Wall clock time and date at job start Fri Apr 10 2020 22:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00012 * 2 1 4 4 H 1.48503 * 109.47006 * 269.99996 * 3 2 1 5 5 H 1.48508 * 109.47003 * 29.99671 * 3 2 1 6 6 H 1.48496 * 109.47432 * 149.99853 * 3 2 1 7 7 C 1.37872 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99907 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00306 * 0.02562 * 7 2 1 10 10 N 1.46490 * 109.47596 * 179.97438 * 9 7 2 11 11 C 1.46501 * 120.00260 * 89.99875 * 10 9 7 12 12 C 1.50701 * 109.47227 * 270.00457 * 11 10 9 13 13 C 1.38230 * 119.61982 * 94.97506 * 12 11 10 14 14 C 1.38624 * 119.16055 * 179.78994 * 13 12 11 15 15 C 1.38676 * 118.41912 * 0.47446 * 14 13 12 16 16 C 1.38173 * 119.16345 * 359.50284 * 15 14 13 17 17 N 1.31852 * 119.61807 * 274.99699 * 12 11 10 18 18 C 1.34776 * 120.00230 * 270.00323 * 10 9 7 19 19 O 1.21777 * 120.00135 * 179.97438 * 18 10 9 20 20 C 1.41554 * 119.99673 * 359.97438 * 18 10 9 21 21 C 1.35631 * 119.99912 * 186.43443 * 20 18 10 22 22 C 1.41612 * 119.99945 * 8.88747 * 21 20 18 23 23 C 1.37947 * 126.10440 * 219.74079 * 22 21 20 24 24 C 1.40319 * 106.52901 * 179.84988 * 23 22 21 25 25 C 1.35155 * 107.20145 * 0.41511 * 24 23 22 26 26 O 1.34013 * 109.03522 * 359.73768 * 25 24 23 27 27 H 0.97004 * 120.00340 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46805 * 59.99815 * 9 7 2 29 29 H 1.09007 * 109.47029 * 300.00259 * 9 7 2 30 30 H 1.08998 * 109.47364 * 150.00003 * 11 10 9 31 31 H 1.09000 * 109.46769 * 30.00058 * 11 10 9 32 32 H 1.07997 * 120.41753 * 359.97438 * 13 12 11 33 33 H 1.08004 * 120.78937 * 180.22772 * 14 13 12 34 34 H 1.07997 * 120.41662 * 179.78263 * 15 14 13 35 35 H 1.08001 * 119.62215 * 180.25390 * 16 15 14 36 36 H 1.07998 * 120.00066 * 6.43137 * 20 18 10 37 37 H 1.07996 * 120.00201 * 188.89308 * 21 20 18 38 38 H 1.08001 * 126.73517 * 359.97438 * 23 22 21 39 39 H 1.08001 * 126.39887 * 180.14699 * 24 23 22 40 40 H 1.08002 * 125.47966 * 179.72175 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.6791 -4.1694 1.2692 12 6 3.9222 -3.4369 1.7043 13 6 3.8175 -2.3769 2.5852 14 6 4.9676 -1.7127 2.9825 15 6 6.1845 -2.1351 2.4689 16 6 6.2112 -3.2030 1.5925 17 7 5.0971 -3.8144 1.2399 18 6 2.6410 -4.1248 -1.1666 19 8 3.4327 -5.0501 -1.1666 20 6 2.1807 -3.5871 -2.3925 21 6 2.5173 -4.1832 -3.5634 22 6 3.1665 -5.4417 -3.5562 23 6 4.1909 -5.8327 -4.3933 24 6 4.5245 -7.1462 -4.0295 25 6 3.7042 -7.5006 -3.0155 26 8 2.8895 -6.4746 -2.7333 27 1 -0.4851 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8903 30 1 2.9075 -5.2272 1.1389 31 1 1.9057 -4.0555 2.0289 32 1 2.8523 -2.0719 2.9615 33 1 4.9167 -0.8834 3.6726 34 1 7.1002 -1.6385 2.7538 35 1 7.1553 -3.5407 1.1912 36 1 1.5615 -2.7023 -2.3955 37 1 2.2902 -3.6981 -4.5012 38 1 4.6481 -5.2427 -5.1739 39 1 5.2904 -7.7608 -4.4789 40 1 3.7050 -8.4569 -2.5135 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728871282.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:19 Heat of formation + Delta-G solvation = 51.832015 kcal Electronic energy + Delta-G solvation = -25813.819521 eV Core-core repulsion = 22175.655930 eV Total energy + Delta-G solvation = -3638.163591 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.94303 -39.86912 -38.86740 -35.21324 -33.60195 -32.74039 -32.35686 -31.95488 -31.25740 -28.51234 -27.57582 -26.12185 -23.52761 -23.06447 -22.65421 -21.52187 -21.20240 -20.04753 -18.15457 -17.14564 -16.66830 -16.42817 -16.07389 -15.78114 -15.37289 -15.21279 -14.99347 -14.46122 -14.03071 -13.68413 -13.42901 -13.16212 -12.85323 -12.53984 -12.48731 -12.40757 -12.27700 -12.07861 -11.89140 -11.54553 -11.34244 -11.27453 -10.95176 -10.72216 -10.19109 -9.80215 -9.56992 -9.43683 -9.37909 -9.02754 -8.92727 -8.63445 -8.45234 -7.72114 -7.46294 -6.20737 -4.26994 1.13341 1.55330 1.78140 2.58420 3.10149 3.19108 3.26884 3.30879 3.63601 3.92423 4.20841 4.30221 4.50975 4.80209 5.12427 5.19439 5.20208 5.22920 5.37786 5.39953 5.47606 5.50805 5.62172 5.85151 5.97974 6.04202 6.13590 6.15615 6.20228 6.26463 6.42193 6.50461 6.58007 6.64030 6.70936 6.80027 6.95729 7.13778 7.17026 7.55338 7.64820 7.75051 8.03736 8.34356 8.55015 8.80006 9.10828 9.41075 10.85541 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.011620 B = 0.005507 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.979332 B = 5082.941360 C = 6529.127719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.067 3.933 3 Si 0.890 3.110 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.235 3.765 10 N -0.588 5.588 11 C 0.173 3.827 12 C 0.125 3.875 13 C -0.133 4.133 14 C -0.084 4.084 15 C -0.182 4.182 16 C 0.086 3.914 17 N -0.459 5.459 18 C 0.537 3.463 19 O -0.533 6.533 20 C -0.159 4.159 21 C -0.046 4.046 22 C 0.040 3.960 23 C -0.204 4.204 24 C -0.225 4.225 25 C -0.030 4.030 26 O -0.131 6.131 27 H 0.265 0.735 28 H 0.041 0.959 29 H 0.037 0.963 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.136 0.864 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.146 0.854 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.937 -7.629 -0.642 9.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.136 4.136 3 Si 0.718 3.282 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.567 4.567 8 H 0.077 0.923 9 C 0.115 3.885 10 N -0.319 5.319 11 C 0.048 3.952 12 C -0.014 4.014 13 C -0.153 4.153 14 C -0.111 4.111 15 C -0.202 4.202 16 C -0.071 4.071 17 N -0.168 5.168 18 C 0.328 3.672 19 O -0.413 6.413 20 C -0.180 4.180 21 C -0.066 4.066 22 C -0.011 4.011 23 C -0.223 4.223 24 C -0.245 4.245 25 C -0.101 4.101 26 O -0.024 6.024 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.106 0.894 31 H 0.104 0.896 32 H 0.154 0.846 33 H 0.145 0.855 34 H 0.143 0.857 35 H 0.163 0.837 36 H 0.167 0.833 37 H 0.167 0.833 38 H 0.160 0.840 39 H 0.157 0.843 40 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 5.952 -8.675 -0.964 10.565 hybrid contribution 0.736 2.210 0.533 2.390 sum 6.688 -6.465 -0.430 9.312 Atomic orbital electron populations 1.69912 1.05883 1.27220 1.50002 1.24886 0.94745 0.99028 0.94921 0.86613 0.79925 0.83314 0.78397 1.20512 1.21092 1.19876 1.21468 0.93473 0.90310 1.51432 0.92315 1.19515 0.87450 0.82776 0.98726 1.48095 1.44710 1.35305 1.03782 1.20063 0.90976 0.97434 0.86706 1.21667 0.93673 0.93935 0.92137 1.21988 0.99462 0.95677 0.98196 1.21489 0.92573 0.98483 0.98509 1.22019 0.98560 0.99306 1.00331 1.22631 0.96712 0.92962 0.94802 1.67574 0.98141 1.29520 1.21580 1.17054 0.82162 0.83106 0.84867 1.90811 1.34430 1.28830 1.87234 1.22777 1.00218 1.02325 0.92651 1.20533 0.96660 0.90686 0.98706 1.19628 1.00055 0.89819 0.91562 1.22005 1.00562 0.96510 1.03269 1.21492 1.04021 0.97206 1.01735 1.23947 0.93890 0.92795 0.99426 1.84276 1.49877 1.20068 1.48189 0.92558 0.94163 0.94525 0.89353 0.89619 0.84624 0.85499 0.85719 0.83712 0.83250 0.83345 0.84017 0.84279 0.79168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.73 13.29 55.43 0.74 -23.00 16 2 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 20.35 29.54 -169.99 -5.02 15.33 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 6 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.53 -13.24 9.22 -34.44 -0.32 -13.56 16 8 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 9 C 0.24 5.38 4.85 -5.20 -0.03 5.35 16 10 N -0.59 -12.45 2.44 -179.88 -0.44 -12.89 16 11 C 0.17 3.29 5.76 -5.19 -0.03 3.26 16 12 C 0.13 2.43 6.36 -82.59 -0.53 1.90 16 13 C -0.13 -2.37 9.57 -39.44 -0.38 -2.75 16 14 C -0.08 -1.34 10.18 -39.28 -0.40 -1.74 16 15 C -0.18 -2.75 10.11 -39.44 -0.40 -3.15 16 16 C 0.09 1.46 11.18 -17.55 -0.20 1.26 16 17 N -0.46 -9.19 10.27 -9.48 -0.10 -9.29 16 18 C 0.54 11.61 7.24 -15.00 -0.11 11.50 16 19 O -0.53 -12.22 11.99 -19.71 -0.24 -12.46 16 20 C -0.16 -3.09 9.05 -39.25 -0.36 -3.45 16 21 C -0.05 -0.77 9.95 -39.23 -0.39 -1.16 16 22 C 0.04 0.72 5.32 -38.40 -0.20 0.51 16 23 C -0.20 -3.24 10.90 -38.91 -0.42 -3.66 16 24 C -0.23 -3.31 10.87 -39.90 -0.43 -3.74 16 25 C -0.03 -0.46 12.06 29.64 0.36 -0.11 16 26 O -0.13 -2.45 7.81 -20.12 -0.16 -2.61 16 27 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 28 H 0.04 0.95 6.18 -51.93 -0.32 0.63 16 29 H 0.04 0.86 7.90 -51.92 -0.41 0.45 16 30 H 0.09 1.71 7.42 -51.93 -0.39 1.32 16 31 H 0.09 1.43 7.79 -51.93 -0.40 1.02 16 32 H 0.14 2.33 8.06 -52.49 -0.42 1.91 16 33 H 0.13 1.69 8.06 -52.48 -0.42 1.26 16 34 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.15 2.05 8.06 -52.49 -0.42 1.63 16 36 H 0.15 2.93 6.20 -52.49 -0.33 2.60 16 37 H 0.15 1.92 8.06 -52.49 -0.42 1.49 16 38 H 0.14 1.91 8.06 -52.49 -0.42 1.48 16 39 H 0.14 1.64 8.06 -52.49 -0.42 1.21 16 40 H 0.19 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 350.81 15.07 5.29 5.29 Total: -1.00 -31.45 350.81 -8.63 -40.08 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -4.77 Total: 7.45 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -3.93 Total: -7.90 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: 0.20 Total: -45.17 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.39 Total: -15.07 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.45 -8.63 -40.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728871282.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.909 kcal (2) G-P(sol) polarization free energy of solvation -31.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds