Wall clock time and date at job start Fri Apr 10 2020 22:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86808 * 119.99891 * 2 1 4 4 H 1.48496 * 109.46994 * 270.00058 * 3 2 1 5 5 H 1.48500 * 109.46852 * 30.00232 * 3 2 1 6 6 H 1.48497 * 109.46843 * 149.99795 * 3 2 1 7 7 C 1.38646 * 120.00352 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99713 * 0.02562 * 7 2 1 9 9 O 1.34828 * 120.00190 * 180.02562 * 7 2 1 10 10 C 1.35756 * 117.00131 * 185.06066 * 9 7 2 11 11 C 1.38880 * 120.06617 * 354.45765 * 10 9 7 12 12 C 1.38103 * 119.93095 * 180.02562 * 11 10 9 13 13 C 1.38305 * 120.06891 * 0.02868 * 12 11 10 14 14 C 1.50692 * 119.93072 * 179.97438 * 13 12 11 15 15 N 1.46496 * 109.47523 * 89.99617 * 14 13 12 16 16 C 1.34779 * 119.99927 * 179.97438 * 15 14 13 17 17 O 1.21279 * 120.00254 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.99505 * 180.02562 * 16 15 14 19 19 C 1.50706 * 109.46718 * 180.02562 * 18 16 15 20 20 C 1.38672 * 120.41715 * 270.25196 * 19 18 16 21 21 C 1.38628 * 118.41519 * 180.24391 * 20 19 18 22 22 C 1.38228 * 119.16538 * 359.75267 * 21 20 19 23 23 N 1.31856 * 120.76197 * 359.97438 * 22 21 20 24 24 C 1.31881 * 121.72340 * 359.97438 * 23 22 21 25 25 C 1.38305 * 120.13241 * 0.24946 * 13 12 11 26 26 C 1.38090 * 120.07400 * 359.44835 * 25 13 12 27 27 H 0.96996 * 119.99583 * 359.97438 * 1 2 3 28 28 H 1.08003 * 120.03808 * 0.02562 * 11 10 9 29 29 H 1.08000 * 119.96300 * 180.02562 * 12 11 10 30 30 H 1.09005 * 109.47036 * 329.99564 * 14 13 12 31 31 H 1.09006 * 109.46651 * 209.99916 * 14 13 12 32 32 H 0.97000 * 120.00108 * 0.02562 * 15 14 13 33 33 H 1.08998 * 109.47547 * 60.00810 * 18 16 15 34 34 H 1.09006 * 109.47575 * 300.00212 * 18 16 15 35 35 H 1.07997 * 120.79205 * 359.97016 * 20 19 18 36 36 H 1.08007 * 120.41856 * 179.73132 * 21 20 19 37 37 H 1.08004 * 119.61957 * 180.02562 * 22 21 20 38 38 H 1.08001 * 119.61261 * 179.97438 * 24 23 22 39 39 H 1.08007 * 119.95934 * 179.71091 * 25 13 12 40 40 H 1.08005 * 120.04063 * 180.26873 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0465 -1.4000 5 1 1.4470 2.6527 0.7001 6 1 3.5471 1.4402 0.7001 7 6 2.0089 -1.2007 -0.0005 8 1 1.4689 -2.1360 -0.0014 9 8 3.3572 -1.2006 0.0000 10 6 3.9736 -2.4054 -0.1073 11 6 3.2236 -3.5742 -0.0953 12 6 3.8536 -4.7984 -0.2041 13 6 5.2300 -4.8611 -0.3242 14 6 5.9143 -6.1985 -0.4421 15 7 6.0188 -6.5708 -1.8552 16 6 6.6001 -7.7357 -2.2039 17 8 7.0362 -8.4760 -1.3480 18 6 6.7080 -8.1183 -3.6575 19 6 7.3922 -9.4559 -3.7753 20 6 8.7721 -9.5310 -3.8905 21 6 9.3577 -10.7825 -4.0016 22 6 8.5530 -11.9063 -3.9886 23 7 7.2442 -11.7973 -3.8719 24 6 6.6531 -10.6234 -3.7632 25 6 5.9801 -3.6991 -0.3307 26 6 5.3555 -2.4718 -0.2285 27 1 -0.4849 0.8400 0.0004 28 1 2.1488 -3.5260 -0.0011 29 1 3.2709 -5.7076 -0.1953 30 1 5.3336 -6.9519 0.0901 31 1 6.9123 -6.1355 -0.0082 32 1 5.6703 -5.9786 -2.5398 33 1 7.2887 -7.3648 -4.1895 34 1 5.7102 -8.1815 -4.0918 35 1 9.3758 -8.6355 -3.8981 36 1 10.4293 -10.8784 -4.0973 37 1 9.0016 -12.8851 -4.0742 38 1 5.5783 -10.5737 -3.6698 39 1 7.0552 -3.7516 -0.4200 40 1 5.9414 -1.5645 -0.2380 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000732283720.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:23 Heat of formation + Delta-G solvation = -6.721063 kcal Electronic energy + Delta-G solvation = -23423.928479 eV Core-core repulsion = 19783.225836 eV Total energy + Delta-G solvation = -3640.702643 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.64793 -39.63488 -39.12126 -37.09031 -34.55096 -33.82654 -32.51673 -32.18196 -30.50433 -30.30886 -28.25198 -25.99778 -24.55976 -23.83259 -22.66064 -22.22726 -20.67261 -20.47175 -18.03869 -17.62782 -17.35088 -17.12969 -16.74053 -16.25904 -15.42573 -15.12432 -14.85976 -14.67813 -14.20107 -14.10297 -13.94578 -13.67901 -13.58524 -13.33420 -13.28490 -13.14123 -12.79162 -12.46314 -12.30034 -12.02367 -11.80722 -11.52203 -11.01903 -10.88627 -10.81554 -10.26113 -10.20302 -9.95210 -9.71061 -9.52522 -9.22620 -9.08508 -8.98301 -8.43042 -7.52588 -6.53335 -4.20473 0.82760 1.03740 1.90588 1.97808 2.53116 3.13315 3.17603 3.22821 3.32063 3.64944 4.13476 4.13544 4.35919 4.38442 4.49620 4.69071 4.70337 4.72845 4.78733 4.98410 5.03530 5.10346 5.12447 5.29273 5.38116 5.49576 5.50930 5.67156 5.81133 5.82356 5.95652 5.98472 6.19760 6.37659 6.42031 6.42803 6.62937 6.85130 7.07491 7.14081 7.44557 7.47744 7.66820 7.72236 7.90517 8.13875 8.81055 9.41289 10.53697 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.036926 B = 0.002021 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.087863 B =13848.968806 C =14057.312814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.392 4.392 8 H 0.108 0.892 9 O -0.212 6.212 10 C 0.166 3.834 11 C -0.224 4.224 12 C -0.052 4.052 13 C -0.207 4.207 14 C 0.178 3.822 15 N -0.722 5.722 16 C 0.510 3.490 17 O -0.540 6.540 18 C -0.101 4.101 19 C -0.114 4.114 20 C -0.062 4.062 21 C -0.172 4.172 22 C 0.094 3.906 23 N -0.485 5.485 24 C 0.113 3.887 25 C -0.056 4.056 26 C -0.195 4.195 27 H 0.281 0.719 28 H 0.135 0.865 29 H 0.111 0.889 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.403 0.597 33 H 0.105 0.895 34 H 0.108 0.892 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.154 0.846 38 H 0.153 0.847 39 H 0.114 0.886 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.352 -15.248 -9.040 23.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.467 4.467 8 H 0.125 0.875 9 O -0.116 6.116 10 C 0.113 3.887 11 C -0.243 4.243 12 C -0.071 4.071 13 C -0.209 4.209 14 C 0.056 3.944 15 N -0.374 5.374 16 C 0.296 3.704 17 O -0.417 6.417 18 C -0.142 4.142 19 C -0.117 4.117 20 C -0.088 4.088 21 C -0.192 4.192 22 C -0.063 4.063 23 N -0.193 5.193 24 C -0.044 4.044 25 C -0.075 4.075 26 C -0.214 4.214 27 H 0.091 0.909 28 H 0.152 0.848 29 H 0.129 0.871 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.237 0.763 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.171 0.829 38 H 0.170 0.830 39 H 0.132 0.868 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 15.013 -16.165 -8.363 23.594 hybrid contribution 0.419 1.851 -0.252 1.915 sum 15.432 -14.314 -8.616 22.743 Atomic orbital electron populations 1.69642 1.05600 1.28710 1.47167 1.24495 0.95056 0.98951 0.95458 0.86170 0.80338 0.81312 0.79033 1.19794 1.20660 1.18330 1.20784 0.76735 0.96735 1.52481 0.87480 1.83576 1.22790 1.25845 1.79423 1.19189 0.91745 0.85517 0.92222 1.21287 1.01277 0.91756 1.09991 1.20705 0.93322 0.96861 0.96199 1.19270 0.93799 0.93476 1.14308 1.19995 0.99926 0.93446 0.81068 1.46331 1.60393 1.21083 1.09557 1.20473 0.77940 0.81314 0.90694 1.90729 1.47808 1.51157 1.52007 1.20631 1.03288 0.95279 0.94958 1.20311 0.94534 0.95547 1.01267 1.21445 0.94048 0.98279 0.95041 1.22109 1.01443 0.93415 1.02240 1.22761 0.89337 0.98853 0.95344 1.67688 1.12165 1.27655 1.11820 1.22613 1.00360 0.87022 0.94401 1.20528 0.98390 0.91214 0.97382 1.20213 0.91950 0.97908 1.11375 0.90873 0.84765 0.87084 0.91436 0.91506 0.76261 0.87632 0.87425 0.84990 0.84797 0.82867 0.82977 0.86807 0.86359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.37 13.96 55.48 0.77 -23.60 16 2 C 0.06 1.74 5.49 -17.52 -0.10 1.65 16 3 Si 0.91 20.82 28.62 -169.99 -4.86 15.95 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 6 H -0.26 -5.98 7.11 56.52 0.40 -5.58 16 7 C -0.39 -10.55 9.95 30.88 0.31 -10.25 16 8 H 0.11 2.94 5.44 -52.48 -0.29 2.65 16 9 O -0.21 -5.31 8.59 0.03 0.00 -5.31 16 10 C 0.17 3.57 6.65 -39.11 -0.26 3.31 16 11 C -0.22 -4.44 9.17 -39.39 -0.36 -4.80 16 12 C -0.05 -0.85 9.69 -39.61 -0.38 -1.23 16 13 C -0.21 -3.02 5.25 -104.58 -0.55 -3.57 16 14 C 0.18 2.25 5.80 -5.20 -0.03 2.22 16 15 N -0.72 -7.69 5.55 -61.47 -0.34 -8.03 16 16 C 0.51 5.72 7.82 -10.98 -0.09 5.63 16 17 O -0.54 -8.35 16.03 5.56 0.09 -8.26 16 18 C -0.10 -0.76 5.85 -29.03 -0.17 -0.93 16 19 C -0.11 -1.07 4.39 -104.48 -0.46 -1.53 16 20 C -0.06 -0.54 9.86 -39.28 -0.39 -0.92 16 21 C -0.17 -1.38 10.11 -39.44 -0.40 -1.78 16 22 C 0.09 0.85 11.18 -17.55 -0.20 0.66 16 23 N -0.49 -5.51 10.36 -13.25 -0.14 -5.64 16 24 C 0.11 1.18 10.86 -17.55 -0.19 0.99 16 25 C -0.06 -0.85 9.69 -39.61 -0.38 -1.23 16 26 C -0.20 -3.52 9.99 -39.40 -0.39 -3.91 16 27 H 0.28 7.23 8.31 -40.82 -0.34 6.89 16 28 H 0.13 2.84 5.64 -52.48 -0.30 2.54 16 29 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 30 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 31 H 0.07 0.86 8.08 -51.93 -0.42 0.44 16 32 H 0.40 3.59 8.46 -40.82 -0.35 3.25 16 33 H 0.11 0.56 8.10 -51.93 -0.42 0.14 16 34 H 0.11 0.59 8.09 -51.93 -0.42 0.17 16 35 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.13 0.70 8.06 -52.48 -0.42 0.28 16 37 H 0.15 0.96 8.06 -52.48 -0.42 0.53 16 38 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 39 H 0.11 1.42 8.06 -52.48 -0.42 0.99 16 40 H 0.12 2.00 8.06 -52.48 -0.42 1.57 16 LS Contribution 352.81 15.07 5.32 5.32 Total: -1.00 -32.07 352.81 -7.90 -39.97 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -4.70 Total: 5.30 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -4.04 Total: -15.70 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.30 Total: -37.27 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.09 Total: -13.57 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.86 Total: 15.95 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.07 -7.90 -39.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732283720.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.252 kcal (2) G-P(sol) polarization free energy of solvation -32.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds