Wall clock time and date at job start Fri Apr 10 2020 22:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39868 * 126.03767 * 2 1 4 4 N 1.30844 * 108.19764 * 179.97438 * 3 2 1 5 5 N 1.40078 * 108.20890 * 0.02562 * 4 3 2 6 6 C 1.46495 * 126.04021 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47240 * 305.02409 * 6 5 4 8 8 C 1.53003 * 109.47484 * 179.97438 * 7 6 5 9 9 C 1.53001 * 109.47304 * 180.02562 * 8 7 6 10 10 C 1.52994 * 109.46926 * 179.97438 * 9 8 7 11 11 O 1.45201 * 109.47156 * 179.97438 * 10 9 8 12 12 C 1.34229 * 117.00568 * 180.02562 * 11 10 9 13 13 O 1.20827 * 119.99587 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.00486 * 179.97438 * 12 11 10 15 15 S 1.80999 * 109.47267 * 179.97438 * 14 12 11 16 16 C 1.76195 * 99.99871 * 180.02562 * 15 14 12 17 17 H 1.08003 * 120.00221 * 359.97438 * 16 15 14 18 18 C 1.38797 * 119.99839 * 180.02562 * 16 15 14 19 19 N 1.31634 * 120.00126 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00284 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47331 * 89.99448 * 20 18 16 22 22 H 1.48494 * 109.47277 * 209.99979 * 20 18 16 23 23 H 1.48504 * 109.46650 * 330.00099 * 20 18 16 24 24 C 1.34957 * 107.92650 * 0.02562 * 5 4 3 25 25 H 1.09000 * 109.47551 * 90.02427 * 1 2 3 26 26 H 1.09002 * 109.46861 * 210.02340 * 1 2 3 27 27 H 1.09005 * 109.47196 * 330.02268 * 1 2 3 28 28 H 1.07995 * 125.89923 * 0.21784 * 3 2 1 29 29 H 1.09000 * 109.47058 * 65.02749 * 6 5 4 30 30 H 1.09005 * 109.47365 * 185.02206 * 6 5 4 31 31 H 1.09000 * 109.47373 * 300.00147 * 7 6 5 32 32 H 1.09005 * 109.47107 * 59.99639 * 7 6 5 33 33 H 1.09002 * 109.46848 * 300.00025 * 8 7 6 34 34 H 1.08995 * 109.47108 * 59.99851 * 8 7 6 35 35 H 1.09002 * 109.46935 * 299.99662 * 9 8 7 36 36 H 1.08996 * 109.46968 * 60.00021 * 9 8 7 37 37 H 1.09002 * 109.47138 * 299.99660 * 10 9 8 38 38 H 1.09006 * 109.47172 * 60.00232 * 10 9 8 39 39 H 1.09001 * 109.46689 * 300.00265 * 14 12 11 40 40 H 1.08998 * 109.46927 * 60.00023 * 14 12 11 41 41 H 0.96999 * 120.00013 * 179.97438 * 19 18 16 42 42 H 1.07995 * 126.12756 * 180.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7302 0.0006 5 7 3.5844 -0.6706 0.0003 6 6 4.7745 -1.5248 0.0003 7 6 5.6716 -1.1495 -1.1809 8 6 6.9149 -2.0413 -1.1806 9 6 7.8124 -1.6655 -2.3615 10 6 9.0559 -2.5568 -2.3608 11 8 9.9073 -2.2007 -3.4817 12 6 11.0475 -2.8942 -3.6256 13 8 11.3251 -3.7697 -2.8405 14 6 11.9813 -2.5810 -4.7662 15 16 13.4188 -3.6781 -4.6877 16 6 14.3153 -3.1086 -6.0936 17 1 13.9195 -2.3054 -6.6975 18 6 15.5296 -3.6930 -6.4256 19 7 16.1992 -3.2680 -7.4762 20 14 16.2132 -5.0837 -5.3825 21 1 15.7263 -6.3836 -5.9099 22 1 17.6971 -5.0548 -5.4300 23 1 15.7595 -4.9181 -3.9782 24 6 2.3031 -1.0942 -0.0009 25 1 -0.3634 -0.0004 -1.0276 26 1 -0.3633 -0.8898 0.5142 27 1 -0.3634 0.8902 0.5135 28 1 1.9950 2.1577 0.0033 29 1 5.3226 -1.3844 0.9319 30 1 4.4727 -2.5684 -0.0899 31 1 5.1235 -1.2900 -2.1125 32 1 5.9734 -0.1060 -1.0907 33 1 7.4629 -1.9003 -0.2490 34 1 6.6135 -3.0849 -1.2706 35 1 7.2646 -1.8062 -3.2933 36 1 8.1137 -0.6220 -2.2710 37 1 9.6035 -2.4158 -1.4289 38 1 8.7548 -3.6006 -2.4510 39 1 11.4614 -2.7297 -5.7126 40 1 12.3111 -1.5448 -4.6917 41 1 17.0481 -3.6761 -7.7081 42 1 1.9724 -2.1223 -0.0010 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000733435928.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:25 Heat of formation + Delta-G solvation = -53.352685 kcal Electronic energy + Delta-G solvation = -21391.548364 eV Core-core repulsion = 17884.267574 eV Total energy + Delta-G solvation = -3507.280790 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.08158 -41.51348 -38.03677 -36.95331 -34.70114 -34.43635 -32.55049 -31.80668 -30.78033 -27.97939 -27.78980 -26.08573 -23.83248 -22.44499 -22.11527 -21.59362 -20.96501 -19.93496 -18.71624 -17.93445 -17.68902 -17.31559 -17.02534 -16.79471 -16.09006 -15.98047 -15.42717 -15.15374 -14.94598 -14.65659 -14.33911 -14.16172 -13.96862 -13.88021 -13.56900 -13.37199 -13.27852 -13.04457 -13.02551 -12.81998 -12.70269 -12.45607 -12.35947 -12.11539 -11.88948 -11.74195 -11.60905 -11.46296 -11.36486 -11.19111 -10.64430 -10.36143 -9.20383 -9.07891 -8.53411 -6.27411 0.77330 0.99351 1.06488 1.31462 1.36600 1.49208 1.65658 1.85891 1.88862 2.23087 2.63210 2.84819 3.42762 3.68916 3.84100 3.86725 3.96919 4.02011 4.09005 4.11961 4.29325 4.32734 4.38075 4.39591 4.50274 4.52161 4.59790 4.68145 4.80994 4.82826 4.96124 5.01013 5.02869 5.23432 5.25696 5.30198 5.34021 5.39339 5.68609 5.79524 6.10280 6.19827 6.63069 6.78533 6.90464 8.58967 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.056972 B = 0.001514 C = 0.001493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.347412 B =18487.625779 C =18752.735252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.260 4.260 3 C 0.033 3.967 4 N -0.337 5.337 5 N -0.378 5.378 6 C 0.128 3.872 7 C -0.119 4.119 8 C -0.105 4.105 9 C -0.111 4.111 10 C 0.059 3.941 11 O -0.355 6.355 12 C 0.490 3.510 13 O -0.518 6.518 14 C -0.092 4.092 15 S -0.161 6.161 16 C -0.534 4.534 17 H 0.064 0.936 18 C 0.048 3.952 19 N -0.915 5.915 20 Si 0.915 3.085 21 H -0.260 1.260 22 H -0.258 1.258 23 H -0.235 1.235 24 C 0.049 3.951 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.196 0.804 29 H 0.088 0.912 30 H 0.126 0.874 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.278 0.722 42 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.667 3.547 17.067 36.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.272 4.272 3 C -0.152 4.152 4 N -0.159 5.159 5 N -0.160 5.160 6 C 0.008 3.992 7 C -0.158 4.158 8 C -0.144 4.144 9 C -0.149 4.149 10 C -0.015 4.015 11 O -0.272 6.272 12 C 0.332 3.668 13 O -0.407 6.407 14 C -0.240 4.240 15 S 0.065 5.935 16 C -0.681 4.681 17 H 0.082 0.918 18 C -0.158 4.158 19 N -0.552 5.552 20 Si 0.736 3.264 21 H -0.185 1.185 22 H -0.182 1.182 23 H -0.158 1.158 24 C -0.097 4.097 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.212 0.788 29 H 0.107 0.893 30 H 0.144 0.856 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.088 0.912 42 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -29.849 2.730 17.956 34.940 hybrid contribution -0.303 0.498 -1.024 1.179 sum -30.152 3.229 16.931 34.731 Atomic orbital electron populations 1.20070 0.87754 1.02906 1.01949 1.20553 0.98424 0.91710 1.16471 1.24241 0.89931 1.01154 0.99917 1.77275 1.22423 0.90495 1.25691 1.48880 1.06487 1.04296 1.56379 1.21997 0.83388 0.93556 1.00250 1.21691 0.95799 1.00450 0.97824 1.21358 0.94527 1.00588 0.97882 1.21527 0.93204 0.99558 1.00604 1.23382 0.90627 1.00635 0.86820 1.86476 1.31137 1.59100 1.50460 1.22814 0.80538 0.78620 0.84792 1.90654 1.74403 1.31550 1.44083 1.22951 0.96443 1.05484 0.99149 1.84607 1.20216 1.49627 1.39045 1.22418 1.09018 1.23900 1.12791 0.91763 1.25558 0.95696 0.98831 0.95684 1.70014 1.15693 1.42895 1.26624 0.85870 0.79284 0.79784 0.81452 1.18496 1.18242 1.15845 1.22965 0.83757 1.01505 1.01486 0.91875 0.91113 0.91430 0.78766 0.89347 0.85564 0.91719 0.92207 0.90342 0.89479 0.90457 0.90935 0.91016 0.90680 0.85698 0.85748 0.91231 0.78003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.37 71.24 0.74 0.21 16 2 C -0.26 -3.43 6.10 -20.14 -0.12 -3.56 16 3 C 0.03 0.54 11.96 85.23 1.02 1.56 16 4 N -0.34 -6.85 12.42 -57.02 -0.71 -7.56 16 5 N -0.38 -5.69 3.68 -348.07 -1.28 -6.97 16 6 C 0.13 1.19 6.51 86.38 0.56 1.75 16 7 C -0.12 -1.34 5.40 30.59 0.17 -1.17 16 8 C -0.11 -1.03 5.21 30.60 0.16 -0.87 16 9 C -0.11 -1.67 5.59 30.59 0.17 -1.50 16 10 C 0.06 1.25 5.47 71.98 0.39 1.64 16 11 O -0.35 -10.09 10.22 -51.41 -0.53 -10.61 16 12 C 0.49 17.17 7.98 71.24 0.57 17.74 16 13 O -0.52 -20.82 15.61 21.96 0.34 -20.48 16 14 C -0.09 -3.50 6.27 71.24 0.45 -3.06 16 15 S -0.16 -7.92 18.55 -56.49 -1.05 -8.97 16 16 C -0.53 -30.60 10.04 67.95 0.68 -29.91 16 17 H 0.06 3.90 8.03 -2.91 -0.02 3.88 16 18 C 0.05 2.78 5.50 84.86 0.47 3.24 16 19 N -0.91 -55.01 13.97 21.65 0.30 -54.71 16 20 Si 0.91 43.74 27.74 68.60 1.90 45.64 16 21 H -0.26 -12.11 7.11 99.48 0.71 -11.40 16 22 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 23 H -0.23 -11.10 6.74 99.48 0.67 -10.43 16 24 C 0.05 0.58 11.36 83.54 0.95 1.52 16 25 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 26 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.07 0.44 8.14 -2.38 -0.02 0.42 16 28 H 0.20 2.18 8.06 -2.91 -0.02 2.15 16 29 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.13 0.39 8.07 -2.38 -0.02 0.37 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 32 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.07 1.51 8.13 -2.39 -0.02 1.49 16 38 H 0.07 1.53 8.13 -2.38 -0.02 1.51 16 39 H 0.12 4.40 8.14 -2.39 -0.02 4.38 16 40 H 0.12 4.41 8.14 -2.40 -0.02 4.39 16 41 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 42 H 0.20 0.83 8.06 -2.91 -0.02 0.81 16 Total: -1.00 -74.09 375.39 6.14 -67.95 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: 0.95 Total: 8.11 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: 6.20 Total: -12.41 kcal Atomic # 7 Polarization: -67.55 SS G_CDS: -1.69 Total: -69.23 kcal Atomic # 8 Polarization: -30.91 SS G_CDS: -0.18 Total: -31.09 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.90 Total: 45.64 kcal Atomic # 16 Polarization: -7.92 SS G_CDS: -1.05 Total: -8.97 kcal Total: -74.09 6.14 -67.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733435928.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.601 kcal (2) G-P(sol) polarization free energy of solvation -74.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds