Wall clock time and date at job start Fri Apr 10 2020 22:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99517 * 2 1 4 4 H 1.48494 * 109.47262 * 269.99789 * 3 2 1 5 5 H 1.48498 * 109.46978 * 30.00437 * 3 2 1 6 6 H 1.48503 * 109.46868 * 149.99994 * 3 2 1 7 7 C 1.37878 * 120.00333 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99475 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99949 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47013 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47024 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.46984 * 179.97438 * 11 10 9 13 13 C 1.34775 * 119.99839 * 180.02562 * 12 11 10 14 14 O 1.21587 * 120.00275 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00044 * 180.02562 * 13 12 11 16 16 C 1.46500 * 120.00075 * 179.97438 * 15 13 12 17 17 H 1.09002 * 109.47092 * 324.99806 * 16 15 13 18 18 C 1.53000 * 109.47023 * 204.99547 * 16 15 13 19 19 C 1.53006 * 109.46846 * 65.00406 * 18 16 15 20 20 O 1.42903 * 109.46858 * 179.97438 * 19 18 16 21 21 C 1.50703 * 109.47155 * 84.99845 * 16 15 13 22 22 C 1.33384 * 125.20535 * 220.00139 * 21 16 15 23 23 C 1.38421 * 114.92360 * 179.97438 * 22 21 16 24 24 C 1.33388 * 114.92162 * 359.97438 * 23 22 21 25 25 S 1.75880 * 125.20166 * 39.69540 * 21 16 15 26 26 H 0.97003 * 120.00508 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47457 * 60.00073 * 9 7 2 28 28 H 1.09005 * 109.47194 * 299.99976 * 9 7 2 29 29 H 1.08997 * 109.46860 * 60.00134 * 10 9 7 30 30 H 1.08996 * 109.46840 * 299.99731 * 10 9 7 31 31 H 1.08998 * 109.47285 * 59.99956 * 11 10 9 32 32 H 1.09002 * 109.47486 * 300.00363 * 11 10 9 33 33 H 0.96997 * 119.99856 * 0.02562 * 12 11 10 34 34 H 0.96997 * 119.99651 * 359.97438 * 15 13 12 35 35 H 1.09002 * 109.47069 * 184.99840 * 18 16 15 36 36 H 1.08991 * 109.47625 * 305.00159 * 18 16 15 37 37 H 1.09002 * 109.46824 * 299.99583 * 19 18 16 38 38 H 1.09001 * 109.47241 * 59.99481 * 19 18 16 39 39 H 0.96697 * 113.99356 * 179.97438 * 20 19 18 40 40 H 1.08005 * 122.53528 * 359.97438 * 22 21 16 41 41 H 1.08004 * 122.54303 * 180.02562 * 23 22 21 42 42 H 1.07994 * 125.20326 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4806 -4.9871 0.0001 12 7 2.4327 -6.1005 -0.0005 13 6 1.9835 -7.3712 -0.0006 14 8 0.7881 -7.5935 0.0003 15 7 2.8593 -8.3956 -0.0007 16 6 2.3711 -9.7768 -0.0002 17 1 1.4565 -9.8387 0.5896 18 6 3.4339 -10.6932 0.6092 19 6 3.6329 -10.3338 2.0831 20 8 4.6252 -11.1901 2.6524 21 6 2.0864 -10.2095 -1.4155 22 6 1.0438 -10.9478 -1.7989 23 6 0.9897 -11.2210 -3.1548 24 6 1.9881 -10.7041 -3.8726 25 16 3.0741 -9.8117 -2.8153 26 1 -0.4851 0.8400 0.0004 27 1 0.6241 -2.5568 -0.8903 28 1 0.6248 -2.5571 0.8897 29 1 2.8721 -3.6042 0.8895 30 1 2.8721 -3.6042 -0.8905 31 1 0.8536 -5.0451 -0.8896 32 1 0.8541 -5.0446 0.8903 33 1 3.3863 -5.9232 -0.0008 34 1 3.8129 -8.2182 -0.0010 35 1 3.1086 -11.7305 0.5289 36 1 4.3746 -10.5650 0.0738 37 1 3.9582 -9.2965 2.1633 38 1 2.6921 -10.4620 2.6185 39 1 4.8035 -11.0183 3.5871 40 1 0.2983 -11.3053 -1.1040 41 1 0.1985 -11.8075 -3.5981 42 1 2.1093 -10.8141 -4.9401 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741087135.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:30 Heat of formation + Delta-G solvation = -65.594742 kcal Electronic energy + Delta-G solvation = -22835.082229 eV Core-core repulsion = 19327.270583 eV Total energy + Delta-G solvation = -3507.811646 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.12946 -38.25615 -37.38028 -35.88157 -35.04351 -33.34712 -31.99112 -30.71610 -29.71713 -26.79178 -25.61510 -23.44961 -23.06245 -21.62689 -20.93399 -20.46736 -19.49401 -18.25011 -17.85579 -17.43320 -16.40967 -16.10892 -15.76379 -15.41333 -15.19155 -14.55508 -14.49551 -14.28094 -14.01086 -13.93977 -13.32348 -12.99690 -12.81373 -12.40898 -12.31168 -12.27403 -11.82879 -11.80842 -11.73526 -11.47007 -10.92059 -10.89058 -10.72566 -10.59497 -10.36649 -10.12781 -9.86195 -9.45888 -9.40504 -9.12812 -8.85195 -8.66391 -8.57208 -8.37336 -6.01910 -4.05047 0.82060 1.46755 1.86286 2.53674 2.80466 3.30527 3.31753 3.36911 3.39576 3.71413 4.31946 4.44929 4.49210 4.60302 4.75802 4.89200 4.96320 5.16440 5.19018 5.33857 5.33992 5.40964 5.55368 5.66255 5.71803 5.81213 5.91271 6.11682 6.17573 6.23445 6.39454 6.51670 6.62181 6.77481 7.01608 7.02590 7.22377 7.63739 7.76602 7.96978 8.09937 8.37860 8.71539 9.01686 9.59120 11.09381 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.015798 B = 0.002541 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.917536 B =11017.961498 C =12057.467688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.740 5.740 13 C 0.702 3.298 14 O -0.586 6.586 15 N -0.749 5.749 16 C 0.241 3.759 17 H 0.108 0.892 18 C -0.122 4.122 19 C 0.076 3.924 20 O -0.576 6.576 21 C -0.183 4.183 22 C -0.128 4.128 23 C -0.133 4.133 24 C -0.218 4.218 25 S 0.109 5.891 26 H 0.261 0.739 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.394 0.606 34 H 0.395 0.605 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.382 0.618 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.563 -25.873 -0.808 27.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.158 4.158 11 C 0.012 3.988 12 N -0.394 5.394 13 C 0.402 3.598 14 O -0.463 6.463 15 N -0.405 5.405 16 C 0.132 3.868 17 H 0.126 0.874 18 C -0.161 4.161 19 C -0.002 4.002 20 O -0.382 6.382 21 C -0.302 4.302 22 C -0.159 4.159 23 C -0.164 4.164 24 C -0.354 4.354 25 S 0.373 5.627 26 H 0.071 0.929 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.227 0.773 34 H 0.230 0.770 35 H 0.109 0.891 36 H 0.097 0.903 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.229 0.771 40 H 0.157 0.843 41 H 0.157 0.843 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 8.594 -25.331 -1.642 26.799 hybrid contribution -0.098 0.631 0.553 0.844 sum 8.496 -24.700 -1.090 26.143 Atomic orbital electron populations 1.69964 1.06058 1.26688 1.50558 1.25029 0.94851 0.99291 0.95290 0.86586 0.79794 0.83461 0.78100 1.20657 1.21203 1.19906 1.21203 0.92978 0.90952 1.50929 0.92665 1.19024 0.93845 0.90800 0.97676 1.21888 0.99786 0.93325 1.00813 1.21514 0.91263 0.84106 1.01882 1.45387 1.10476 1.04391 1.79148 1.15989 0.85288 0.80738 0.77768 1.90930 1.13968 1.83978 1.57408 1.45299 1.09061 1.04655 1.81522 1.19012 0.98420 0.79706 0.89617 0.87383 1.21807 0.99236 1.00443 0.94572 1.22145 0.91149 0.93262 0.93621 1.86438 1.60757 1.61069 1.29893 1.24968 1.00695 1.05556 0.98933 1.20080 0.98504 1.01183 0.96139 1.20153 0.99865 1.02911 0.93466 1.25633 1.00562 1.05697 1.03481 1.84182 1.28031 1.52521 0.98007 0.92920 0.96255 0.96265 0.92790 0.92761 0.91964 0.91946 0.77328 0.77036 0.89148 0.90324 0.93124 0.93221 0.77092 0.84257 0.84345 0.82036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.84 13.29 55.43 0.74 -26.11 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 8 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.48 16 10 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 11 C 0.14 2.40 5.67 -4.04 -0.02 2.37 16 12 N -0.74 -10.50 5.56 -65.23 -0.36 -10.86 16 13 C 0.70 10.35 8.52 -86.92 -0.74 9.61 16 14 O -0.59 -11.17 16.01 5.29 0.08 -11.08 16 15 N -0.75 -7.76 4.29 -59.81 -0.26 -8.01 16 16 C 0.24 2.34 2.40 -69.08 -0.17 2.18 16 17 H 0.11 1.19 7.56 -51.93 -0.39 0.80 16 18 C -0.12 -0.93 5.11 -26.73 -0.14 -1.07 16 19 C 0.08 0.55 6.93 37.16 0.26 0.81 16 20 O -0.58 -4.42 13.66 -35.23 -0.48 -4.90 16 21 C -0.18 -1.95 5.42 -36.00 -0.19 -2.15 16 22 C -0.13 -1.34 10.04 -41.21 -0.41 -1.76 16 23 C -0.13 -1.29 10.18 -41.21 -0.42 -1.71 16 24 C -0.22 -2.09 11.23 29.04 0.33 -1.76 16 25 S 0.11 1.11 23.06 -107.50 -2.48 -1.37 16 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.39 4.42 8.49 -40.82 -0.35 4.08 16 34 H 0.40 3.10 8.62 -40.82 -0.35 2.75 16 35 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.05 0.35 7.75 -51.93 -0.40 -0.05 16 38 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.38 1.35 9.12 45.56 0.42 1.77 16 40 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 41 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 42 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 372.06 15.07 5.61 5.61 Total: -1.00 -34.81 372.06 -10.07 -44.87 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -5.69 Total: 4.26 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: -2.20 Total: -8.84 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: 0.12 Total: -44.98 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.40 Total: -15.98 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -2.48 Total: -1.37 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.81 -10.07 -44.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741087135.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.722 kcal (2) G-P(sol) polarization free energy of solvation -34.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds