Wall clock time and date at job start Fri Apr 10 2020 22:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86795 * 120.00179 * 2 1 4 4 H 1.48508 * 109.47227 * 240.00243 * 3 2 1 5 5 H 1.48501 * 109.47291 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47420 * 120.00228 * 3 2 1 7 7 C 1.38651 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00353 * 179.97438 * 7 2 1 9 9 O 1.34837 * 119.99941 * 359.97438 * 7 2 1 10 10 C 1.35748 * 116.99972 * 174.58937 * 9 7 2 11 11 C 1.38955 * 120.03366 * 173.82073 * 10 9 7 12 12 C 1.38122 * 120.07148 * 179.77577 * 11 10 9 13 13 C 1.38206 * 120.13862 * 0.50815 * 12 11 10 14 14 C 1.38920 * 120.06462 * 359.74559 * 13 12 11 15 15 N 1.39921 * 120.03360 * 180.02562 * 14 13 12 16 16 C 1.34775 * 120.00297 * 326.32631 * 15 14 13 17 17 O 1.21295 * 119.99762 * 354.78375 * 16 15 14 18 18 C 1.50702 * 120.00390 * 174.78346 * 16 15 14 19 19 C 1.53005 * 109.47234 * 179.97438 * 18 16 15 20 20 C 1.50698 * 109.46887 * 179.97438 * 19 18 16 21 21 C 1.38647 * 120.78983 * 269.72023 * 20 19 18 22 22 C 1.38202 * 119.15871 * 179.80188 * 21 20 19 23 23 N 1.31872 * 120.76677 * 0.48446 * 22 21 20 24 24 C 1.31869 * 121.72446 * 359.74550 * 23 22 21 25 25 C 1.38207 * 120.76349 * 0.02562 * 24 23 22 26 26 C 1.38730 * 120.03629 * 354.10685 * 10 9 7 27 27 H 0.97004 * 119.99573 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.96091 * 0.02795 * 11 10 9 29 29 H 1.07997 * 119.93194 * 180.25727 * 12 11 10 30 30 H 1.07999 * 119.96778 * 179.76825 * 13 12 11 31 31 H 0.96999 * 119.99973 * 146.32491 * 15 14 13 32 32 H 1.08998 * 109.47198 * 300.00192 * 18 16 15 33 33 H 1.08996 * 109.46805 * 60.00424 * 18 16 15 34 34 H 1.08998 * 109.47197 * 300.00207 * 19 18 16 35 35 H 1.09002 * 109.46786 * 60.00057 * 19 18 16 36 36 H 1.07998 * 120.42108 * 0.02562 * 21 20 19 37 37 H 1.08007 * 119.61504 * 180.20551 * 22 21 20 38 38 H 1.07997 * 119.61485 * 180.02562 * 24 23 22 39 39 H 1.08002 * 120.41282 * 180.02562 * 25 24 23 40 40 H 1.08007 * 120.06845 * 359.94828 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6964 -1.2126 5 1 1.2847 2.7465 -0.0006 6 1 3.1034 1.6963 1.2124 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0692 -3.5042 -0.1151 11 6 1.4553 -4.7449 0.0065 12 6 2.2012 -5.9010 -0.1146 13 6 3.5617 -5.8280 -0.3465 14 6 4.1822 -4.5907 -0.4638 15 7 5.5596 -4.5176 -0.6992 16 6 6.3832 -5.4463 -0.1743 17 8 5.9444 -6.2900 0.5786 18 6 7.8494 -5.4366 -0.5228 19 6 8.5533 -6.5862 0.2011 20 6 10.0193 -6.5768 -0.1480 21 6 10.4944 -7.2931 -1.2358 22 6 11.8447 -7.2574 -1.5278 23 7 12.6784 -6.5609 -0.7801 24 6 12.2626 -5.8717 0.2645 25 6 10.9258 -5.8564 0.6147 26 6 3.4347 -3.4275 -0.3479 27 1 -0.4850 0.8401 -0.0004 28 1 0.3930 -4.8051 0.1919 29 1 1.7209 -6.8641 -0.0238 30 1 4.1428 -6.7338 -0.4370 31 1 5.9216 -3.7984 -1.2401 32 1 7.9677 -5.5581 -1.5995 33 1 8.2900 -4.4889 -0.2135 34 1 8.4350 -6.4642 1.2778 35 1 8.1126 -7.5341 -0.1078 36 1 9.8173 -7.8687 -1.8495 37 1 12.2223 -7.8099 -2.3755 38 1 12.9751 -5.3129 0.8530 39 1 10.5914 -5.2897 1.4712 40 1 3.9149 -2.4644 -0.4390 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729320646.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:21 Heat of formation + Delta-G solvation = -7.177835 kcal Electronic energy + Delta-G solvation = -23659.274376 eV Core-core repulsion = 20018.551926 eV Total energy + Delta-G solvation = -3640.722450 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.63124 -40.13962 -38.71246 -36.58047 -35.05575 -34.28230 -32.28272 -31.53814 -31.15171 -29.36564 -28.55318 -25.74317 -25.22874 -23.79820 -22.50777 -21.86319 -21.37007 -20.02110 -18.06169 -17.78834 -17.24455 -16.81599 -16.45427 -15.87946 -15.65020 -15.59949 -15.05257 -14.57206 -14.35878 -14.17885 -14.02244 -13.86390 -13.62006 -13.31793 -13.05591 -12.81870 -12.44420 -12.35666 -12.10011 -11.76425 -11.61899 -11.32225 -11.14787 -11.05804 -10.78960 -10.48826 -10.07691 -9.88185 -9.81811 -9.60354 -9.50234 -9.46270 -8.83688 -7.78213 -7.20213 -6.48246 -4.08229 0.78897 0.88139 1.90545 2.32850 2.77950 3.09160 3.10031 3.13358 3.15804 3.48880 3.92747 4.12669 4.24865 4.39338 4.53705 4.59483 4.76562 4.78407 4.84392 4.89223 5.07243 5.19960 5.23825 5.30691 5.37062 5.50013 5.64879 5.68213 5.78100 5.94298 6.03057 6.04120 6.20015 6.23474 6.36252 6.58956 6.91575 6.94348 7.07651 7.26437 7.37908 7.62932 7.63338 7.76553 7.95647 8.23317 8.96889 9.66961 10.69623 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.016958 B = 0.002503 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.720159 B =11182.067031 C =12558.475806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.040 3.960 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.393 4.393 8 H 0.089 0.911 9 O -0.175 6.175 10 C 0.167 3.833 11 C -0.199 4.199 12 C -0.063 4.063 13 C -0.206 4.206 14 C 0.179 3.821 15 N -0.670 5.670 16 C 0.510 3.490 17 O -0.520 6.520 18 C -0.133 4.133 19 C -0.068 4.068 20 C -0.036 4.036 21 C -0.170 4.170 22 C 0.098 3.902 23 N -0.492 5.492 24 C 0.099 3.901 25 C -0.170 4.170 26 C -0.257 4.257 27 H 0.271 0.729 28 H 0.118 0.882 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.407 0.593 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.136 0.864 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.136 0.864 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.797 -10.445 -2.812 22.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.107 0.893 9 O -0.079 6.079 10 C 0.113 3.887 11 C -0.219 4.219 12 C -0.082 4.082 13 C -0.227 4.227 14 C 0.086 3.914 15 N -0.314 5.314 16 C 0.297 3.703 17 O -0.395 6.395 18 C -0.174 4.174 19 C -0.106 4.106 20 C -0.044 4.044 21 C -0.190 4.190 22 C -0.058 4.058 23 N -0.201 5.201 24 C -0.058 4.058 25 C -0.190 4.190 26 C -0.278 4.278 27 H 0.081 0.919 28 H 0.136 0.864 29 H 0.134 0.866 30 H 0.136 0.864 31 H 0.242 0.758 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.153 0.847 37 H 0.172 0.828 38 H 0.172 0.828 39 H 0.154 0.846 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 19.979 -10.838 -2.465 22.863 hybrid contribution -0.190 1.317 -0.106 1.335 sum 19.790 -9.521 -2.571 22.111 Atomic orbital electron populations 1.70027 1.05933 1.27800 1.45858 1.25278 0.95842 0.98795 0.96542 0.85798 0.78734 0.79881 0.79101 1.19559 1.20236 1.19531 1.21215 0.91614 0.80888 1.53203 0.89334 1.84020 1.33912 1.11370 1.78551 1.19094 0.89541 0.88130 0.91917 1.20260 1.00176 0.90003 1.11474 1.20534 0.93120 0.96957 0.97623 1.20519 0.94631 0.95783 1.11738 1.17410 0.81238 0.93955 0.98792 1.43533 1.06003 1.29685 1.52199 1.20652 0.88306 0.81292 0.80073 1.90738 1.77413 1.37119 1.34262 1.21627 0.91815 1.01100 1.02815 1.20392 0.88903 0.99314 1.02002 1.20366 0.96199 0.94048 0.93802 1.22118 0.97329 1.01157 0.98379 1.22781 0.89858 0.95405 0.97784 1.67684 1.39470 1.07352 1.05573 1.22785 0.94176 0.95442 0.93379 1.22135 0.94455 1.00930 1.01436 1.20819 0.94818 0.97225 1.14968 0.91929 0.86351 0.86598 0.86408 0.75804 0.88439 0.88512 0.89412 0.89448 0.84653 0.82777 0.82756 0.84618 0.85264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.91 13.67 55.48 0.76 -24.16 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 20.04 29.55 -169.99 -5.02 15.01 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 7 C -0.39 -10.75 9.44 30.88 0.29 -10.46 16 8 H 0.09 2.22 5.30 -52.49 -0.28 1.95 16 9 O -0.18 -4.93 9.76 0.04 0.00 -4.93 16 10 C 0.17 4.01 6.64 -39.13 -0.26 3.75 16 11 C -0.20 -4.23 9.99 -39.36 -0.39 -4.62 16 12 C -0.06 -1.18 10.03 -39.64 -0.40 -1.58 16 13 C -0.21 -3.85 8.65 -39.34 -0.34 -4.19 16 14 C 0.18 3.32 6.27 -83.72 -0.52 2.80 16 15 N -0.67 -9.41 5.34 -9.88 -0.05 -9.47 16 16 C 0.51 6.70 7.57 -10.99 -0.08 6.62 16 17 O -0.52 -8.77 13.69 5.54 0.08 -8.70 16 18 C -0.13 -1.11 5.68 -27.88 -0.16 -1.27 16 19 C -0.07 -0.57 4.68 -27.88 -0.13 -0.71 16 20 C -0.04 -0.29 5.17 -104.32 -0.54 -0.82 16 21 C -0.17 -1.26 9.82 -39.44 -0.39 -1.64 16 22 C 0.10 0.78 11.18 -17.55 -0.20 0.59 16 23 N -0.49 -4.74 10.36 -13.25 -0.14 -4.88 16 24 C 0.10 0.80 11.18 -17.55 -0.20 0.60 16 25 C -0.17 -1.29 9.82 -39.44 -0.39 -1.68 16 26 C -0.26 -5.45 9.04 -39.21 -0.35 -5.80 16 27 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 29 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.12 2.13 6.43 -52.49 -0.34 1.79 16 31 H 0.41 4.41 8.82 -40.82 -0.36 4.05 16 32 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.09 0.80 8.06 -51.93 -0.42 0.39 16 35 H 0.09 0.77 8.06 -51.93 -0.42 0.35 16 36 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.15 0.84 8.06 -52.48 -0.42 0.42 16 38 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 40 H 0.13 2.68 5.71 -52.48 -0.30 2.38 16 LS Contribution 349.68 15.07 5.27 5.27 Total: -1.00 -33.96 349.68 -7.89 -41.85 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -4.63 Total: 7.43 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -4.15 Total: -17.44 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.57 Total: -38.50 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: 0.08 Total: -13.62 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.96 -7.89 -41.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729320646.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.671 kcal (2) G-P(sol) polarization free energy of solvation -33.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds