Wall clock time and date at job start Fri Apr 10 2020 22:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86808 * 119.99891 * 2 1 4 4 H 1.48496 * 109.46994 * 270.00058 * 3 2 1 5 5 H 1.48500 * 109.46852 * 30.00232 * 3 2 1 6 6 H 1.48497 * 109.46843 * 149.99795 * 3 2 1 7 7 C 1.38646 * 120.00352 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99713 * 0.02562 * 7 2 1 9 9 O 1.34828 * 120.00190 * 180.02562 * 7 2 1 10 10 C 1.35756 * 117.00131 * 185.06066 * 9 7 2 11 11 C 1.38880 * 120.06617 * 354.45765 * 10 9 7 12 12 C 1.38103 * 119.93095 * 180.02562 * 11 10 9 13 13 C 1.38305 * 120.06891 * 0.02868 * 12 11 10 14 14 C 1.50692 * 119.93072 * 179.97438 * 13 12 11 15 15 N 1.46496 * 109.47523 * 89.99617 * 14 13 12 16 16 C 1.34779 * 119.99927 * 179.97438 * 15 14 13 17 17 O 1.21279 * 120.00254 * 0.02562 * 16 15 14 18 18 C 1.50699 * 119.99505 * 180.02562 * 16 15 14 19 19 C 1.50706 * 109.46718 * 180.02562 * 18 16 15 20 20 C 1.38672 * 120.41715 * 270.25196 * 19 18 16 21 21 C 1.38628 * 118.41519 * 180.24391 * 20 19 18 22 22 C 1.38228 * 119.16538 * 359.75267 * 21 20 19 23 23 N 1.31856 * 120.76197 * 359.97438 * 22 21 20 24 24 C 1.31881 * 121.72340 * 359.97438 * 23 22 21 25 25 C 1.38305 * 120.13241 * 0.24946 * 13 12 11 26 26 C 1.38090 * 120.07400 * 359.44835 * 25 13 12 27 27 H 0.96996 * 119.99583 * 359.97438 * 1 2 3 28 28 H 1.08003 * 120.03808 * 0.02562 * 11 10 9 29 29 H 1.08000 * 119.96300 * 180.02562 * 12 11 10 30 30 H 1.09005 * 109.47036 * 329.99564 * 14 13 12 31 31 H 1.09006 * 109.46651 * 209.99916 * 14 13 12 32 32 H 0.97000 * 120.00108 * 0.02562 * 15 14 13 33 33 H 1.08998 * 109.47547 * 60.00810 * 18 16 15 34 34 H 1.09006 * 109.47575 * 300.00212 * 18 16 15 35 35 H 1.07997 * 120.79205 * 359.97016 * 20 19 18 36 36 H 1.08007 * 120.41856 * 179.73132 * 21 20 19 37 37 H 1.08004 * 119.61957 * 180.02562 * 22 21 20 38 38 H 1.08001 * 119.61261 * 179.97438 * 24 23 22 39 39 H 1.08007 * 119.95934 * 179.71091 * 25 13 12 40 40 H 1.08005 * 120.04063 * 180.26873 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0465 -1.4000 5 1 1.4470 2.6527 0.7001 6 1 3.5471 1.4402 0.7001 7 6 2.0089 -1.2007 -0.0005 8 1 1.4689 -2.1360 -0.0014 9 8 3.3572 -1.2006 0.0000 10 6 3.9736 -2.4054 -0.1073 11 6 3.2236 -3.5742 -0.0953 12 6 3.8536 -4.7984 -0.2041 13 6 5.2300 -4.8611 -0.3242 14 6 5.9143 -6.1985 -0.4421 15 7 6.0188 -6.5708 -1.8552 16 6 6.6001 -7.7357 -2.2039 17 8 7.0362 -8.4760 -1.3480 18 6 6.7080 -8.1183 -3.6575 19 6 7.3922 -9.4559 -3.7753 20 6 8.7721 -9.5310 -3.8905 21 6 9.3577 -10.7825 -4.0016 22 6 8.5530 -11.9063 -3.9886 23 7 7.2442 -11.7973 -3.8719 24 6 6.6531 -10.6234 -3.7632 25 6 5.9801 -3.6991 -0.3307 26 6 5.3555 -2.4718 -0.2285 27 1 -0.4849 0.8400 0.0004 28 1 2.1488 -3.5260 -0.0011 29 1 3.2709 -5.7076 -0.1953 30 1 5.3336 -6.9519 0.0901 31 1 6.9123 -6.1355 -0.0082 32 1 5.6703 -5.9786 -2.5398 33 1 7.2887 -7.3648 -4.1895 34 1 5.7102 -8.1815 -4.0918 35 1 9.3758 -8.6355 -3.8981 36 1 10.4293 -10.8784 -4.0973 37 1 9.0016 -12.8851 -4.0742 38 1 5.5783 -10.5737 -3.6698 39 1 7.0552 -3.7516 -0.4200 40 1 5.9414 -1.5645 -0.2380 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000732283720.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:23 Heat of formation + Delta-G solvation = -27.585946 kcal Electronic energy + Delta-G solvation = -23424.833248 eV Core-core repulsion = 19783.225836 eV Total energy + Delta-G solvation = -3641.607412 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.39220 -40.96258 -40.22263 -38.59193 -35.66098 -34.53284 -34.43199 -32.82633 -31.89648 -31.61402 -29.10035 -27.59562 -25.94515 -24.48537 -23.72433 -23.39931 -22.06077 -21.35396 -19.84580 -19.15324 -18.25086 -17.92266 -17.42469 -17.18611 -16.75083 -16.29147 -15.93323 -15.81669 -15.66739 -15.60536 -15.22514 -14.77739 -14.48922 -14.37217 -14.29791 -14.15232 -14.05688 -13.91649 -13.55445 -13.11416 -12.95794 -12.60033 -12.47573 -12.41264 -12.31698 -11.94033 -11.30545 -11.12378 -10.90353 -10.66522 -10.38861 -10.05430 -9.89037 -9.83615 -9.09097 -8.50854 -6.23974 0.17066 0.38874 0.50537 0.54452 1.32690 1.35820 1.52350 1.68356 2.27418 2.30523 2.78189 2.95083 3.06793 3.15569 3.53117 3.75375 3.83716 3.95140 4.01140 4.08447 4.12754 4.13859 4.15016 4.42959 4.52191 4.54286 4.61275 4.73787 4.79407 4.83544 4.91324 4.95892 5.21249 5.21997 5.33020 5.33812 5.45215 5.53996 5.70626 5.78652 5.81852 5.88208 6.19037 6.61905 6.83267 7.05637 7.29282 7.56156 8.60299 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.036926 B = 0.002021 C = 0.001991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.087863 B =13848.968806 C =14057.312814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.010 3.990 3 Si 0.971 3.029 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.262 1.262 7 C -0.399 4.399 8 H 0.083 0.917 9 O -0.242 6.242 10 C 0.128 3.872 11 C -0.239 4.239 12 C -0.051 4.051 13 C -0.173 4.173 14 C 0.183 3.817 15 N -0.714 5.714 16 C 0.513 3.487 17 O -0.584 6.584 18 C -0.092 4.092 19 C -0.124 4.124 20 C -0.073 4.073 21 C -0.171 4.171 22 C 0.078 3.922 23 N -0.518 5.518 24 C 0.090 3.910 25 C -0.044 4.044 26 C -0.192 4.192 27 H 0.285 0.715 28 H 0.108 0.892 29 H 0.133 0.867 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.414 0.586 33 H 0.136 0.864 34 H 0.130 0.870 35 H 0.153 0.847 36 H 0.162 0.838 37 H 0.174 0.826 38 H 0.158 0.842 39 H 0.155 0.845 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.769 -15.906 -10.150 26.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.189 4.189 3 Si 0.793 3.207 4 H -0.189 1.189 5 H -0.195 1.195 6 H -0.186 1.186 7 C -0.475 4.475 8 H 0.100 0.900 9 O -0.149 6.149 10 C 0.078 3.922 11 C -0.258 4.258 12 C -0.069 4.069 13 C -0.174 4.174 14 C 0.060 3.940 15 N -0.367 5.367 16 C 0.301 3.699 17 O -0.464 6.464 18 C -0.132 4.132 19 C -0.126 4.126 20 C -0.099 4.099 21 C -0.191 4.191 22 C -0.078 4.078 23 N -0.227 5.227 24 C -0.067 4.067 25 C -0.063 4.063 26 C -0.211 4.211 27 H 0.094 0.906 28 H 0.126 0.874 29 H 0.151 0.849 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.251 0.749 33 H 0.154 0.846 34 H 0.148 0.852 35 H 0.171 0.829 36 H 0.180 0.820 37 H 0.192 0.808 38 H 0.175 0.825 39 H 0.173 0.827 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 18.451 -16.849 -9.500 26.732 hybrid contribution -0.390 1.660 0.065 1.707 sum 18.061 -15.189 -9.435 25.415 Atomic orbital electron populations 1.69730 1.06935 1.29642 1.49860 1.25296 0.95879 1.02231 0.95494 0.85212 0.78787 0.77375 0.79324 1.18935 1.19477 1.18630 1.20699 0.78034 0.96132 1.52678 0.89978 1.83523 1.21286 1.27576 1.82552 1.19758 0.93312 0.85034 0.94053 1.21271 1.00302 0.93096 1.11117 1.20920 0.94448 0.96160 0.95407 1.19539 0.92943 0.94678 1.10212 1.19868 0.99941 0.91730 0.82511 1.46145 1.60289 1.21375 1.08844 1.21018 0.76615 0.80443 0.91820 1.90723 1.49725 1.52396 1.53592 1.20672 1.05050 0.95035 0.92471 1.20516 0.95082 0.95906 1.01116 1.21838 0.94127 0.99394 0.94523 1.22457 1.02831 0.92892 1.00910 1.23221 0.88956 1.00460 0.95202 1.67659 1.13516 1.28503 1.13019 1.22853 1.01019 0.87491 0.95289 1.20949 1.00363 0.89786 0.95178 1.20527 0.90426 0.99876 1.10239 0.90561 0.87362 0.84919 0.91776 0.90699 0.74908 0.84621 0.85179 0.82910 0.82014 0.80848 0.82467 0.82747 0.85090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.74 13.96 21.61 0.30 -53.44 16 2 C 0.01 0.55 5.49 84.83 0.47 1.01 16 3 Si 0.97 43.93 28.62 68.60 1.96 45.90 16 4 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 6 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.40 -22.67 9.95 67.92 0.68 -21.99 16 8 H 0.08 4.89 5.44 -2.91 -0.02 4.87 16 9 O -0.24 -12.52 8.59 -22.80 -0.20 -12.72 16 10 C 0.13 5.54 6.65 22.58 0.15 5.69 16 11 C -0.24 -9.66 9.17 22.39 0.21 -9.46 16 12 C -0.05 -1.56 9.69 22.25 0.22 -1.35 16 13 C -0.17 -4.41 5.25 -19.84 -0.10 -4.52 16 14 C 0.18 3.90 5.80 85.63 0.50 4.40 16 15 N -0.71 -12.34 5.55 -466.80 -2.59 -14.93 16 16 C 0.51 9.79 7.82 87.66 0.69 10.48 16 17 O -0.58 -16.70 16.03 -3.03 -0.05 -16.75 16 18 C -0.09 -1.06 5.85 29.10 0.17 -0.89 16 19 C -0.12 -2.04 4.39 -19.77 -0.09 -2.13 16 20 C -0.07 -1.06 9.86 22.47 0.22 -0.84 16 21 C -0.17 -2.33 10.11 22.36 0.23 -2.10 16 22 C 0.08 1.31 11.18 84.69 0.95 2.26 16 23 N -0.52 -11.45 10.36 -195.84 -2.03 -13.48 16 24 C 0.09 1.79 10.86 84.67 0.92 2.71 16 25 C -0.04 -1.15 9.69 22.25 0.22 -0.94 16 26 C -0.19 -6.50 9.99 22.39 0.22 -6.28 16 27 H 0.28 15.25 8.31 -92.71 -0.77 14.47 16 28 H 0.11 4.93 5.64 -2.91 -0.02 4.91 16 29 H 0.13 3.50 8.06 -2.91 -0.02 3.47 16 30 H 0.06 1.49 8.08 -2.38 -0.02 1.47 16 31 H 0.07 1.58 8.08 -2.38 -0.02 1.56 16 32 H 0.41 5.53 8.46 -92.71 -0.78 4.75 16 33 H 0.14 0.77 8.10 -2.39 -0.02 0.75 16 34 H 0.13 0.93 8.09 -2.38 -0.02 0.91 16 35 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 36 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 37 H 0.17 1.92 8.06 -2.91 -0.02 1.89 16 38 H 0.16 2.65 8.06 -2.91 -0.02 2.63 16 39 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 40 H 0.13 4.10 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -74.09 352.81 3.32 -70.77 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 0.29 Total: 18.58 kcal Atomic # 6 Polarization: -29.56 SS G_CDS: 5.63 Total: -23.93 kcal Atomic # 7 Polarization: -77.53 SS G_CDS: -4.32 Total: -81.85 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -0.24 Total: -29.46 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.96 Total: 45.90 kcal Total: -74.09 3.32 -70.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000732283720.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.184 kcal (2) G-P(sol) polarization free energy of solvation -74.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds