Wall clock time and date at job start Fri Apr 10 2020 22:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00389 * 2 1 4 4 H 1.48502 * 109.47034 * 270.00197 * 3 2 1 5 5 H 1.48500 * 109.46779 * 29.99542 * 3 2 1 6 6 H 1.48494 * 109.47307 * 150.00033 * 3 2 1 7 7 C 1.37880 * 119.99746 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99698 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99943 * 359.97438 * 7 2 1 10 10 N 1.46505 * 109.46907 * 179.97438 * 9 7 2 11 11 C 1.46504 * 119.99240 * 90.00558 * 10 9 7 12 12 C 1.50707 * 109.46935 * 90.00317 * 11 10 9 13 13 C 1.38227 * 119.62059 * 95.01845 * 12 11 10 14 14 C 1.38627 * 119.15702 * 179.74122 * 13 12 11 15 15 C 1.38669 * 118.42389 * 0.47826 * 14 13 12 16 16 C 1.38186 * 119.16143 * 359.49762 * 15 14 13 17 17 N 1.31856 * 119.61137 * 274.99275 * 12 11 10 18 18 C 1.34776 * 120.00348 * 270.00368 * 10 9 7 19 19 O 1.21775 * 119.99626 * 180.02562 * 18 10 9 20 20 C 1.41546 * 120.00054 * 0.02562 * 18 10 9 21 21 C 1.35618 * 120.00274 * 179.97438 * 20 18 10 22 22 C 1.41609 * 120.00532 * 179.97438 * 21 20 18 23 23 C 1.37948 * 126.10925 * 180.02562 * 22 21 20 24 24 C 1.40310 * 106.53157 * 179.97438 * 23 22 21 25 25 C 1.35156 * 107.20555 * 359.97438 * 24 23 22 26 26 O 1.34021 * 109.03244 * 359.75422 * 25 24 23 27 27 H 0.97001 * 119.99623 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46778 * 60.00725 * 9 7 2 29 29 H 1.08999 * 109.47563 * 300.00499 * 9 7 2 30 30 H 1.08997 * 109.47679 * 329.99784 * 11 10 9 31 31 H 1.09003 * 109.46652 * 209.99744 * 11 10 9 32 32 H 1.07998 * 120.41916 * 359.95342 * 13 12 11 33 33 H 1.08008 * 120.78688 * 180.22921 * 14 13 12 34 34 H 1.08002 * 120.42244 * 179.78279 * 15 14 13 35 35 H 1.07996 * 119.61757 * 180.25243 * 16 15 14 36 36 H 1.08010 * 120.00067 * 359.97438 * 20 18 10 37 37 H 1.08008 * 119.99959 * 0.02562 * 21 20 18 38 38 H 1.08006 * 126.73031 * 359.97438 * 23 22 21 39 39 H 1.08005 * 126.39719 * 179.97438 * 24 23 22 40 40 H 1.08002 * 125.48177 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 7 2.2029 -3.6127 0.0015 11 6 2.6797 -4.1689 1.2702 12 6 1.7632 -5.2830 1.7063 13 6 2.0800 -6.5911 1.3912 14 6 1.2329 -7.6087 1.8018 15 6 0.0887 -7.2704 2.5084 16 6 -0.1620 -5.9404 2.7869 17 7 0.6688 -4.9985 2.3844 18 6 2.6400 -4.1255 -1.1658 19 8 3.4310 -5.0514 -1.1658 20 6 2.1797 -3.5877 -2.3916 21 6 2.6199 -4.1033 -3.5661 22 6 2.1590 -3.5657 -4.7925 23 6 2.5213 -3.9910 -6.0538 24 6 1.8261 -3.1800 -6.9635 25 6 1.0841 -2.3125 -6.2398 26 8 1.2818 -2.5505 -4.9358 27 1 -0.4849 0.8401 -0.0004 28 1 0.6241 -2.5575 -0.8881 29 1 0.6245 -2.5563 0.8919 30 1 2.6880 -3.3870 2.0295 31 1 3.6891 -4.5590 1.1393 32 1 2.9777 -6.8176 0.8352 33 1 1.4568 -8.6403 1.5732 34 1 -0.5955 -8.0371 2.8408 35 1 -1.0488 -5.6689 3.3403 36 1 1.4779 -2.7668 -2.3915 37 1 3.3215 -4.9245 -3.5663 38 1 3.2057 -4.7913 -6.2938 39 1 1.8748 -3.2380 -8.0409 40 1 0.4336 -1.5525 -6.6469 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728871281.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:16 Heat of formation + Delta-G solvation = 21.464997 kcal Electronic energy + Delta-G solvation = -24841.205768 eV Core-core repulsion = 21201.725365 eV Total energy + Delta-G solvation = -3639.480403 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.47502 -41.43091 -40.52090 -36.91467 -35.27516 -34.63971 -33.96521 -33.37626 -32.80215 -30.09458 -29.38848 -27.72666 -25.29081 -24.56220 -24.30769 -22.98371 -22.69821 -21.23089 -19.58023 -18.78688 -18.67103 -17.76473 -17.70727 -17.17222 -17.05225 -16.95501 -16.49974 -16.34226 -15.72918 -15.53228 -15.10494 -14.44725 -14.29820 -14.19090 -13.94884 -13.86662 -13.74017 -13.57914 -13.37868 -13.06994 -13.01065 -12.76570 -12.62400 -12.48390 -12.04068 -11.75629 -11.63559 -10.99977 -10.81342 -10.79680 -10.61042 -10.37769 -9.95787 -9.55206 -8.89354 -8.20977 -6.36416 -0.52471 0.14216 0.40493 1.19934 1.39387 1.39556 1.50676 1.75369 2.11232 2.26351 2.42259 2.51398 3.00804 3.08709 3.39426 3.70859 3.83754 4.02296 4.03479 4.08433 4.17960 4.20735 4.26663 4.31256 4.55191 4.59909 4.71547 4.77013 4.85389 4.88000 4.91621 5.05424 5.11431 5.19362 5.24909 5.27702 5.31037 5.60906 5.62144 5.78227 5.83345 6.03251 6.16634 6.50373 6.77202 7.12987 7.23538 7.36363 8.85197 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.008345 B = 0.005238 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3354.299706 B = 5344.179038 C = 7828.824677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.019 3.981 3 Si 0.960 3.040 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.546 4.546 8 H 0.053 0.947 9 C 0.260 3.740 10 N -0.585 5.585 11 C 0.167 3.833 12 C 0.094 3.906 13 C -0.160 4.160 14 C -0.078 4.078 15 C -0.164 4.164 16 C 0.078 3.922 17 N -0.508 5.508 18 C 0.549 3.451 19 O -0.587 6.587 20 C -0.218 4.218 21 C 0.015 3.985 22 C -0.045 4.045 23 C -0.153 4.153 24 C -0.221 4.221 25 C -0.025 4.025 26 O -0.193 6.193 27 H 0.268 0.732 28 H 0.017 0.983 29 H 0.022 0.978 30 H 0.080 0.920 31 H 0.098 0.902 32 H 0.137 0.863 33 H 0.168 0.832 34 H 0.173 0.827 35 H 0.174 0.826 36 H 0.116 0.884 37 H 0.171 0.829 38 H 0.182 0.818 39 H 0.187 0.813 40 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.165 -12.439 -7.077 14.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.181 4.181 3 Si 0.785 3.215 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.585 4.585 8 H 0.072 0.928 9 C 0.140 3.860 10 N -0.314 5.314 11 C 0.044 3.956 12 C -0.044 4.044 13 C -0.180 4.180 14 C -0.104 4.104 15 C -0.183 4.183 16 C -0.079 4.079 17 N -0.218 5.218 18 C 0.343 3.657 19 O -0.473 6.473 20 C -0.239 4.239 21 C -0.005 4.005 22 C -0.093 4.093 23 C -0.172 4.172 24 C -0.240 4.240 25 C -0.094 4.094 26 O -0.090 6.090 27 H 0.077 0.923 28 H 0.035 0.965 29 H 0.040 0.960 30 H 0.099 0.901 31 H 0.116 0.884 32 H 0.155 0.845 33 H 0.186 0.814 34 H 0.191 0.809 35 H 0.191 0.809 36 H 0.134 0.866 37 H 0.188 0.812 38 H 0.199 0.801 39 H 0.204 0.796 40 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 1.082 -11.726 -6.574 13.487 hybrid contribution 0.231 0.529 -0.036 0.578 sum 1.312 -11.197 -6.610 13.069 Atomic orbital electron populations 1.70046 1.07361 1.28147 1.50409 1.25717 0.95636 1.02512 0.94243 0.85519 0.78659 0.78873 0.78435 1.19896 1.20267 1.19360 1.21662 0.93258 0.91572 1.51973 0.92842 1.19018 0.87427 0.82804 0.96787 1.48046 1.44770 1.33695 1.04845 1.20164 0.95819 0.93814 0.85833 1.21608 0.93462 0.94459 0.94905 1.22175 1.02170 0.93109 1.00557 1.22000 0.93136 1.00665 0.94591 1.22530 0.98617 0.97902 0.99278 1.23280 0.98046 0.89699 0.96894 1.67487 1.03840 1.39582 1.10890 1.17109 0.81038 0.82518 0.85060 1.90655 1.37097 1.30976 1.88550 1.22170 1.05060 1.03476 0.93155 1.20769 0.95374 0.96634 0.87711 1.20121 0.98937 0.94172 0.96121 1.22748 1.02275 1.02281 0.89892 1.22175 1.01124 0.98340 1.02343 1.25214 1.02642 1.02519 0.78994 1.84204 1.50869 1.44267 1.29621 0.92336 0.96466 0.96039 0.90128 0.88425 0.84491 0.81447 0.80944 0.80936 0.86636 0.81175 0.80070 0.79619 0.74781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.14 13.29 21.45 0.28 -53.86 16 2 C 0.02 1.07 5.46 84.66 0.46 1.53 16 3 Si 0.96 44.23 29.54 68.60 2.03 46.26 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.55 -30.85 9.39 25.60 0.24 -30.61 16 8 H 0.05 3.04 7.81 -2.91 -0.02 3.01 16 9 C 0.26 13.99 4.85 85.63 0.42 14.40 16 10 N -0.59 -27.44 2.44 -841.16 -2.05 -29.49 16 11 C 0.17 6.97 5.72 85.63 0.49 7.46 16 12 C 0.09 3.55 6.36 42.55 0.27 3.82 16 13 C -0.16 -5.04 9.72 22.36 0.22 -4.82 16 14 C -0.08 -1.87 10.18 22.47 0.23 -1.64 16 15 C -0.16 -3.68 10.11 22.36 0.23 -3.46 16 16 C 0.08 2.28 11.18 84.67 0.95 3.23 16 17 N -0.51 -19.60 10.27 -183.88 -1.89 -21.49 16 18 C 0.55 24.77 7.44 85.06 0.63 25.40 16 19 O -0.59 -26.00 15.63 -4.59 -0.07 -26.07 16 20 C -0.22 -9.33 8.68 22.48 0.20 -9.14 16 21 C 0.01 0.52 9.39 22.49 0.21 0.73 16 22 C -0.04 -1.43 6.84 23.03 0.16 -1.27 16 23 C -0.15 -3.59 10.90 22.71 0.25 -3.35 16 24 C -0.22 -4.42 10.87 22.06 0.24 -4.18 16 25 C -0.03 -0.59 12.06 67.11 0.81 0.22 16 26 O -0.19 -6.56 10.18 -6.18 -0.06 -6.62 16 27 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 28 H 0.02 0.99 6.08 -2.39 -0.01 0.98 16 29 H 0.02 1.25 8.07 -2.39 -0.02 1.23 16 30 H 0.08 3.50 8.07 -2.39 -0.02 3.48 16 31 H 0.10 3.78 7.32 -2.39 -0.02 3.76 16 32 H 0.14 4.26 8.00 -2.91 -0.02 4.24 16 33 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 34 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 35 H 0.17 4.03 8.06 -2.91 -0.02 4.01 16 36 H 0.12 5.60 5.75 -2.91 -0.02 5.58 16 37 H 0.17 5.20 7.46 -2.91 -0.02 5.17 16 38 H 0.18 3.08 8.06 -2.91 -0.02 3.06 16 39 H 0.19 2.28 8.06 -2.91 -0.02 2.26 16 40 H 0.24 3.46 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -73.61 357.03 5.28 -68.33 By element: Atomic # 1 Polarization: 23.56 SS G_CDS: 1.05 Total: 24.61 kcal Atomic # 6 Polarization: -7.66 SS G_CDS: 5.99 Total: -1.67 kcal Atomic # 7 Polarization: -101.18 SS G_CDS: -3.66 Total: -104.83 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -0.13 Total: -32.70 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -73.61 5.28 -68.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728871281.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.798 kcal (2) G-P(sol) polarization free energy of solvation -73.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds