Wall clock time and date at job start Fri Apr 10 2020 22:42:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38280 * 119.92900 * 2 1 4 4 C 1.38104 * 120.07558 * 179.97438 * 3 2 1 5 5 C 1.38894 * 119.92454 * 359.97438 * 4 3 2 6 6 N 1.39840 * 120.07030 * 179.97438 * 5 4 3 7 7 C 1.46504 * 120.00014 * 173.49618 * 6 5 4 8 8 C 1.50700 * 109.46837 * 277.35798 * 7 6 5 9 9 H 1.07997 * 119.99970 * 0.02562 * 8 7 6 10 10 C 1.37874 * 120.00044 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00046 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00126 * 180.02562 * 10 8 7 13 13 H 1.48492 * 109.47060 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47072 * 120.00266 * 12 10 8 15 15 H 1.48501 * 109.47081 * 239.99901 * 12 10 8 16 16 C 1.34778 * 120.00349 * 353.48839 * 6 5 4 17 17 O 1.21545 * 119.99766 * 5.88512 * 16 6 5 18 18 C 1.47940 * 120.00409 * 185.88208 * 16 6 5 19 19 C 1.39935 * 120.91535 * 330.96867 * 18 16 6 20 20 C 1.38006 * 119.00964 * 179.72809 * 19 18 16 21 21 N 1.31994 * 120.88944 * 0.55484 * 20 19 18 22 22 O 1.41600 * 118.98441 * 179.69291 * 21 20 19 23 23 C 1.31993 * 122.02874 * 359.71478 * 21 20 19 24 24 C 1.38001 * 120.89490 * 0.02562 * 23 21 20 25 25 C 1.38891 * 119.85815 * 0.25462 * 5 4 3 26 26 C 1.38106 * 119.92210 * 359.49158 * 25 5 4 27 27 H 1.08995 * 109.47530 * 90.00512 * 1 2 3 28 28 H 1.09005 * 109.47227 * 210.00314 * 1 2 3 29 29 H 1.08998 * 109.47316 * 330.00000 * 1 2 3 30 30 H 1.08004 * 119.96429 * 359.95209 * 3 2 1 31 31 H 1.08003 * 120.04010 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.47263 * 37.36204 * 7 6 5 33 33 H 1.09002 * 109.47171 * 157.36317 * 7 6 5 34 34 H 0.97006 * 120.00269 * 179.97438 * 11 10 8 35 35 H 1.07998 * 120.49185 * 359.97438 * 19 18 16 36 36 H 1.08001 * 119.55624 * 180.26964 * 20 19 18 37 37 H 1.08009 * 119.55232 * 180.02562 * 23 21 20 38 38 H 1.08001 * 120.50066 * 179.97438 * 24 23 21 39 39 H 1.08000 * 120.03784 * 179.73039 * 25 5 4 40 40 H 1.07999 * 119.96229 * 180.25041 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5779 1.2019 0.0005 5 6 4.2739 -0.0001 0.0016 6 7 5.6723 0.0000 0.0016 7 6 6.4048 -1.2605 0.1465 8 6 6.4984 -1.6221 1.6064 9 1 6.0561 -0.9778 2.3517 10 6 7.1478 -2.7761 1.9905 11 7 7.6860 -3.5610 1.0829 12 14 7.2631 -3.2248 3.8002 13 1 6.5817 -2.1851 4.6123 14 1 6.6079 -4.5380 4.0273 15 1 8.6910 -3.3085 4.1994 16 6 6.3463 1.1595 -0.1318 17 8 5.7433 2.2148 -0.1446 18 6 7.8198 1.1479 -0.2626 19 6 8.5853 0.1312 0.3193 20 6 9.9567 0.1559 0.1679 21 7 10.5468 1.1262 -0.5048 22 8 11.9573 1.1153 -0.6297 23 6 9.8627 2.1066 -1.0644 24 6 8.4871 2.1566 -0.9665 25 6 3.5780 -1.2020 -0.0032 26 6 2.1969 -1.1985 0.0016 27 1 -0.3634 -0.0001 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6551 2.1327 -0.0008 31 1 4.1162 2.1383 0.0001 32 1 5.8792 -2.0500 -0.3906 33 1 7.4080 -1.1471 -0.2647 34 1 8.1432 -4.3728 1.3531 35 1 8.1094 -0.6631 0.8753 36 1 10.5557 -0.6267 0.6097 37 1 10.3867 2.8802 -1.6063 38 1 7.9337 2.9619 -1.4265 39 1 4.1162 -2.1384 -0.0068 40 1 1.6551 -2.1328 0.0019 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000734125067.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:28 Heat of formation + Delta-G solvation = 88.295156 kcal Electronic energy + Delta-G solvation = -25504.186966 eV Core-core repulsion = 21867.604536 eV Total energy + Delta-G solvation = -3636.582430 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.40213 -40.15716 -38.21799 -36.05181 -34.43025 -33.21196 -31.88488 -31.33828 -30.51648 -29.68541 -28.09472 -26.51164 -24.46161 -24.12339 -23.67770 -21.96104 -21.35734 -19.88844 -17.65621 -17.46466 -17.14002 -16.84974 -16.41970 -15.71846 -15.24268 -15.00317 -14.85898 -14.69696 -14.62609 -14.16821 -13.59043 -13.46237 -13.33639 -13.11629 -12.79251 -12.54285 -12.12154 -12.04683 -11.95983 -11.57805 -11.28423 -11.22626 -11.02137 -10.75894 -10.50165 -10.41001 -10.32724 -9.50413 -9.29010 -9.15359 -9.09346 -8.90124 -8.50094 -8.38565 -7.36001 -6.60867 -4.74906 0.40132 0.83996 1.68538 1.85869 2.79859 2.81571 3.01530 3.12483 3.13321 3.20025 3.51595 4.00567 4.27031 4.41860 4.64464 4.68906 4.73322 4.76716 5.15772 5.18479 5.20785 5.44947 5.46680 5.60829 5.65298 5.70705 5.81643 5.88889 5.96335 6.00894 6.09625 6.29440 6.36100 6.50865 6.64676 6.76685 6.83919 6.97626 6.99013 7.05515 7.30195 7.34097 7.47985 7.59586 7.74479 8.26849 8.42458 8.95951 10.42318 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.010814 B = 0.005508 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.685067 B = 5082.746380 C = 7235.548309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.125 4.125 3 C -0.107 4.107 4 C -0.172 4.172 5 C 0.162 3.838 6 N -0.520 5.520 7 C 0.197 3.803 8 C -0.555 4.555 9 H 0.072 0.928 10 C 0.073 3.927 11 N -0.874 5.874 12 Si 0.900 3.100 13 H -0.268 1.268 14 H -0.278 1.278 15 H -0.276 1.276 16 C 0.560 3.440 17 O -0.528 6.528 18 C -0.098 4.098 19 C -0.094 4.094 20 C 0.062 3.938 21 N -0.104 5.104 22 O -0.555 6.555 23 C 0.048 3.952 24 C -0.071 4.071 25 C -0.133 4.133 26 C -0.104 4.104 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.116 0.884 31 H 0.180 0.820 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.275 0.725 35 H 0.234 0.766 36 H 0.186 0.814 37 H 0.182 0.818 38 H 0.167 0.833 39 H 0.137 0.863 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.593 5.264 -2.883 10.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.126 4.126 3 C -0.126 4.126 4 C -0.192 4.192 5 C 0.067 3.933 6 N -0.238 5.238 7 C 0.079 3.921 8 C -0.593 4.593 9 H 0.091 0.909 10 C -0.134 4.134 11 N -0.509 5.509 12 Si 0.726 3.274 13 H -0.192 1.192 14 H -0.203 1.203 15 H -0.202 1.202 16 C 0.350 3.650 17 O -0.408 6.408 18 C -0.109 4.109 19 C -0.111 4.111 20 C -0.083 4.083 21 N 0.218 4.782 22 O -0.611 6.611 23 C -0.098 4.098 24 C -0.091 4.091 25 C -0.153 4.153 26 C -0.123 4.123 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.134 0.866 31 H 0.196 0.804 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.249 0.751 36 H 0.203 0.797 37 H 0.199 0.801 38 H 0.185 0.815 39 H 0.155 0.845 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -8.281 5.587 -2.966 10.420 hybrid contribution 0.320 -0.626 0.935 1.170 sum -7.961 4.961 -2.031 9.597 Atomic orbital electron populations 1.20684 0.91947 1.02083 1.01549 1.19828 0.95564 0.93499 1.03661 1.20911 0.93936 0.96919 1.00847 1.22728 0.94440 1.00102 1.01890 1.17943 0.81919 0.94455 0.99024 1.45750 1.04644 1.09528 1.63857 1.20599 0.93458 0.79501 0.98583 1.21412 1.37982 1.08456 0.91413 0.90945 1.25013 0.94296 0.95199 0.98867 1.69915 1.34031 1.13306 1.33678 0.86368 0.78487 0.78990 0.83562 1.19224 1.20324 1.20169 1.18030 0.86261 0.83524 0.77145 1.90375 1.67422 1.31495 1.51542 1.20445 0.94494 0.96157 0.99760 1.24379 0.91900 0.99056 0.95778 1.22846 0.94276 0.94344 0.96861 1.43347 1.11915 1.07909 1.15016 1.97622 0.77314 1.95417 1.90790 1.22422 0.92017 0.94971 1.00348 1.21799 0.92350 0.98282 0.96630 1.21048 0.94068 0.97493 1.02737 1.20745 0.93408 0.97195 1.00917 0.91939 0.92087 0.92154 0.86615 0.80433 0.93037 0.91570 0.91556 0.75098 0.79704 0.80091 0.81530 0.84505 0.86350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 10.01 36.00 0.36 -0.77 16 2 C -0.12 -1.77 5.88 -104.59 -0.62 -2.39 16 3 C -0.11 -1.62 9.69 -39.61 -0.38 -2.00 16 4 C -0.17 -3.00 9.05 -39.39 -0.36 -3.36 16 5 C 0.16 3.00 6.44 -83.72 -0.54 2.46 16 6 N -0.52 -9.79 2.69 -115.76 -0.31 -10.10 16 7 C 0.20 3.93 4.09 -5.19 -0.02 3.90 16 8 C -0.56 -12.11 7.44 -34.44 -0.26 -12.36 16 9 H 0.07 1.67 7.81 -52.49 -0.41 1.26 16 10 C 0.07 1.63 5.30 -17.82 -0.09 1.54 16 11 N -0.87 -20.24 13.29 55.43 0.74 -19.51 16 12 Si 0.90 18.08 29.54 -169.99 -5.02 13.06 16 13 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 14 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 15 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 16 C 0.56 10.01 7.45 -12.29 -0.09 9.92 16 17 O -0.53 -9.73 13.17 5.33 0.07 -9.65 16 18 C -0.10 -1.56 5.61 -104.65 -0.59 -2.14 16 19 C -0.09 -1.57 7.60 -39.03 -0.30 -1.87 16 20 C 0.06 1.05 10.67 -17.57 -0.19 0.86 16 21 N -0.10 -1.88 3.58 -13.30 -0.05 -1.93 16 22 O -0.56 -13.03 20.04 -11.47 -0.23 -13.26 16 23 C 0.05 0.67 10.67 -17.57 -0.19 0.48 16 24 C -0.07 -0.93 9.69 -39.03 -0.38 -1.31 16 25 C -0.13 -2.34 9.24 -39.39 -0.36 -2.70 16 26 C -0.10 -1.58 9.69 -39.61 -0.38 -1.96 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 29 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 30 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 31 H 0.18 3.22 4.52 -56.29 -0.25 2.96 16 32 H 0.05 1.09 6.36 -51.93 -0.33 0.76 16 33 H 0.07 1.31 4.13 -51.93 -0.21 1.10 16 34 H 0.27 6.11 8.31 -40.82 -0.34 5.77 16 35 H 0.23 4.35 3.05 -52.49 -0.16 4.19 16 36 H 0.19 2.93 8.06 -52.49 -0.42 2.51 16 37 H 0.18 2.02 8.06 -52.48 -0.42 1.59 16 38 H 0.17 1.72 7.98 -52.49 -0.42 1.30 16 39 H 0.14 2.50 6.18 -52.49 -0.32 2.17 16 40 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 337.02 15.07 5.08 5.08 Total: -1.00 -28.92 337.02 -8.31 -37.23 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -4.20 Total: 10.81 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -4.38 Total: -11.71 kcal Atomic # 7 Polarization: -31.92 SS G_CDS: 0.38 Total: -31.54 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.16 Total: -22.92 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.02 Total: 13.06 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.92 -8.31 -37.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734125067.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.523 kcal (2) G-P(sol) polarization free energy of solvation -28.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds