Wall clock time and date at job start Fri Apr 10 2020 22:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00012 * 2 1 4 4 H 1.48503 * 109.47006 * 269.99996 * 3 2 1 5 5 H 1.48508 * 109.47003 * 29.99671 * 3 2 1 6 6 H 1.48496 * 109.47432 * 149.99853 * 3 2 1 7 7 C 1.37872 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99907 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00306 * 0.02562 * 7 2 1 10 10 N 1.46490 * 109.47596 * 179.97438 * 9 7 2 11 11 C 1.46501 * 120.00260 * 89.99875 * 10 9 7 12 12 C 1.50701 * 109.47227 * 270.00457 * 11 10 9 13 13 C 1.38230 * 119.61982 * 94.97506 * 12 11 10 14 14 C 1.38624 * 119.16055 * 179.78994 * 13 12 11 15 15 C 1.38676 * 118.41912 * 0.47446 * 14 13 12 16 16 C 1.38173 * 119.16345 * 359.50284 * 15 14 13 17 17 N 1.31852 * 119.61807 * 274.99699 * 12 11 10 18 18 C 1.34776 * 120.00230 * 270.00323 * 10 9 7 19 19 O 1.21777 * 120.00135 * 179.97438 * 18 10 9 20 20 C 1.41554 * 119.99673 * 359.97438 * 18 10 9 21 21 C 1.35631 * 119.99912 * 186.43443 * 20 18 10 22 22 C 1.41612 * 119.99945 * 8.88747 * 21 20 18 23 23 C 1.37947 * 126.10440 * 219.74079 * 22 21 20 24 24 C 1.40319 * 106.52901 * 179.84988 * 23 22 21 25 25 C 1.35155 * 107.20145 * 0.41511 * 24 23 22 26 26 O 1.34013 * 109.03522 * 359.73768 * 25 24 23 27 27 H 0.97004 * 120.00340 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46805 * 59.99815 * 9 7 2 29 29 H 1.09007 * 109.47029 * 300.00259 * 9 7 2 30 30 H 1.08998 * 109.47364 * 150.00003 * 11 10 9 31 31 H 1.09000 * 109.46769 * 30.00058 * 11 10 9 32 32 H 1.07997 * 120.41753 * 359.97438 * 13 12 11 33 33 H 1.08004 * 120.78937 * 180.22772 * 14 13 12 34 34 H 1.07997 * 120.41662 * 179.78263 * 15 14 13 35 35 H 1.08001 * 119.62215 * 180.25390 * 16 15 14 36 36 H 1.07998 * 120.00066 * 6.43137 * 20 18 10 37 37 H 1.07996 * 120.00201 * 188.89308 * 21 20 18 38 38 H 1.08001 * 126.73517 * 359.97438 * 23 22 21 39 39 H 1.08001 * 126.39887 * 180.14699 * 24 23 22 40 40 H 1.08002 * 125.47966 * 179.72175 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 2.6791 -4.1694 1.2692 12 6 3.9222 -3.4369 1.7043 13 6 3.8175 -2.3769 2.5852 14 6 4.9676 -1.7127 2.9825 15 6 6.1845 -2.1351 2.4689 16 6 6.2112 -3.2030 1.5925 17 7 5.0971 -3.8144 1.2399 18 6 2.6410 -4.1248 -1.1666 19 8 3.4327 -5.0501 -1.1666 20 6 2.1807 -3.5871 -2.3925 21 6 2.5173 -4.1832 -3.5634 22 6 3.1665 -5.4417 -3.5562 23 6 4.1909 -5.8327 -4.3933 24 6 4.5245 -7.1462 -4.0295 25 6 3.7042 -7.5006 -3.0155 26 8 2.8895 -6.4746 -2.7333 27 1 -0.4851 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6240 -2.5567 0.8903 30 1 2.9075 -5.2272 1.1389 31 1 1.9057 -4.0555 2.0289 32 1 2.8523 -2.0719 2.9615 33 1 4.9167 -0.8834 3.6726 34 1 7.1002 -1.6385 2.7538 35 1 7.1553 -3.5407 1.1912 36 1 1.5615 -2.7023 -2.3955 37 1 2.2902 -3.6981 -4.5012 38 1 4.6481 -5.2427 -5.1739 39 1 5.2904 -7.7608 -4.4789 40 1 3.7050 -8.4569 -2.5135 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728871282.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:18 Heat of formation + Delta-G solvation = 35.511356 kcal Electronic energy + Delta-G solvation = -25814.527237 eV Core-core repulsion = 22175.655930 eV Total energy + Delta-G solvation = -3638.871308 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.20801 -41.28879 -40.36372 -36.85367 -35.09533 -34.51109 -33.63919 -33.30488 -32.67523 -29.83543 -29.35576 -27.61090 -25.15575 -24.46052 -24.18973 -22.86117 -22.44541 -21.39125 -19.60400 -18.73243 -18.48518 -17.82026 -17.47296 -17.15281 -16.74116 -16.66962 -16.49371 -16.10443 -15.53710 -15.12063 -14.83025 -14.51288 -14.23127 -14.14230 -13.88778 -13.83074 -13.61335 -13.51886 -13.29905 -13.09534 -13.00586 -12.74830 -12.61346 -12.45590 -12.01277 -11.69981 -10.95595 -10.79662 -10.69769 -10.60727 -10.48477 -10.30058 -9.84908 -9.37592 -8.78738 -8.16748 -6.28833 -0.25308 0.23836 0.47917 1.31618 1.37886 1.41633 1.49638 1.87385 2.29276 2.43563 2.53410 2.67750 3.09546 3.13673 3.47993 3.85768 3.96383 4.03492 4.08333 4.23546 4.26074 4.29326 4.32860 4.50503 4.60502 4.66201 4.81908 4.87369 4.92178 4.94082 4.97905 5.15341 5.17653 5.26530 5.29508 5.34670 5.47420 5.70044 5.77643 5.87500 5.91708 6.10393 6.41324 6.61643 6.86587 7.20876 7.37900 7.52239 8.88288 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.011620 B = 0.005507 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2408.979332 B = 5082.941360 C = 6529.127719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.029 3.971 3 Si 0.943 3.057 4 H -0.278 1.278 5 H -0.279 1.279 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.040 0.960 9 C 0.251 3.749 10 N -0.592 5.592 11 C 0.172 3.828 12 C 0.104 3.896 13 C -0.147 4.147 14 C -0.088 4.088 15 C -0.170 4.170 16 C 0.072 3.928 17 N -0.495 5.495 18 C 0.533 3.467 19 O -0.553 6.553 20 C -0.207 4.207 21 C -0.008 4.008 22 C -0.006 4.006 23 C -0.193 4.193 24 C -0.230 4.230 25 C -0.036 4.036 26 O -0.160 6.160 27 H 0.267 0.733 28 H 0.031 0.969 29 H 0.026 0.974 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.134 0.866 33 H 0.156 0.844 34 H 0.165 0.835 35 H 0.169 0.831 36 H 0.140 0.860 37 H 0.188 0.812 38 H 0.167 0.833 39 H 0.171 0.829 40 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.931 -7.242 -1.209 10.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.171 4.171 3 Si 0.770 3.230 4 H -0.204 1.204 5 H -0.205 1.205 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.058 0.942 9 C 0.131 3.869 10 N -0.323 5.323 11 C 0.048 3.952 12 C -0.035 4.035 13 C -0.168 4.168 14 C -0.114 4.114 15 C -0.189 4.189 16 C -0.085 4.085 17 N -0.205 5.205 18 C 0.325 3.675 19 O -0.435 6.435 20 C -0.227 4.227 21 C -0.028 4.028 22 C -0.056 4.056 23 C -0.213 4.213 24 C -0.248 4.248 25 C -0.106 4.106 26 O -0.054 6.054 27 H 0.076 0.924 28 H 0.049 0.951 29 H 0.044 0.956 30 H 0.096 0.904 31 H 0.119 0.881 32 H 0.152 0.848 33 H 0.174 0.826 34 H 0.183 0.817 35 H 0.186 0.814 36 H 0.158 0.842 37 H 0.205 0.795 38 H 0.184 0.816 39 H 0.189 0.811 40 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 7.945 -8.290 -1.526 11.583 hybrid contribution 0.247 1.933 0.636 2.050 sum 8.192 -6.357 -0.890 10.407 Atomic orbital electron populations 1.69989 1.06895 1.27924 1.50932 1.25457 0.95355 1.01537 0.94778 0.85777 0.78785 0.80234 0.78250 1.20433 1.20472 1.19914 1.21430 0.92439 0.91297 1.50886 0.94172 1.19175 0.87354 0.82814 0.97576 1.48064 1.44609 1.34929 1.04664 1.20138 0.91905 0.96843 0.86358 1.21609 0.93527 0.94973 0.93353 1.22074 1.00426 0.95813 0.98442 1.21906 0.92142 0.98781 0.98542 1.22423 0.99815 0.98137 0.98569 1.23147 0.96702 0.93490 0.95209 1.67516 0.99096 1.31070 1.22847 1.17390 0.81841 0.82815 0.85462 1.90773 1.35427 1.29734 1.87571 1.22589 1.03696 1.03491 0.92919 1.21049 0.92704 0.89739 0.99276 1.19991 1.02233 0.90417 0.92960 1.22462 0.99205 0.97047 1.02546 1.21930 1.04424 0.97068 1.01419 1.24773 0.93024 0.93253 0.99536 1.84256 1.51074 1.21069 1.49017 0.92409 0.95147 0.95580 0.90355 0.88143 0.84812 0.82591 0.81709 0.81436 0.84249 0.79539 0.81580 0.81129 0.76144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.30 13.29 21.44 0.28 -49.01 16 2 C 0.03 1.49 5.46 84.65 0.46 1.95 16 3 Si 0.94 41.49 29.54 68.60 2.03 43.52 16 4 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 6 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.52 -26.69 9.22 25.60 0.24 -26.45 16 8 H 0.04 2.19 7.81 -2.91 -0.02 2.17 16 9 C 0.25 11.98 4.85 85.63 0.42 12.40 16 10 N -0.59 -26.20 2.44 -841.20 -2.05 -28.25 16 11 C 0.17 6.85 5.76 85.63 0.49 7.35 16 12 C 0.10 4.12 6.36 42.55 0.27 4.39 16 13 C -0.15 -5.26 9.57 22.36 0.21 -5.04 16 14 C -0.09 -2.63 10.18 22.47 0.23 -2.40 16 15 C -0.17 -4.68 10.11 22.36 0.23 -4.46 16 16 C 0.07 2.34 11.18 84.67 0.95 3.28 16 17 N -0.50 -20.02 10.27 -183.89 -1.89 -21.91 16 18 C 0.53 23.92 7.24 85.06 0.62 24.53 16 19 O -0.55 -26.15 11.99 19.15 0.23 -25.92 16 20 C -0.21 -8.27 9.05 22.48 0.20 -8.07 16 21 C -0.01 -0.27 9.95 22.50 0.22 -0.05 16 22 C -0.01 -0.21 5.32 23.03 0.12 -0.09 16 23 C -0.19 -5.71 10.90 22.71 0.25 -5.46 16 24 C -0.23 -6.17 10.87 22.07 0.24 -5.93 16 25 C -0.04 -1.06 12.06 67.11 0.81 -0.25 16 26 O -0.16 -5.99 7.81 17.68 0.14 -5.85 16 27 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 28 H 0.03 1.51 6.18 -2.39 -0.01 1.50 16 29 H 0.03 1.28 7.90 -2.38 -0.02 1.27 16 30 H 0.08 3.21 7.42 -2.39 -0.02 3.19 16 31 H 0.10 3.54 7.79 -2.39 -0.02 3.52 16 32 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 33 H 0.16 3.67 8.06 -2.91 -0.02 3.65 16 34 H 0.17 3.17 8.06 -2.91 -0.02 3.14 16 35 H 0.17 4.45 8.06 -2.91 -0.02 4.42 16 36 H 0.14 5.74 6.20 -2.91 -0.02 5.73 16 37 H 0.19 4.46 8.06 -2.91 -0.02 4.44 16 38 H 0.17 3.94 8.06 -2.91 -0.02 3.91 16 39 H 0.17 3.39 8.06 -2.91 -0.02 3.36 16 40 H 0.22 4.65 8.06 -2.91 -0.02 4.63 16 Total: -1.00 -68.98 350.81 5.74 -63.24 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: 1.05 Total: 28.49 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: 5.96 Total: -4.30 kcal Atomic # 7 Polarization: -95.52 SS G_CDS: -3.66 Total: -99.17 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: 0.37 Total: -31.77 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -68.98 5.74 -63.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728871282.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.747 kcal (2) G-P(sol) polarization free energy of solvation -68.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds