 4.197 16 C 0.064 3.936 17 O -0.152 6.152 18 C -0.477 4.477 19 H 0.094 0.906 20 C -0.191 4.191 21 N -0.566 5.566 22 Si 0.797 3.203 23 H -0.190 1.190 24 H -0.194 1.194 25 H -0.183 1.183 26 C -0.240 4.240 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.113 0.887 31 H 0.111 0.889 32 H 0.146 0.854 33 H 0.254 0.746 34 H 0.192 0.808 35 H 0.121 0.879 36 H 0.187 0.813 37 H 0.190 0.810 38 H 0.151 0.849 39 H 0.094 0.906 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 14.938 25.882 -0.627 29.890 hybrid contribution -0.912 -1.789 0.032 2.009 sum 14.026 24.093 -0.595 27.885 Atomic orbital electron populations 1.20310 0.85912 1.03731 1.03648 1.22795 0.97836 0.89883 0.95368 1.77116 0.87773 1.23066 1.27845 1.48821 1.06106 1.05857 1.52862 1.22456 0.82857 0.94597 1.05476 1.23886 0.99330 0.85056 0.92889 1.20823 0.93970 0.94748 1.25981 1.19831 0.87870 0.87850 0.70660 1.90619 1.20958 1.86705 1.41211 1.23543 1.01833 0.91445 1.05881 1.22450 0.98289 0.92912 0.90961 1.18913 0.94703 0.90692 1.00303 1.21531 0.90093 1.01237 1.04211 1.21216 1.01374 0.89877 0.96144 1.20822 0.91389 0.99140 1.08372 1.19617 0.94631 0.83503 0.95862 1.83520 1.25622 1.22762 1.83281 1.20666 0.79619 0.95296 1.52128 0.90643 1.25348 0.97939 1.00434 0.95380 1.69748 1.13932 1.23352 1.49615 0.85155 0.78629 0.77059 0.79474 1.18956 1.19352 1.18338 1.21481 0.99332 0.93401 1.09753 0.89947 0.89890 0.90365 0.88708 0.88917 0.85353 0.74604 0.80778 0.87860 0.81271 0.80964 0.84880 0.90574 0.88029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.75 9.92 71.23 0.71 -1.05 16 2 C 0.11 2.63 7.26 43.51 0.32 2.94 16 3 N -0.34 -7.53 12.50 -46.68 -0.58 -8.12 16 4 N -0.36 -5.06 3.98 -367.67 -1.46 -6.52 16 5 C 0.08 0.29 11.44 127.77 1.46 1.75 16 6 C 0.14 1.81 10.96 84.28 0.92 2.73 16 7 C -0.34 -7.60 6.12 -20.10 -0.12 -7.72 16 8 C 0.45 12.16 7.09 26.84 0.19 12.35 16 9 O -0.51 -17.90 14.81 -4.54 -0.07 -17.97 16 10 C -0.21 -4.75 9.06 23.63 0.21 -4.53 16 11 C -0.03 -0.84 9.46 23.86 0.23 -0.61 16 12 C -0.05 -1.54 5.87 -20.16 -0.12 -1.65 16 13 C -0.15 -3.70 9.41 22.61 0.21 -3.48 16 14 C -0.07 -1.68 10.02 22.21 0.22 -1.46 16 15 C -0.18 -6.15 9.98 22.47 0.22 -5.92 16 16 C 0.11 5.12 6.64 22.53 0.15 5.27 16 17 O -0.24 -13.16 8.58 -22.84 -0.20 -13.36 16 18 C -0.40 -23.95 9.94 67.92 0.68 -23.27 16 19 H 0.08 4.80 5.43 -2.91 -0.02 4.78 16 20 C 0.01 0.42 5.49 84.83 0.47 0.88 16 21 N -0.93 -56.43 13.96 21.61 0.30 -56.13 16 22 Si 0.98 45.52 28.62 68.60 1.96 47.49 16 23 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 25 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 26 C -0.22 -9.72 8.91 22.71 0.20 -9.52 16 27 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 28 H 0.08 1.58 8.14 -2.39 -0.02 1.57 16 29 H 0.08 2.02 6.55 -2.39 -0.02 2.00 16 30 H 0.09 0.11 8.14 -2.39 -0.02 0.09 16 31 H 0.09 0.36 8.14 -2.38 -0.02 0.34 16 32 H 0.13 -0.44 8.14 -2.39 -0.02 -0.46 16 33 H 0.24 0.35 7.36 -2.91 -0.02 0.33 16 34 H 0.18 2.15 5.18 -2.91 -0.02 2.13 16 35 H 0.10 3.72 7.52 -2.91 -0.02 3.70 16 36 H 0.17 2.25 6.16 -2.91 -0.02 2.24 16 37 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 38 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16 39 H 0.28 15.88 8.31 -92.71 -0.77 15.11 16 40 H 0.10 5.14 5.63 -2.91 -0.02 5.12 16 Total: -1.00 -82.99 350.34 6.99 -76.01 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 1.08 Total: 11.90 kcal Atomic # 6 Polarization: -39.25 SS G_CDS: 5.95 Total: -33.30 kcal Atomic # 7 Polarization: -69.02 SS G_CDS: -1.75 Total: -70.77 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -0.26 Total: -31.33 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.96 Total: 47.49 kcal Total: -82.99 6.99 -76.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727744719.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.285 kcal (2) G-P(sol) polarization free energy of solvation -82.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds