Wall clock time and date at job start Fri Apr 10 2020 22:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00389 * 2 1 4 4 H 1.48502 * 109.47034 * 270.00197 * 3 2 1 5 5 H 1.48500 * 109.46779 * 29.99542 * 3 2 1 6 6 H 1.48494 * 109.47307 * 150.00033 * 3 2 1 7 7 C 1.37880 * 119.99746 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99698 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99943 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46907 * 179.97438 * 9 7 2 11 11 C 1.46504 * 119.99240 * 90.00558 * 10 9 7 12 12 C 1.50707 * 109.46935 * 90.00317 * 11 10 9 13 13 C 1.38227 * 119.62059 * 95.01845 * 12 11 10 14 14 C 1.38627 * 119.15702 * 179.74122 * 13 12 11 15 15 C 1.38669 * 118.42389 * 0.47826 * 14 13 12 16 16 C 1.38186 * 119.16143 * 359.49762 * 15 14 13 17 17 N 1.31856 * 119.61137 * 274.99275 * 12 11 10 18 18 C 1.34776 * 120.00348 * 270.00368 * 10 9 7 19 19 O 1.21775 * 119.99626 * 180.02562 * 18 10 9 20 20 C 1.41546 * 120.00054 * 0.02562 * 18 10 9 21 21 C 1.35618 * 120.00274 * 179.97438 * 20 18 10 22 22 C 1.41609 * 120.00532 * 179.97438 * 21 20 18 23 23 C 1.37948 * 126.10925 * 180.02562 * 22 21 20 24 24 C 1.40310 * 106.53157 * 179.97438 * 23 22 21 25 25 C 1.35156 * 107.20555 * 359.97438 * 24 23 22 26 26 O 1.34021 * 109.03244 * 359.75422 * 25 24 23 27 27 H 0.97001 * 119.99623 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46778 * 60.00725 * 9 7 2 29 29 H 1.08999 * 109.47563 * 300.00499 * 9 7 2 30 30 H 1.08997 * 109.47679 * 329.99784 * 11 10 9 31 31 H 1.09003 * 109.46652 * 209.99744 * 11 10 9 32 32 H 1.07998 * 120.41916 * 359.95342 * 13 12 11 33 33 H 1.08008 * 120.78688 * 180.22921 * 14 13 12 34 34 H 1.08002 * 120.42244 * 179.78279 * 15 14 13 35 35 H 1.07996 * 119.61757 * 180.25243 * 16 15 14 36 36 H 1.08010 * 120.00067 * 359.97438 * 20 18 10 37 37 H 1.08008 * 119.99959 * 0.02562 * 21 20 18 38 38 H 1.08006 * 126.73031 * 359.97438 * 23 22 21 39 39 H 1.08005 * 126.39719 * 179.97438 * 24 23 22 40 40 H 1.08002 * 125.48177 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 7 2.2029 -3.6127 0.0015 11 6 2.6797 -4.1689 1.2702 12 6 1.7632 -5.2830 1.7063 13 6 2.0800 -6.5911 1.3912 14 6 1.2329 -7.6087 1.8018 15 6 0.0887 -7.2704 2.5084 16 6 -0.1620 -5.9404 2.7869 17 7 0.6688 -4.9985 2.3844 18 6 2.6400 -4.1255 -1.1658 19 8 3.4310 -5.0514 -1.1658 20 6 2.1797 -3.5877 -2.3916 21 6 2.6199 -4.1033 -3.5661 22 6 2.1590 -3.5657 -4.7925 23 6 2.5213 -3.9910 -6.0538 24 6 1.8261 -3.1800 -6.9635 25 6 1.0841 -2.3125 -6.2398 26 8 1.2818 -2.5505 -4.9358 27 1 -0.4849 0.8401 -0.0004 28 1 0.6241 -2.5575 -0.8881 29 1 0.6245 -2.5563 0.8919 30 1 2.6880 -3.3870 2.0295 31 1 3.6891 -4.5590 1.1393 32 1 2.9777 -6.8176 0.8352 33 1 1.4568 -8.6403 1.5732 34 1 -0.5955 -8.0371 2.8408 35 1 -1.0488 -5.6689 3.3403 36 1 1.4779 -2.7668 -2.3915 37 1 3.3215 -4.9245 -3.5663 38 1 3.2057 -4.7913 -6.2938 39 1 1.8748 -3.2380 -8.0409 40 1 0.4336 -1.5525 -6.6469 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728871281.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:16 Heat of formation + Delta-G solvation = 39.773171 kcal Electronic energy + Delta-G solvation = -24840.411866 eV Core-core repulsion = 21201.725365 eV Total energy + Delta-G solvation = -3638.686501 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.34224 -40.08497 -39.06174 -35.23232 -33.83691 -32.90639 -32.70475 -32.17306 -31.42878 -28.85919 -27.53056 -26.25657 -23.71937 -23.26607 -22.73622 -21.80338 -21.53482 -19.99653 -18.02995 -17.40023 -16.83039 -16.47723 -16.29045 -15.86372 -15.68976 -15.58830 -15.23368 -14.49360 -14.33634 -14.16496 -13.65489 -13.09092 -13.01710 -12.84163 -12.68732 -12.64929 -12.35947 -12.12830 -11.84216 -11.55258 -11.50450 -11.16783 -10.89047 -10.64387 -10.31924 -10.12887 -9.78081 -9.75756 -9.64252 -9.34207 -9.13291 -8.76196 -8.48548 -7.90641 -7.58165 -6.12346 -4.19369 0.81137 1.31166 1.52286 2.33290 2.92964 3.16784 3.27064 3.33657 3.37180 3.78823 4.01726 4.29588 4.39707 4.62702 4.93182 4.98156 5.05299 5.05391 5.13107 5.21471 5.26558 5.39109 5.55527 5.65833 5.79489 5.82336 5.87186 5.94785 6.02572 6.22585 6.29449 6.31991 6.36885 6.41195 6.58116 6.68268 6.84630 6.93193 7.24623 7.29593 7.54714 7.82056 8.10180 8.25189 8.34795 8.80201 8.95265 9.47436 10.94568 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.008345 B = 0.005238 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3354.299706 B = 5344.179038 C = 7828.824677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.066 3.934 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.537 4.537 8 H 0.061 0.939 9 C 0.235 3.765 10 N -0.577 5.577 11 C 0.167 3.833 12 C 0.120 3.880 13 C -0.152 4.152 14 C -0.084 4.084 15 C -0.182 4.182 16 C 0.095 3.905 17 N -0.464 5.464 18 C 0.546 3.454 19 O -0.578 6.578 20 C -0.160 4.160 21 C -0.036 4.036 22 C 0.017 3.983 23 C -0.188 4.188 24 C -0.220 4.220 25 C -0.030 4.030 26 O -0.158 6.158 27 H 0.264 0.736 28 H 0.037 0.963 29 H 0.049 0.951 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.139 0.861 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.152 0.848 36 H 0.146 0.854 37 H 0.154 0.846 38 H 0.151 0.849 39 H 0.148 0.852 40 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.876 -10.916 -4.922 12.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.137 4.137 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.576 4.576 8 H 0.079 0.921 9 C 0.116 3.884 10 N -0.306 5.306 11 C 0.042 3.958 12 C -0.019 4.019 13 C -0.172 4.172 14 C -0.110 4.110 15 C -0.202 4.202 16 C -0.063 4.063 17 N -0.173 5.173 18 C 0.338 3.662 19 O -0.462 6.462 20 C -0.180 4.180 21 C -0.056 4.056 22 C -0.033 4.033 23 C -0.208 4.208 24 C -0.240 4.240 25 C -0.100 4.100 26 O -0.052 6.052 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.116 0.884 31 H 0.109 0.891 32 H 0.156 0.844 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.170 0.830 36 H 0.164 0.836 37 H 0.172 0.828 38 H 0.169 0.831 39 H 0.166 0.834 40 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 0.773 -10.184 -4.424 11.131 hybrid contribution 0.389 0.142 -0.438 0.603 sum 1.162 -10.042 -4.863 11.218 Atomic orbital electron populations 1.69937 1.05973 1.27193 1.49606 1.24921 0.94828 0.99194 0.94751 0.86523 0.79864 0.83027 0.78228 1.20545 1.21088 1.19773 1.21476 0.93569 0.90409 1.52115 0.92063 1.19586 0.87495 0.82108 0.99256 1.48152 1.44886 1.33968 1.03560 1.20161 0.94843 0.93564 0.87217 1.21872 0.92985 0.94064 0.92952 1.22134 1.01460 0.93371 1.00235 1.21545 0.93934 0.99604 0.95910 1.22090 0.98639 0.98088 1.01350 1.22767 0.97917 0.88841 0.96766 1.67598 1.02866 1.37354 1.09511 1.16988 0.81424 0.82791 0.85001 1.90698 1.36507 1.30596 1.88441 1.22586 1.01639 1.01332 0.92425 1.20537 0.98376 0.98634 0.88072 1.20001 0.95968 0.91898 0.95458 1.22207 1.04254 1.03223 0.91076 1.21682 1.02187 0.99436 1.00651 1.24245 1.03218 1.02337 0.80170 1.84209 1.50125 1.43530 1.27369 0.92581 0.94538 0.93272 0.88395 0.89131 0.84354 0.85285 0.85305 0.83044 0.83636 0.82826 0.83080 0.83405 0.78127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.09 13.29 55.43 0.74 -24.35 16 2 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.54 -14.30 9.39 -34.44 -0.32 -14.62 16 8 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 9 C 0.23 5.80 4.85 -5.19 -0.03 5.78 16 10 N -0.58 -12.52 2.44 -179.87 -0.44 -12.96 16 11 C 0.17 3.20 5.72 -5.19 -0.03 3.17 16 12 C 0.12 2.17 6.36 -82.58 -0.53 1.64 16 13 C -0.15 -2.38 9.72 -39.44 -0.38 -2.76 16 14 C -0.08 -1.10 10.18 -39.28 -0.40 -1.50 16 15 C -0.18 -2.27 10.11 -39.44 -0.40 -2.67 16 16 C 0.09 1.40 11.18 -17.55 -0.20 1.20 16 17 N -0.46 -8.53 10.27 -9.47 -0.10 -8.63 16 18 C 0.55 11.57 7.44 -15.00 -0.11 11.46 16 19 O -0.58 -12.36 15.63 5.12 0.08 -12.28 16 20 C -0.16 -3.19 8.68 -39.26 -0.34 -3.53 16 21 C -0.04 -0.62 9.39 -39.23 -0.37 -0.98 16 22 C 0.02 0.27 6.84 -38.40 -0.26 0.01 16 23 C -0.19 -2.52 10.90 -38.91 -0.42 -2.94 16 24 C -0.22 -2.64 10.87 -39.90 -0.43 -3.07 16 25 C -0.03 -0.39 12.06 29.64 0.36 -0.03 16 26 O -0.16 -2.66 10.18 4.68 0.05 -2.62 16 27 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 28 H 0.04 0.95 6.08 -51.93 -0.32 0.63 16 29 H 0.05 1.31 8.07 -51.93 -0.42 0.89 16 30 H 0.10 1.92 8.07 -51.93 -0.42 1.50 16 31 H 0.09 1.62 7.32 -51.93 -0.38 1.24 16 32 H 0.14 2.12 8.00 -52.49 -0.42 1.70 16 33 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 34 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 35 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 36 H 0.15 3.18 5.75 -52.48 -0.30 2.88 16 37 H 0.15 2.40 7.46 -52.48 -0.39 2.01 16 38 H 0.15 1.63 8.06 -52.48 -0.42 1.21 16 39 H 0.15 1.32 8.06 -52.48 -0.42 0.90 16 40 H 0.20 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 357.03 15.07 5.38 5.38 Total: -1.00 -31.55 357.03 -8.00 -39.55 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -4.73 Total: 7.05 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -3.96 Total: -7.16 kcal Atomic # 7 Polarization: -46.14 SS G_CDS: 0.20 Total: -45.94 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: 0.13 Total: -14.90 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.55 -8.00 -39.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728871281.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.324 kcal (2) G-P(sol) polarization free energy of solvation -31.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds