Wall clock time and date at job start Fri Apr 10 2020 22:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 120.00065 * 2 1 4 4 H 1.48498 * 109.47267 * 239.99882 * 3 2 1 5 5 H 1.48504 * 109.47216 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47138 * 119.99867 * 3 2 1 7 7 C 1.37880 * 119.99724 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99631 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00080 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46808 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47182 * 179.97438 * 10 9 7 12 12 N 1.46493 * 109.47084 * 179.97438 * 11 10 9 13 13 C 1.34784 * 119.99864 * 180.02562 * 12 11 10 14 14 O 1.21588 * 119.99858 * 359.72927 * 13 12 11 15 15 N 1.34777 * 119.99964 * 179.73002 * 13 12 11 16 16 C 1.46496 * 119.99614 * 180.02562 * 15 13 12 17 17 H 1.09001 * 109.47676 * 324.99283 * 16 15 13 18 18 C 1.52998 * 109.47575 * 84.99689 * 16 15 13 19 19 C 1.53003 * 109.47104 * 295.00182 * 18 16 15 20 20 O 1.42894 * 109.47314 * 180.02562 * 19 18 16 21 21 C 1.50706 * 109.46843 * 204.99675 * 16 15 13 22 22 C 1.33385 * 125.20216 * 139.71837 * 21 16 15 23 23 C 1.38428 * 114.92040 * 179.85819 * 22 21 16 24 24 C 1.33389 * 114.92045 * 0.43006 * 23 22 21 25 25 S 1.75880 * 125.20158 * 320.02195 * 21 16 15 26 26 H 0.96993 * 120.00031 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.47275 * 60.00022 * 9 7 2 28 28 H 1.09001 * 109.47061 * 299.99581 * 9 7 2 29 29 H 1.09007 * 109.47291 * 60.00087 * 10 9 7 30 30 H 1.08993 * 109.47243 * 299.99996 * 10 9 7 31 31 H 1.09007 * 109.46593 * 60.00081 * 11 10 9 32 32 H 1.09006 * 109.47216 * 300.00539 * 11 10 9 33 33 H 0.97000 * 120.00740 * 359.72857 * 12 11 10 34 34 H 0.96996 * 119.99887 * 359.97438 * 15 13 12 35 35 H 1.09007 * 109.47109 * 54.99272 * 18 16 15 36 36 H 1.08997 * 109.47748 * 174.99358 * 18 16 15 37 37 H 1.09007 * 109.46395 * 299.99527 * 19 18 16 38 38 H 1.08996 * 109.47009 * 59.99233 * 19 18 16 39 39 H 0.96694 * 114.00201 * 179.97438 * 20 19 18 40 40 H 1.07998 * 122.54317 * 0.02562 * 22 21 16 41 41 H 1.07995 * 122.53936 * 180.20368 * 23 22 21 42 42 H 1.08000 * 125.20730 * 179.74461 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9872 0.0012 12 7 2.4323 -6.1006 0.0006 13 6 1.9830 -7.3714 0.0005 14 8 0.7876 -7.5935 0.0058 15 7 2.8589 -8.3958 -0.0056 16 6 2.3705 -9.7769 -0.0063 17 1 1.4584 -9.8402 0.5872 18 6 2.0754 -10.2129 -1.4429 19 6 0.9237 -9.3760 -2.0034 20 8 0.6476 -9.7836 -3.3449 21 6 3.4198 -10.6810 0.5875 22 6 3.1787 -11.6995 1.4144 23 6 4.3029 -12.3922 1.8299 24 6 5.4577 -11.9307 1.3475 25 16 5.1504 -10.5499 0.3022 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8903 29 1 2.8720 -3.6044 0.8906 30 1 2.8719 -3.6044 -0.8894 31 1 0.8534 -5.0451 -0.8887 32 1 0.8538 -5.0446 0.8914 33 1 3.3860 -5.9234 -0.0041 34 1 3.8125 -8.2185 -0.0103 35 1 2.9638 -10.0657 -2.0570 36 1 1.7973 -11.2668 -1.4530 37 1 0.0352 -9.5233 -1.3892 38 1 1.2018 -8.3222 -1.9933 39 1 -0.0735 -9.2945 -3.7641 40 1 2.1817 -11.9653 1.7334 41 1 4.2493 -13.2397 2.4971 42 1 6.4323 -12.3416 1.5658 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000741087136.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:32 Heat of formation + Delta-G solvation = -63.268391 kcal Electronic energy + Delta-G solvation = -22922.543961 eV Core-core repulsion = 19414.833194 eV Total energy + Delta-G solvation = -3507.710768 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.30940 -38.38364 -37.08117 -35.84301 -35.02789 -33.38847 -31.98412 -30.67050 -29.78214 -26.82586 -25.68348 -23.49032 -23.05708 -21.54465 -20.97448 -20.55073 -19.54234 -18.43411 -17.55832 -17.39074 -16.42650 -16.19532 -15.80744 -15.48543 -15.00742 -14.51644 -14.36454 -14.17922 -14.07168 -13.93857 -13.50183 -13.07702 -12.85428 -12.61034 -12.37966 -12.28556 -11.87567 -11.81867 -11.67852 -11.20017 -11.01216 -10.89132 -10.74065 -10.62859 -10.17664 -9.93536 -9.86168 -9.46705 -9.36835 -9.15357 -9.06964 -8.84597 -8.68409 -8.37797 -6.02647 -4.05810 0.57207 1.19600 1.59652 2.32005 2.75255 3.25242 3.31410 3.36260 3.38137 3.91298 4.27681 4.43862 4.46500 4.69887 4.87196 4.94060 5.15256 5.16965 5.25916 5.33070 5.41460 5.59863 5.66344 5.70530 5.78332 5.86563 5.89661 5.96502 6.04129 6.15480 6.32713 6.48178 6.59793 6.74214 6.98253 7.00256 7.58087 7.62252 7.75091 7.96004 8.04118 8.36882 8.64056 9.00634 9.58329 11.08620 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.018467 B = 0.002416 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.819540 B =11584.451253 C =12545.314275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.121 4.121 11 C 0.135 3.865 12 N -0.740 5.740 13 C 0.703 3.297 14 O -0.588 6.588 15 N -0.748 5.748 16 C 0.241 3.759 17 H 0.109 0.891 18 C -0.125 4.125 19 C 0.081 3.919 20 O -0.584 6.584 21 C -0.186 4.186 22 C -0.124 4.124 23 C -0.133 4.133 24 C -0.211 4.211 25 S 0.107 5.893 26 H 0.262 0.738 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.394 0.606 34 H 0.394 0.606 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.381 0.619 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.501 -26.210 0.704 27.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.159 4.159 11 C 0.012 3.988 12 N -0.394 5.394 13 C 0.403 3.597 14 O -0.467 6.467 15 N -0.405 5.405 16 C 0.133 3.867 17 H 0.127 0.873 18 C -0.164 4.164 19 C 0.004 3.996 20 O -0.390 6.390 21 C -0.304 4.304 22 C -0.155 4.155 23 C -0.164 4.164 24 C -0.346 4.346 25 S 0.370 5.630 26 H 0.071 0.929 27 H 0.037 0.963 28 H 0.038 0.962 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.228 0.772 34 H 0.228 0.772 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.227 0.773 40 H 0.161 0.839 41 H 0.160 0.840 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 9.627 -25.705 0.002 27.449 hybrid contribution 0.149 0.520 0.821 0.983 sum 9.776 -25.186 0.823 27.029 Atomic orbital electron populations 1.69953 1.06053 1.26820 1.50453 1.25028 0.94862 0.99294 0.95265 0.86639 0.79562 0.83090 0.78587 1.20250 1.21267 1.20246 1.21164 0.92949 0.90955 1.51081 0.92713 1.19017 0.93826 0.90784 0.97660 1.21898 0.99814 0.93308 1.00871 1.21530 0.91239 0.84093 1.01902 1.45417 1.10600 1.04383 1.78963 1.15933 0.85277 0.80720 0.77768 1.90919 1.13860 1.84004 1.57884 1.45323 1.09027 1.04701 1.81437 1.19013 0.94204 0.77875 0.95568 0.87340 1.21974 0.99239 1.00708 0.94527 1.22279 0.97251 0.97880 0.82236 1.86355 1.58465 1.65490 1.28667 1.24572 0.97220 1.03148 1.05432 1.20142 1.00651 0.96124 0.98577 1.20184 0.91329 1.02180 1.02700 1.25678 1.02741 1.01563 1.04645 1.84275 1.00495 1.30804 1.47408 0.92856 0.96278 0.96249 0.92740 0.92752 0.91947 0.91828 0.77243 0.77217 0.90979 0.90165 0.92838 0.92708 0.77255 0.83866 0.84017 0.81732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.51 9.11 -34.44 -0.31 -14.83 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.12 -2.32 5.27 -26.73 -0.14 -2.46 16 11 C 0.14 2.33 5.67 -4.04 -0.02 2.30 16 12 N -0.74 -10.33 5.56 -65.22 -0.36 -10.69 16 13 C 0.70 10.04 7.13 -86.91 -0.62 9.42 16 14 O -0.59 -10.24 13.48 5.29 0.07 -10.17 16 15 N -0.75 -8.12 5.02 -59.81 -0.30 -8.42 16 16 C 0.24 2.44 2.69 -69.08 -0.19 2.26 16 17 H 0.11 1.22 7.56 -51.93 -0.39 0.82 16 18 C -0.13 -1.32 5.24 -26.73 -0.14 -1.46 16 19 C 0.08 1.01 5.65 37.16 0.21 1.22 16 20 O -0.58 -7.13 13.66 -35.23 -0.48 -7.62 16 21 C -0.19 -1.63 5.45 -36.00 -0.20 -1.82 16 22 C -0.12 -0.98 10.04 -41.21 -0.41 -1.39 16 23 C -0.13 -0.93 10.18 -41.21 -0.42 -1.35 16 24 C -0.21 -1.43 11.23 29.04 0.33 -1.11 16 25 S 0.11 0.82 22.31 -107.50 -2.40 -1.58 16 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.39 4.47 8.49 -40.82 -0.35 4.12 16 34 H 0.39 3.53 7.69 -40.82 -0.31 3.22 16 35 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.70 7.84 -51.92 -0.41 0.29 16 38 H 0.05 0.79 5.64 -51.93 -0.29 0.49 16 39 H 0.38 3.25 9.12 45.56 0.42 3.66 16 40 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 LS Contribution 363.95 15.07 5.48 5.48 Total: -1.00 -33.09 363.95 -9.95 -43.04 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -5.53 Total: 6.74 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -2.15 Total: -7.21 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 0.07 Total: -45.07 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.41 Total: -17.79 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.40 Total: -1.58 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.09 -9.95 -43.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741087136.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.231 kcal (2) G-P(sol) polarization free energy of solvation -33.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds