Wall clock time and date at job start Fri Apr 10 2020 22:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39868 * 126.03767 * 2 1 4 4 N 1.30844 * 108.19764 * 179.97438 * 3 2 1 5 5 N 1.40078 * 108.20890 * 0.02562 * 4 3 2 6 6 C 1.46495 * 126.04021 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47240 * 305.02409 * 6 5 4 8 8 C 1.53003 * 109.47484 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47304 * 180.02562 * 8 7 6 10 10 C 1.52994 * 109.46926 * 179.97438 * 9 8 7 11 11 O 1.45201 * 109.47156 * 179.97438 * 10 9 8 12 12 C 1.34229 * 117.00568 * 180.02562 * 11 10 9 13 13 O 1.20827 * 119.99587 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.00486 * 179.97438 * 12 11 10 15 15 S 1.80999 * 109.47267 * 179.97438 * 14 12 11 16 16 C 1.76195 * 99.99871 * 180.02562 * 15 14 12 17 17 H 1.08003 * 120.00221 * 359.97438 * 16 15 14 18 18 C 1.38797 * 119.99839 * 180.02562 * 16 15 14 19 19 N 1.31634 * 120.00126 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00284 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47331 * 89.99448 * 20 18 16 22 22 H 1.48494 * 109.47277 * 209.99979 * 20 18 16 23 23 H 1.48504 * 109.46650 * 330.00099 * 20 18 16 24 24 C 1.34957 * 107.92650 * 0.02562 * 5 4 3 25 25 H 1.09000 * 109.47551 * 90.02427 * 1 2 3 26 26 H 1.09002 * 109.46861 * 210.02340 * 1 2 3 27 27 H 1.09005 * 109.47196 * 330.02268 * 1 2 3 28 28 H 1.07995 * 125.89923 * 0.21784 * 3 2 1 29 29 H 1.09000 * 109.47058 * 65.02749 * 6 5 4 30 30 H 1.09005 * 109.47365 * 185.02206 * 6 5 4 31 31 H 1.09000 * 109.47373 * 300.00147 * 7 6 5 32 32 H 1.09005 * 109.47107 * 59.99639 * 7 6 5 33 33 H 1.09002 * 109.46848 * 300.00025 * 8 7 6 34 34 H 1.08995 * 109.47108 * 59.99851 * 8 7 6 35 35 H 1.09002 * 109.46935 * 299.99662 * 9 8 7 36 36 H 1.08996 * 109.46968 * 60.00021 * 9 8 7 37 37 H 1.09002 * 109.47138 * 299.99660 * 10 9 8 38 38 H 1.09006 * 109.47172 * 60.00232 * 10 9 8 39 39 H 1.09001 * 109.46689 * 300.00265 * 14 12 11 40 40 H 1.08998 * 109.46927 * 60.00023 * 14 12 11 41 41 H 0.96999 * 120.00013 * 179.97438 * 19 18 16 42 42 H 1.07995 * 126.12756 * 180.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7302 0.0006 5 7 3.5844 -0.6706 0.0003 6 6 4.7745 -1.5248 0.0003 7 6 5.6716 -1.1495 -1.1809 8 6 6.9149 -2.0413 -1.1806 9 6 7.8124 -1.6655 -2.3615 10 6 9.0559 -2.5568 -2.3608 11 8 9.9073 -2.2007 -3.4817 12 6 11.0475 -2.8942 -3.6256 13 8 11.3251 -3.7697 -2.8405 14 6 11.9813 -2.5810 -4.7662 15 16 13.4188 -3.6781 -4.6877 16 6 14.3153 -3.1086 -6.0936 17 1 13.9195 -2.3054 -6.6975 18 6 15.5296 -3.6930 -6.4256 19 7 16.1992 -3.2680 -7.4762 20 14 16.2132 -5.0837 -5.3825 21 1 15.7263 -6.3836 -5.9099 22 1 17.6971 -5.0548 -5.4300 23 1 15.7595 -4.9181 -3.9782 24 6 2.3031 -1.0942 -0.0009 25 1 -0.3634 -0.0004 -1.0276 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3634 0.8902 0.5135 28 1 1.9950 2.1577 0.0033 29 1 5.3226 -1.3844 0.9319 30 1 4.4727 -2.5684 -0.0899 31 1 5.1235 -1.2900 -2.1125 32 1 5.9734 -0.1060 -1.0907 33 1 7.4629 -1.9003 -0.2490 34 1 6.6135 -3.0849 -1.2706 35 1 7.2646 -1.8062 -3.2933 36 1 8.1137 -0.6220 -2.2710 37 1 9.6035 -2.4158 -1.4289 38 1 8.7548 -3.6006 -2.4510 39 1 11.4614 -2.7297 -5.7126 40 1 12.3111 -1.5448 -4.6917 41 1 17.0481 -3.6761 -7.7081 42 1 1.9724 -2.1223 -0.0010 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733435928.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:26 Heat of formation + Delta-G solvation = -33.933192 kcal Electronic energy + Delta-G solvation = -21390.706272 eV Core-core repulsion = 17884.267574 eV Total energy + Delta-G solvation = -3506.438698 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.56437 -40.13979 -37.05854 -36.04431 -33.81425 -32.50268 -32.03474 -30.79050 -29.64268 -27.29313 -25.72700 -25.47014 -23.10920 -21.57516 -21.12013 -21.00211 -20.44889 -17.94821 -17.31889 -17.15007 -16.83559 -16.14315 -15.80616 -15.36682 -15.02071 -14.82664 -14.37943 -14.11481 -13.92550 -13.68489 -13.51366 -13.24082 -13.10558 -12.90511 -12.83838 -12.40218 -12.27236 -12.15463 -11.85258 -11.65626 -11.43831 -11.31057 -11.10788 -11.06231 -10.84703 -10.74175 -10.47326 -10.17808 -9.88853 -9.79287 -9.06627 -8.70057 -8.62902 -7.03612 -6.34502 -4.08913 1.51488 2.10354 2.41725 2.42304 2.52491 3.08852 3.28229 3.44358 3.50488 3.96987 4.26477 4.28968 4.39588 4.50007 4.50367 4.66918 4.68912 4.78265 4.87966 4.95020 5.00893 5.04315 5.06640 5.11914 5.18398 5.31532 5.34328 5.38379 5.46143 5.50048 5.61653 5.64822 5.70378 5.76302 5.83649 5.90907 5.95272 6.29661 6.58639 6.63661 7.33476 7.88322 8.03399 8.37055 9.10572 10.74553 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.056972 B = 0.001514 C = 0.001493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.347412 B =18487.625779 C =18752.735252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.245 4.245 3 C 0.046 3.954 4 N -0.292 5.292 5 N -0.371 5.371 6 C 0.133 3.867 7 C -0.129 4.129 8 C -0.114 4.114 9 C -0.118 4.118 10 C 0.066 3.934 11 O -0.360 6.360 12 C 0.478 3.522 13 O -0.491 6.491 14 C -0.100 4.100 15 S -0.141 6.141 16 C -0.523 4.523 17 H 0.092 0.908 18 C 0.098 3.902 19 N -0.877 5.877 20 Si 0.856 3.144 21 H -0.266 1.266 22 H -0.273 1.273 23 H -0.236 1.236 24 C 0.051 3.949 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.181 0.819 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.272 0.728 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.003 4.711 15.719 34.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.257 4.257 3 C -0.140 4.140 4 N -0.113 5.113 5 N -0.153 5.153 6 C 0.012 3.988 7 C -0.167 4.167 8 C -0.153 4.153 9 C -0.156 4.156 10 C -0.008 4.008 11 O -0.278 6.278 12 C 0.320 3.680 13 O -0.377 6.377 14 C -0.248 4.248 15 S 0.086 5.914 16 C -0.670 4.670 17 H 0.110 0.890 18 C -0.111 4.111 19 N -0.513 5.513 20 Si 0.681 3.319 21 H -0.191 1.191 22 H -0.198 1.198 23 H -0.160 1.160 24 C -0.095 4.095 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.198 0.802 29 H 0.104 0.896 30 H 0.115 0.885 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.082 0.918 42 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -28.163 3.871 16.610 32.925 hybrid contribution -0.654 0.031 -0.604 0.891 sum -28.817 3.902 16.006 33.194 Atomic orbital electron populations 1.20046 0.89348 1.02085 1.01543 1.20168 0.97157 0.91923 1.16443 1.23826 0.89990 0.99863 1.00353 1.77349 1.21230 0.88879 1.23841 1.48664 1.05407 1.04772 1.56418 1.21803 0.83892 0.92429 1.00683 1.21839 0.95626 1.01669 0.97609 1.21418 0.95240 0.99801 0.98803 1.21522 0.94274 1.00457 0.99305 1.22995 0.90315 0.99451 0.88080 1.86495 1.32165 1.59994 1.49101 1.23258 0.80001 0.78986 0.85765 1.90660 1.73579 1.30271 1.43214 1.23010 0.98097 1.06222 0.97458 1.84790 1.17835 1.47873 1.40943 1.22265 1.08382 1.24586 1.11808 0.89050 1.24691 0.95351 0.96511 0.94580 1.69932 1.14941 1.41373 1.25058 0.86746 0.79264 0.82758 0.83134 1.19127 1.19766 1.15986 1.22373 0.84295 1.00074 1.02759 0.92149 0.92246 0.91900 0.80188 0.89590 0.88543 0.91123 0.90063 0.91023 0.91181 0.90627 0.90502 0.91246 0.91298 0.87193 0.87137 0.91809 0.81132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.34 10.37 36.01 0.37 0.04 16 2 C -0.25 -1.76 6.10 -105.05 -0.64 -2.40 16 3 C 0.05 0.38 11.96 -17.36 -0.21 0.17 16 4 N -0.29 -2.97 12.42 30.62 0.38 -2.59 16 5 N -0.37 -3.01 3.68 -61.37 -0.23 -3.23 16 6 C 0.13 0.74 6.51 -4.05 -0.03 0.71 16 7 C -0.13 -0.81 5.40 -26.73 -0.14 -0.96 16 8 C -0.11 -0.69 5.21 -26.73 -0.14 -0.83 16 9 C -0.12 -0.99 5.59 -26.73 -0.15 -1.14 16 10 C 0.07 0.76 5.47 37.15 0.20 0.97 16 11 O -0.36 -5.44 10.22 -39.26 -0.40 -5.84 16 12 C 0.48 8.75 7.98 36.01 0.29 9.03 16 13 O -0.49 -10.20 15.61 -18.75 -0.29 -10.49 16 14 C -0.10 -1.96 6.27 36.01 0.23 -1.73 16 15 S -0.14 -3.50 18.55 -107.50 -1.99 -5.49 16 16 C -0.52 -14.86 10.04 30.94 0.31 -14.55 16 17 H 0.09 2.71 8.03 -52.48 -0.42 2.29 16 18 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 19 N -0.88 -26.13 13.97 55.49 0.78 -25.36 16 20 Si 0.86 21.35 27.74 -169.99 -4.72 16.63 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.24 -5.85 6.74 56.52 0.38 -5.47 16 24 C 0.05 0.35 11.36 -17.22 -0.20 0.15 16 25 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.18 1.00 8.06 -52.49 -0.42 0.58 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.10 0.31 8.07 -51.93 -0.42 -0.11 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.80 8.13 -51.93 -0.42 0.37 16 38 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16 39 H 0.11 2.01 8.14 -51.92 -0.42 1.58 16 40 H 0.11 2.02 8.14 -51.92 -0.42 1.60 16 41 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 42 H 0.17 0.62 8.06 -52.49 -0.42 0.19 16 LS Contribution 375.39 15.07 5.66 5.66 Total: -1.00 -34.34 375.39 -7.78 -42.11 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -6.76 Total: -3.58 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -0.20 Total: -7.81 kcal Atomic # 7 Polarization: -32.11 SS G_CDS: 0.93 Total: -31.18 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.69 Total: -16.34 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.72 Total: 16.63 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -1.99 Total: -5.49 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.34 -7.78 -42.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733435928.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.178 kcal (2) G-P(sol) polarization free energy of solvation -34.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds