Wall clock time and date at job start Fri Apr 10 2020 22:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38280 * 119.92900 * 2 1 4 4 C 1.38104 * 120.07558 * 179.97438 * 3 2 1 5 5 C 1.38894 * 119.92454 * 359.97438 * 4 3 2 6 6 N 1.39840 * 120.07030 * 179.97438 * 5 4 3 7 7 C 1.46504 * 120.00014 * 173.49618 * 6 5 4 8 8 C 1.50700 * 109.46837 * 277.35798 * 7 6 5 9 9 H 1.07997 * 119.99970 * 0.02562 * 8 7 6 10 10 C 1.37874 * 120.00044 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00046 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00126 * 180.02562 * 10 8 7 13 13 H 1.48492 * 109.47060 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47072 * 120.00266 * 12 10 8 15 15 H 1.48501 * 109.47081 * 239.99901 * 12 10 8 16 16 C 1.34778 * 120.00349 * 353.48839 * 6 5 4 17 17 O 1.21545 * 119.99766 * 5.88512 * 16 6 5 18 18 C 1.47940 * 120.00409 * 185.88208 * 16 6 5 19 19 C 1.39935 * 120.91535 * 330.96867 * 18 16 6 20 20 C 1.38006 * 119.00964 * 179.72809 * 19 18 16 21 21 N 1.31994 * 120.88944 * 0.55484 * 20 19 18 22 22 O 1.41600 * 118.98441 * 179.69291 * 21 20 19 23 23 C 1.31993 * 122.02874 * 359.71478 * 21 20 19 24 24 C 1.38001 * 120.89490 * 0.02562 * 23 21 20 25 25 C 1.38891 * 119.85815 * 0.25462 * 5 4 3 26 26 C 1.38106 * 119.92210 * 359.49158 * 25 5 4 27 27 H 1.08995 * 109.47530 * 90.00512 * 1 2 3 28 28 H 1.09005 * 109.47227 * 210.00314 * 1 2 3 29 29 H 1.08998 * 109.47316 * 330.00000 * 1 2 3 30 30 H 1.08004 * 119.96429 * 359.95209 * 3 2 1 31 31 H 1.08003 * 120.04010 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.47263 * 37.36204 * 7 6 5 33 33 H 1.09002 * 109.47171 * 157.36317 * 7 6 5 34 34 H 0.97006 * 120.00269 * 179.97438 * 11 10 8 35 35 H 1.07998 * 120.49185 * 359.97438 * 19 18 16 36 36 H 1.08001 * 119.55624 * 180.26964 * 20 19 18 37 37 H 1.08009 * 119.55232 * 180.02562 * 23 21 20 38 38 H 1.08001 * 120.50066 * 179.97438 * 24 23 21 39 39 H 1.08000 * 120.03784 * 179.73039 * 25 5 4 40 40 H 1.07999 * 119.96229 * 180.25041 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5779 1.2019 0.0005 5 6 4.2739 -0.0001 0.0016 6 7 5.6723 0.0000 0.0016 7 6 6.4048 -1.2605 0.1465 8 6 6.4984 -1.6221 1.6064 9 1 6.0561 -0.9778 2.3517 10 6 7.1478 -2.7761 1.9905 11 7 7.6860 -3.5610 1.0829 12 14 7.2631 -3.2248 3.8002 13 1 6.5817 -2.1851 4.6123 14 1 6.6079 -4.5380 4.0273 15 1 8.6910 -3.3085 4.1994 16 6 6.3463 1.1595 -0.1318 17 8 5.7433 2.2148 -0.1446 18 6 7.8198 1.1479 -0.2626 19 6 8.5853 0.1312 0.3193 20 6 9.9567 0.1559 0.1679 21 7 10.5468 1.1262 -0.5048 22 8 11.9573 1.1153 -0.6297 23 6 9.8627 2.1066 -1.0644 24 6 8.4871 2.1566 -0.9665 25 6 3.5780 -1.2020 -0.0032 26 6 2.1969 -1.1985 0.0016 27 1 -0.3634 -0.0001 -1.0276 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6551 2.1327 -0.0008 31 1 4.1162 2.1383 0.0001 32 1 5.8792 -2.0500 -0.3906 33 1 7.4080 -1.1471 -0.2647 34 1 8.1432 -4.3728 1.3531 35 1 8.1094 -0.6631 0.8753 36 1 10.5557 -0.6267 0.6097 37 1 10.3867 2.8802 -1.6063 38 1 7.9337 2.9619 -1.4265 39 1 4.1162 -2.1384 -0.0068 40 1 1.6551 -2.1328 0.0019 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000734125067.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:27 Heat of formation + Delta-G solvation = 73.493003 kcal Electronic energy + Delta-G solvation = -25504.828836 eV Core-core repulsion = 21867.604536 eV Total energy + Delta-G solvation = -3637.224300 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.75335 -41.50821 -39.49067 -37.51577 -35.76445 -34.84751 -33.16262 -32.58913 -31.78140 -31.15790 -29.68308 -27.69635 -25.86228 -25.39582 -25.18103 -23.26870 -22.61842 -21.21580 -18.99560 -18.90781 -18.70105 -18.26960 -17.74216 -17.02031 -16.64825 -16.49817 -16.22466 -16.10788 -15.92650 -15.39426 -14.84926 -14.64038 -14.50624 -14.43878 -14.33916 -13.83149 -13.43868 -13.29620 -12.95774 -12.92181 -12.83584 -12.63886 -12.41582 -12.25711 -11.93376 -11.87201 -11.81184 -10.90038 -10.77558 -10.75552 -10.57055 -10.40335 -10.00097 -9.76303 -8.72177 -8.31661 -6.51584 -0.92625 -0.38924 0.41260 0.58939 1.38312 1.43693 1.46571 1.48667 1.54397 1.79181 2.19729 2.34473 2.95255 2.97776 3.02798 3.42549 3.48494 3.60399 3.85142 4.03486 4.13511 4.24495 4.34234 4.45505 4.46812 4.50725 4.62965 4.73012 4.82065 4.89562 4.94333 4.97028 5.08251 5.21116 5.26328 5.43160 5.56366 5.59203 5.69773 5.71287 5.80138 5.82789 5.83964 6.28726 6.30084 6.62683 6.90025 7.21239 8.68906 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.010814 B = 0.005508 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.685067 B = 5082.746380 C = 7235.548309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.118 4.118 3 C -0.108 4.108 4 C -0.185 4.185 5 C 0.131 3.869 6 N -0.525 5.525 7 C 0.209 3.791 8 C -0.552 4.552 9 H 0.056 0.944 10 C 0.044 3.956 11 N -0.897 5.897 12 Si 0.946 3.054 13 H -0.274 1.274 14 H -0.279 1.279 15 H -0.273 1.273 16 C 0.556 3.444 17 O -0.533 6.533 18 C -0.097 4.097 19 C -0.099 4.099 20 C 0.064 3.936 21 N -0.124 5.124 22 O -0.612 6.612 23 C 0.070 3.930 24 C -0.047 4.047 25 C -0.151 4.151 26 C -0.107 4.107 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.144 0.856 31 H 0.172 0.828 32 H 0.035 0.965 33 H 0.071 0.929 34 H 0.276 0.724 35 H 0.215 0.785 36 H 0.186 0.814 37 H 0.217 0.783 38 H 0.206 0.794 39 H 0.120 0.880 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.670 6.776 -3.278 13.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.119 4.119 3 C -0.126 4.126 4 C -0.204 4.204 5 C 0.037 3.963 6 N -0.243 5.243 7 C 0.090 3.910 8 C -0.590 4.590 9 H 0.074 0.926 10 C -0.160 4.160 11 N -0.534 5.534 12 Si 0.771 3.229 13 H -0.198 1.198 14 H -0.205 1.205 15 H -0.198 1.198 16 C 0.347 3.653 17 O -0.414 6.414 18 C -0.108 4.108 19 C -0.117 4.117 20 C -0.080 4.080 21 N 0.197 4.803 22 O -0.666 6.666 23 C -0.075 4.075 24 C -0.065 4.065 25 C -0.171 4.171 26 C -0.125 4.125 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.161 0.839 31 H 0.188 0.812 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.231 0.769 36 H 0.203 0.797 37 H 0.234 0.766 38 H 0.223 0.777 39 H 0.137 0.863 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.347 7.097 -3.357 12.988 hybrid contribution 0.731 -1.017 1.024 1.618 sum -9.616 6.080 -2.333 11.614 Atomic orbital electron populations 1.20754 0.88884 1.03449 1.02960 1.20267 0.97730 0.92602 1.01309 1.21258 0.93121 0.98585 0.99661 1.22746 0.95638 0.99233 1.02794 1.18226 0.81853 0.95357 1.00863 1.45721 1.05078 1.09305 1.64246 1.20332 0.93491 0.79831 0.97301 1.21390 1.37420 1.08137 0.92004 0.92554 1.25458 0.94202 0.95228 1.01155 1.69963 1.34944 1.13719 1.34740 0.85671 0.78343 0.78257 0.80603 1.19815 1.20455 1.19815 1.18244 0.86883 0.83210 0.76958 1.90374 1.67752 1.31366 1.51921 1.20526 0.93602 0.96697 0.99950 1.23987 0.91720 0.99254 0.96734 1.22795 0.94154 0.94447 0.96636 1.43400 1.10743 1.09418 1.16784 1.97595 0.80082 1.96327 1.92616 1.23106 0.92284 0.94016 0.98126 1.22166 0.91744 0.97809 0.94830 1.21059 0.95296 0.96583 1.04157 1.21066 0.92522 0.98897 1.00015 0.90348 0.90941 0.90671 0.83863 0.81151 0.94724 0.91167 0.91490 0.76912 0.79714 0.76625 0.77701 0.86256 0.84116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.81 10.01 71.24 0.71 -1.10 16 2 C -0.12 -3.06 5.88 -19.84 -0.12 -3.18 16 3 C -0.11 -3.01 9.69 22.25 0.22 -2.79 16 4 C -0.18 -6.31 9.05 22.40 0.20 -6.10 16 5 C 0.13 4.92 6.44 38.18 0.25 5.16 16 6 N -0.53 -20.12 2.69 -638.42 -1.72 -21.84 16 7 C 0.21 8.65 4.09 85.63 0.35 9.00 16 8 C -0.55 -24.80 7.44 25.60 0.19 -24.61 16 9 H 0.06 2.68 7.81 -2.91 -0.02 2.66 16 10 C 0.04 2.00 5.30 84.65 0.45 2.45 16 11 N -0.90 -42.52 13.29 21.45 0.28 -42.23 16 12 Si 0.95 37.56 29.54 68.60 2.03 39.59 16 13 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 14 H -0.28 -11.08 7.11 99.48 0.71 -10.38 16 15 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 16 C 0.56 19.62 7.45 86.81 0.65 20.26 16 17 O -0.53 -19.03 13.17 -3.86 -0.05 -19.08 16 18 C -0.10 -2.98 5.61 -19.88 -0.11 -3.10 16 19 C -0.10 -3.35 7.60 22.63 0.17 -3.18 16 20 C 0.06 2.20 10.67 84.61 0.90 3.10 16 21 N -0.12 -4.39 3.58 -195.98 -0.70 -5.09 16 22 O -0.61 -29.05 20.04 -38.78 -0.78 -29.83 16 23 C 0.07 1.80 10.67 84.61 0.90 2.70 16 24 C -0.05 -1.08 9.69 22.62 0.22 -0.86 16 25 C -0.15 -5.36 9.24 22.40 0.21 -5.16 16 26 C -0.11 -3.10 9.69 22.25 0.22 -2.88 16 27 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.07 1.13 8.08 -2.38 -0.02 1.11 16 29 H 0.07 1.12 8.08 -2.39 -0.02 1.10 16 30 H 0.14 3.14 8.06 -2.91 -0.02 3.11 16 31 H 0.17 6.05 4.52 -63.17 -0.29 5.76 16 32 H 0.03 1.54 6.36 -2.39 -0.02 1.53 16 33 H 0.07 2.87 4.13 -2.39 -0.01 2.86 16 34 H 0.28 12.50 8.31 -92.70 -0.77 11.73 16 35 H 0.22 8.27 3.05 -2.91 -0.01 8.26 16 36 H 0.19 6.13 8.06 -2.91 -0.02 6.11 16 37 H 0.22 3.97 8.06 -2.91 -0.02 3.95 16 38 H 0.21 3.28 7.98 -2.91 -0.02 3.25 16 39 H 0.12 4.58 6.18 -2.91 -0.02 4.56 16 40 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -64.19 337.02 5.28 -58.91 By element: Atomic # 1 Polarization: 29.04 SS G_CDS: 0.82 Total: 29.86 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: 5.40 Total: -10.28 kcal Atomic # 7 Polarization: -67.03 SS G_CDS: -2.14 Total: -69.17 kcal Atomic # 8 Polarization: -48.08 SS G_CDS: -0.83 Total: -48.90 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 2.03 Total: 39.59 kcal Total: -64.19 5.28 -58.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000734125067.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.400 kcal (2) G-P(sol) polarization free energy of solvation -64.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds