Wall clock time and date at job start Fri Apr 10 2020 22:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86795 * 120.00179 * 2 1 4 4 H 1.48508 * 109.47227 * 240.00243 * 3 2 1 5 5 H 1.48501 * 109.47291 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47420 * 120.00228 * 3 2 1 7 7 C 1.38651 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00353 * 179.97438 * 7 2 1 9 9 O 1.34837 * 119.99941 * 359.97438 * 7 2 1 10 10 C 1.35748 * 116.99972 * 174.58937 * 9 7 2 11 11 C 1.38955 * 120.03366 * 173.82073 * 10 9 7 12 12 C 1.38122 * 120.07148 * 179.77577 * 11 10 9 13 13 C 1.38206 * 120.13862 * 0.50815 * 12 11 10 14 14 C 1.38920 * 120.06462 * 359.74559 * 13 12 11 15 15 N 1.39921 * 120.03360 * 180.02562 * 14 13 12 16 16 C 1.34775 * 120.00297 * 326.32631 * 15 14 13 17 17 O 1.21295 * 119.99762 * 354.78375 * 16 15 14 18 18 C 1.50702 * 120.00390 * 174.78346 * 16 15 14 19 19 C 1.53005 * 109.47234 * 179.97438 * 18 16 15 20 20 C 1.50698 * 109.46887 * 179.97438 * 19 18 16 21 21 C 1.38647 * 120.78983 * 269.72023 * 20 19 18 22 22 C 1.38202 * 119.15871 * 179.80188 * 21 20 19 23 23 N 1.31872 * 120.76677 * 0.48446 * 22 21 20 24 24 C 1.31869 * 121.72446 * 359.74550 * 23 22 21 25 25 C 1.38207 * 120.76349 * 0.02562 * 24 23 22 26 26 C 1.38730 * 120.03629 * 354.10685 * 10 9 7 27 27 H 0.97004 * 119.99573 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.96091 * 0.02795 * 11 10 9 29 29 H 1.07997 * 119.93194 * 180.25727 * 12 11 10 30 30 H 1.07999 * 119.96778 * 179.76825 * 13 12 11 31 31 H 0.96999 * 119.99973 * 146.32491 * 15 14 13 32 32 H 1.08998 * 109.47198 * 300.00192 * 18 16 15 33 33 H 1.08996 * 109.46805 * 60.00424 * 18 16 15 34 34 H 1.08998 * 109.47197 * 300.00207 * 19 18 16 35 35 H 1.09002 * 109.46786 * 60.00057 * 19 18 16 36 36 H 1.07998 * 120.42108 * 0.02562 * 21 20 19 37 37 H 1.08007 * 119.61504 * 180.20551 * 22 21 20 38 38 H 1.07997 * 119.61485 * 180.02562 * 24 23 22 39 39 H 1.08002 * 120.41282 * 180.02562 * 25 24 23 40 40 H 1.08007 * 120.06845 * 359.94828 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1034 1.6964 -1.2126 5 1 1.2847 2.7465 -0.0006 6 1 3.1034 1.6963 1.2124 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0692 -3.5042 -0.1151 11 6 1.4553 -4.7449 0.0065 12 6 2.2012 -5.9010 -0.1146 13 6 3.5617 -5.8280 -0.3465 14 6 4.1822 -4.5907 -0.4638 15 7 5.5596 -4.5176 -0.6992 16 6 6.3832 -5.4463 -0.1743 17 8 5.9444 -6.2900 0.5786 18 6 7.8494 -5.4366 -0.5228 19 6 8.5533 -6.5862 0.2011 20 6 10.0193 -6.5768 -0.1480 21 6 10.4944 -7.2931 -1.2358 22 6 11.8447 -7.2574 -1.5278 23 7 12.6784 -6.5609 -0.7801 24 6 12.2626 -5.8717 0.2645 25 6 10.9258 -5.8564 0.6147 26 6 3.4347 -3.4275 -0.3479 27 1 -0.4850 0.8401 -0.0004 28 1 0.3930 -4.8051 0.1919 29 1 1.7209 -6.8641 -0.0238 30 1 4.1428 -6.7338 -0.4370 31 1 5.9216 -3.7984 -1.2401 32 1 7.9677 -5.5581 -1.5995 33 1 8.2900 -4.4889 -0.2135 34 1 8.4350 -6.4642 1.2778 35 1 8.1126 -7.5341 -0.1078 36 1 9.8173 -7.8687 -1.8495 37 1 12.2223 -7.8099 -2.3755 38 1 12.9751 -5.3129 0.8530 39 1 10.5914 -5.2897 1.4712 40 1 3.9149 -2.4644 -0.4390 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729320646.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:20 Heat of formation + Delta-G solvation = -28.862257 kcal Electronic energy + Delta-G solvation = -23660.214683 eV Core-core repulsion = 20018.551926 eV Total energy + Delta-G solvation = -3641.662757 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.63146 -41.02231 -40.31430 -38.18762 -35.82097 -35.59972 -34.23383 -32.07557 -31.98130 -30.89439 -30.07347 -27.36144 -26.38914 -24.34614 -23.62805 -23.48566 -22.29735 -21.28848 -19.79172 -19.28598 -18.29900 -17.45173 -17.37603 -17.05376 -16.85278 -16.52294 -16.41119 -15.97171 -15.90419 -15.52936 -15.23949 -14.73626 -14.66258 -14.55090 -14.31951 -14.02809 -13.55141 -13.47972 -13.23348 -13.12944 -12.74446 -12.70000 -12.62133 -12.39898 -12.14057 -11.92909 -11.51589 -11.24379 -10.95757 -10.70893 -10.45726 -10.39056 -10.04502 -9.35972 -8.87638 -8.46312 -6.15323 0.24666 0.29450 0.39787 0.69138 1.36182 1.46242 1.52500 1.62581 2.05759 2.18468 2.83602 2.90357 3.16841 3.46789 3.50363 3.65080 3.84096 3.86853 4.07774 4.20190 4.23374 4.25018 4.29749 4.32758 4.44389 4.58770 4.64065 4.75874 4.78407 4.80696 4.97210 5.02480 5.07979 5.10385 5.15706 5.39160 5.46747 5.48097 5.66274 5.66937 5.83126 6.01399 6.16951 6.47255 6.97819 7.07505 7.13203 7.77477 8.76426 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.016958 B = 0.002503 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.720159 B =11182.067031 C =12558.475806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.022 4.022 3 Si 1.018 2.982 4 H -0.254 1.254 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.413 4.413 8 H 0.102 0.898 9 O -0.227 6.227 10 C 0.132 3.868 11 C -0.215 4.215 12 C -0.053 4.053 13 C -0.200 4.200 14 C 0.187 3.813 15 N -0.664 5.664 16 C 0.511 3.489 17 O -0.557 6.557 18 C -0.120 4.120 19 C -0.062 4.062 20 C -0.042 4.042 21 C -0.170 4.170 22 C 0.087 3.913 23 N -0.520 5.520 24 C 0.087 3.913 25 C -0.173 4.173 26 C -0.262 4.262 27 H 0.273 0.727 28 H 0.118 0.882 29 H 0.153 0.847 30 H 0.132 0.868 31 H 0.424 0.576 32 H 0.124 0.876 33 H 0.118 0.882 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.154 0.846 37 H 0.174 0.826 38 H 0.172 0.828 39 H 0.150 0.850 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.670 -11.107 -3.457 25.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.178 1.178 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.489 4.489 8 H 0.120 0.880 9 O -0.133 6.133 10 C 0.081 3.919 11 C -0.235 4.235 12 C -0.071 4.071 13 C -0.220 4.220 14 C 0.092 3.908 15 N -0.310 5.310 16 C 0.301 3.699 17 O -0.435 6.435 18 C -0.160 4.160 19 C -0.100 4.100 20 C -0.050 4.050 21 C -0.190 4.190 22 C -0.069 4.069 23 N -0.230 5.230 24 C -0.069 4.069 25 C -0.192 4.192 26 C -0.283 4.283 27 H 0.082 0.918 28 H 0.136 0.864 29 H 0.171 0.829 30 H 0.150 0.850 31 H 0.262 0.738 32 H 0.142 0.858 33 H 0.137 0.863 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.172 0.828 37 H 0.191 0.809 38 H 0.189 0.811 39 H 0.168 0.832 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 22.915 -11.539 -3.130 25.847 hybrid contribution -0.949 1.197 0.095 1.531 sum 21.966 -10.342 -3.036 24.468 Atomic orbital electron populations 1.70182 1.08063 1.28892 1.48592 1.26595 0.96834 1.02764 0.95804 0.84655 0.77411 0.74229 0.79981 1.17760 1.19882 1.18317 1.21747 0.92462 0.81344 1.53386 0.88035 1.83985 1.35588 1.12520 1.81187 1.19637 0.90937 0.87991 0.93332 1.20484 1.00660 0.90141 1.12231 1.20930 0.93126 0.97520 0.95543 1.20862 0.94814 0.96337 1.10031 1.17463 0.83389 0.92952 0.96967 1.43579 1.04187 1.30789 1.52443 1.21516 0.89867 0.79838 0.78719 1.90725 1.78416 1.38478 1.35868 1.21644 0.87761 1.02193 1.04384 1.20292 0.89209 0.99095 1.01386 1.20366 0.95826 0.94555 0.94238 1.22328 0.97435 1.00879 0.98317 1.23160 0.90160 0.95366 0.98218 1.67695 1.40521 1.08290 1.06484 1.23127 0.94928 0.95519 0.93349 1.22323 0.94269 1.00870 1.01758 1.20867 0.94061 0.98311 1.15087 0.91832 0.86411 0.82899 0.84973 0.73797 0.85828 0.86341 0.90404 0.89919 0.82833 0.80934 0.81106 0.83197 0.85268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.58 13.67 21.61 0.30 -55.28 16 2 C -0.02 -1.23 5.49 84.83 0.47 -0.77 16 3 Si 1.02 41.43 29.55 68.60 2.03 43.46 16 4 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 5 H -0.27 -10.84 7.11 99.48 0.71 -10.14 16 6 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 7 C -0.41 -23.42 9.44 67.92 0.64 -22.78 16 8 H 0.10 5.20 5.30 -2.91 -0.02 5.19 16 9 O -0.23 -13.41 9.76 -22.79 -0.22 -13.63 16 10 C 0.13 6.53 6.64 22.56 0.15 6.68 16 11 C -0.22 -9.25 9.99 22.41 0.22 -9.03 16 12 C -0.05 -1.87 10.03 22.23 0.22 -1.64 16 13 C -0.20 -7.03 8.65 22.43 0.19 -6.83 16 14 C 0.19 6.62 6.27 38.14 0.24 6.86 16 15 N -0.66 -16.84 5.34 -303.55 -1.62 -18.46 16 16 C 0.51 11.89 7.57 87.66 0.66 12.55 16 17 O -0.56 -17.47 13.69 -3.08 -0.04 -17.51 16 18 C -0.12 -1.55 5.68 29.85 0.17 -1.38 16 19 C -0.06 -0.87 4.68 29.85 0.14 -0.73 16 20 C -0.04 -0.55 5.17 -19.67 -0.10 -0.65 16 21 C -0.17 -2.05 9.82 22.36 0.22 -1.84 16 22 C 0.09 1.21 11.18 84.68 0.95 2.15 16 23 N -0.52 -9.19 10.36 -195.84 -2.03 -11.22 16 24 C 0.09 1.25 11.18 84.68 0.95 2.20 16 25 C -0.17 -2.21 9.82 22.36 0.22 -1.99 16 26 C -0.26 -11.10 9.04 22.51 0.20 -10.89 16 27 H 0.27 15.14 8.31 -92.70 -0.77 14.37 16 28 H 0.12 4.94 8.06 -2.91 -0.02 4.92 16 29 H 0.15 4.23 8.06 -2.91 -0.02 4.21 16 30 H 0.13 4.36 6.43 -2.91 -0.02 4.34 16 31 H 0.42 7.87 8.82 -92.71 -0.82 7.05 16 32 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.08 1.26 8.06 -2.39 -0.02 1.24 16 35 H 0.08 1.25 8.06 -2.39 -0.02 1.23 16 36 H 0.15 1.21 8.06 -2.91 -0.02 1.18 16 37 H 0.17 1.52 8.06 -2.91 -0.02 1.50 16 38 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 39 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 40 H 0.13 5.37 5.71 -2.91 -0.02 5.35 16 Total: -1.00 -77.39 349.68 4.22 -73.18 By element: Atomic # 1 Polarization: 27.29 SS G_CDS: 0.26 Total: 27.56 kcal Atomic # 6 Polarization: -33.64 SS G_CDS: 5.54 Total: -28.09 kcal Atomic # 7 Polarization: -81.61 SS G_CDS: -3.35 Total: -84.96 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -0.26 Total: -31.14 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -77.39 4.22 -73.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729320646.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.315 kcal (2) G-P(sol) polarization free energy of solvation -77.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds