Wall clock time and date at job start Fri Apr 10 2020 22:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 119.99517 * 2 1 4 4 H 1.48494 * 109.47262 * 269.99789 * 3 2 1 5 5 H 1.48498 * 109.46978 * 30.00437 * 3 2 1 6 6 H 1.48503 * 109.46868 * 149.99994 * 3 2 1 7 7 C 1.37878 * 120.00333 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99475 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99949 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47013 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47024 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.46984 * 179.97438 * 11 10 9 13 13 C 1.34775 * 119.99839 * 180.02562 * 12 11 10 14 14 O 1.21587 * 120.00275 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00044 * 180.02562 * 13 12 11 16 16 C 1.46500 * 120.00075 * 179.97438 * 15 13 12 17 17 H 1.09002 * 109.47092 * 324.99806 * 16 15 13 18 18 C 1.53000 * 109.47023 * 204.99547 * 16 15 13 19 19 C 1.53006 * 109.46846 * 65.00406 * 18 16 15 20 20 O 1.42903 * 109.46858 * 179.97438 * 19 18 16 21 21 C 1.50703 * 109.47155 * 84.99845 * 16 15 13 22 22 C 1.33384 * 125.20535 * 220.00139 * 21 16 15 23 23 C 1.38421 * 114.92360 * 179.97438 * 22 21 16 24 24 C 1.33388 * 114.92162 * 359.97438 * 23 22 21 25 25 S 1.75880 * 125.20166 * 39.69540 * 21 16 15 26 26 H 0.97003 * 120.00508 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.47457 * 60.00073 * 9 7 2 28 28 H 1.09005 * 109.47194 * 299.99976 * 9 7 2 29 29 H 1.08997 * 109.46860 * 60.00134 * 10 9 7 30 30 H 1.08996 * 109.46840 * 299.99731 * 10 9 7 31 31 H 1.08998 * 109.47285 * 59.99956 * 11 10 9 32 32 H 1.09002 * 109.47486 * 300.00363 * 11 10 9 33 33 H 0.96997 * 119.99856 * 0.02562 * 12 11 10 34 34 H 0.96997 * 119.99651 * 359.97438 * 15 13 12 35 35 H 1.09002 * 109.47069 * 184.99840 * 18 16 15 36 36 H 1.08991 * 109.47625 * 305.00159 * 18 16 15 37 37 H 1.09002 * 109.46824 * 299.99583 * 19 18 16 38 38 H 1.09001 * 109.47241 * 59.99481 * 19 18 16 39 39 H 0.96697 * 113.99356 * 179.97438 * 20 19 18 40 40 H 1.08005 * 122.53528 * 359.97438 * 22 21 16 41 41 H 1.08004 * 122.54303 * 180.02562 * 23 22 21 42 42 H 1.07994 * 125.20326 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4806 -4.9871 0.0001 12 7 2.4327 -6.1005 -0.0005 13 6 1.9835 -7.3712 -0.0006 14 8 0.7881 -7.5935 0.0003 15 7 2.8593 -8.3956 -0.0007 16 6 2.3711 -9.7768 -0.0002 17 1 1.4565 -9.8387 0.5896 18 6 3.4339 -10.6932 0.6092 19 6 3.6329 -10.3338 2.0831 20 8 4.6252 -11.1901 2.6524 21 6 2.0864 -10.2095 -1.4155 22 6 1.0438 -10.9478 -1.7989 23 6 0.9897 -11.2210 -3.1548 24 6 1.9881 -10.7041 -3.8726 25 16 3.0741 -9.8117 -2.8153 26 1 -0.4851 0.8400 0.0004 27 1 0.6241 -2.5568 -0.8903 28 1 0.6248 -2.5571 0.8897 29 1 2.8721 -3.6042 0.8895 30 1 2.8721 -3.6042 -0.8905 31 1 0.8536 -5.0451 -0.8896 32 1 0.8541 -5.0446 0.8903 33 1 3.3863 -5.9232 -0.0008 34 1 3.8129 -8.2182 -0.0010 35 1 3.1086 -11.7305 0.5289 36 1 4.3746 -10.5650 0.0738 37 1 3.9582 -9.2965 2.1633 38 1 2.6921 -10.4620 2.6185 39 1 4.8035 -11.0183 3.5871 40 1 0.2983 -11.3053 -1.1040 41 1 0.1985 -11.8075 -3.5981 42 1 2.1093 -10.8141 -4.9401 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741087135.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:30 Heat of formation + Delta-G solvation = -91.206713 kcal Electronic energy + Delta-G solvation = -22836.192847 eV Core-core repulsion = 19327.270583 eV Total energy + Delta-G solvation = -3508.922264 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.23956 -39.10750 -38.01752 -37.08486 -36.23260 -35.18272 -33.37673 -32.07588 -30.43265 -28.51141 -26.52523 -24.93208 -24.03764 -22.45108 -22.29711 -21.92588 -20.29368 -19.33349 -18.63995 -18.51483 -18.11604 -17.06854 -16.76469 -16.51303 -16.43626 -16.11275 -15.55267 -15.31779 -15.21475 -15.00820 -14.27387 -14.11123 -13.82807 -13.72921 -13.58630 -13.44426 -13.10145 -12.99671 -12.74584 -12.54976 -12.52695 -12.35853 -12.09650 -11.69778 -11.65848 -11.62965 -11.30353 -11.14386 -10.91287 -10.54680 -10.49721 -9.90800 -9.59833 -9.35481 -8.18740 -6.30188 0.04862 0.69857 1.09391 1.42168 1.43523 1.54310 1.62155 1.88570 2.13449 2.42514 3.12830 3.15103 3.29277 3.77744 3.98123 4.11837 4.17858 4.23153 4.24868 4.32327 4.47839 4.57579 4.59519 4.63154 4.69262 4.90886 4.97331 5.00534 5.07198 5.14657 5.18418 5.35920 5.39926 5.47514 5.55119 5.59486 5.72449 5.85361 5.95443 6.23548 6.86697 6.87289 7.07201 7.39422 7.56572 8.93434 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.015798 B = 0.002541 C = 0.002322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.917536 B =11017.961498 C =12057.467688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.024 3.976 10 C -0.100 4.100 11 C 0.151 3.849 12 N -0.729 5.729 13 C 0.703 3.297 14 O -0.631 6.631 15 N -0.728 5.728 16 C 0.244 3.756 17 H 0.094 0.906 18 C -0.111 4.111 19 C 0.077 3.923 20 O -0.591 6.591 21 C -0.199 4.199 22 C -0.141 4.141 23 C -0.143 4.143 24 C -0.222 4.222 25 S 0.102 5.898 26 H 0.263 0.737 27 H -0.009 1.009 28 H -0.007 1.007 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.043 0.957 32 H 0.048 0.952 33 H 0.412 0.588 34 H 0.411 0.589 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.055 0.945 38 H 0.050 0.950 39 H 0.399 0.601 40 H 0.147 0.853 41 H 0.158 0.842 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.817 -26.289 -0.927 28.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.184 1.184 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.014 4.014 10 C -0.138 4.138 11 C 0.027 3.973 12 N -0.385 5.385 13 C 0.403 3.597 14 O -0.511 6.511 15 N -0.385 5.385 16 C 0.136 3.864 17 H 0.112 0.888 18 C -0.150 4.150 19 C 0.000 4.000 20 O -0.399 6.399 21 C -0.317 4.317 22 C -0.172 4.172 23 C -0.174 4.174 24 C -0.357 4.357 25 S 0.365 5.635 26 H 0.072 0.928 27 H 0.009 0.991 28 H 0.011 0.989 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.248 0.752 34 H 0.248 0.752 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.249 0.751 40 H 0.164 0.836 41 H 0.176 0.824 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 10.931 -25.779 -1.748 28.056 hybrid contribution -0.828 0.681 0.582 1.220 sum 10.103 -25.098 -1.166 27.081 Atomic orbital electron populations 1.70111 1.07958 1.27782 1.51735 1.26023 0.95732 1.03550 0.94814 0.85422 0.78718 0.78317 0.78431 1.19883 1.21066 1.18355 1.21686 0.93759 0.92000 1.50381 0.91500 1.18936 0.94443 0.92952 0.95044 1.21583 0.98415 0.91682 1.02114 1.21054 0.91296 0.84596 1.00391 1.45024 1.10843 1.03532 1.79065 1.16086 0.85035 0.81252 0.77355 1.90907 1.16198 1.84644 1.59381 1.45087 1.09330 1.04068 1.80010 1.19035 0.98627 0.79328 0.89377 0.88828 1.21698 0.98557 0.99862 0.94861 1.22109 0.91252 0.93417 0.93260 1.86389 1.60708 1.61304 1.31548 1.25110 1.01172 1.06081 0.99377 1.20362 0.98650 1.01274 0.96917 1.20421 1.00535 1.03193 0.93220 1.25970 1.00124 1.05112 1.04504 1.84117 1.28330 1.52931 0.98128 0.92825 0.99085 0.98906 0.91237 0.91468 0.93820 0.93352 0.75216 0.75175 0.88911 0.89812 0.92697 0.93177 0.75105 0.83583 0.82426 0.79968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.24 13.29 21.45 0.28 -56.95 16 2 C 0.00 -0.21 5.46 84.66 0.46 0.26 16 3 Si 0.97 43.67 29.54 68.60 2.03 45.70 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 7 C -0.54 -30.05 9.11 25.60 0.23 -29.82 16 8 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 9 C 0.02 1.25 4.97 29.85 0.15 1.39 16 10 C -0.10 -3.81 5.27 30.60 0.16 -3.65 16 11 C 0.15 5.36 5.67 86.38 0.49 5.85 16 12 N -0.73 -19.82 5.56 -478.54 -2.66 -22.48 16 13 C 0.70 20.23 8.52 179.06 1.53 21.75 16 14 O -0.63 -24.29 16.01 -3.99 -0.06 -24.35 16 15 N -0.73 -14.17 4.29 -461.41 -1.98 -16.15 16 16 C 0.24 4.56 2.40 44.25 0.11 4.67 16 17 H 0.09 2.07 7.56 -2.39 -0.02 2.05 16 18 C -0.11 -1.55 5.11 30.60 0.16 -1.39 16 19 C 0.08 1.01 6.93 71.98 0.50 1.51 16 20 O -0.59 -8.00 13.66 -148.98 -2.04 -10.04 16 21 C -0.20 -4.11 5.42 24.59 0.13 -3.98 16 22 C -0.14 -2.88 10.04 21.21 0.21 -2.66 16 23 C -0.14 -2.62 10.18 21.22 0.22 -2.40 16 24 C -0.22 -3.94 11.23 66.72 0.75 -3.19 16 25 S 0.10 1.95 23.06 -56.49 -1.30 0.65 16 26 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 27 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 28 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 29 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.41 8.26 8.49 -92.71 -0.79 7.47 16 34 H 0.41 5.55 8.62 -92.71 -0.80 4.75 16 35 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.05 0.66 7.75 -2.39 -0.02 0.64 16 38 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.40 2.10 9.12 -74.06 -0.68 1.43 16 40 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 41 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 42 H 0.18 2.33 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -75.48 372.06 -1.85 -77.33 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -1.22 Total: 17.95 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: 5.09 Total: -11.66 kcal Atomic # 7 Polarization: -91.22 SS G_CDS: -4.36 Total: -95.58 kcal Atomic # 8 Polarization: -32.29 SS G_CDS: -2.10 Total: -34.39 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -1.30 Total: 0.65 kcal Total: -75.48 -1.85 -77.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741087135.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.876 kcal (2) G-P(sol) polarization free energy of solvation -75.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds