Wall clock time and date at job start Fri Apr 10 2020 22:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86791 * 120.00065 * 2 1 4 4 H 1.48498 * 109.47267 * 239.99882 * 3 2 1 5 5 H 1.48504 * 109.47216 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47138 * 119.99867 * 3 2 1 7 7 C 1.37880 * 119.99724 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99631 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00080 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46808 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47182 * 179.97438 * 10 9 7 12 12 N 1.46493 * 109.47084 * 179.97438 * 11 10 9 13 13 C 1.34784 * 119.99864 * 180.02562 * 12 11 10 14 14 O 1.21588 * 119.99858 * 359.72927 * 13 12 11 15 15 N 1.34777 * 119.99964 * 179.73002 * 13 12 11 16 16 C 1.46496 * 119.99614 * 180.02562 * 15 13 12 17 17 H 1.09001 * 109.47676 * 324.99283 * 16 15 13 18 18 C 1.52998 * 109.47575 * 84.99689 * 16 15 13 19 19 C 1.53003 * 109.47104 * 295.00182 * 18 16 15 20 20 O 1.42894 * 109.47314 * 180.02562 * 19 18 16 21 21 C 1.50706 * 109.46843 * 204.99675 * 16 15 13 22 22 C 1.33385 * 125.20216 * 139.71837 * 21 16 15 23 23 C 1.38428 * 114.92040 * 179.85819 * 22 21 16 24 24 C 1.33389 * 114.92045 * 0.43006 * 23 22 21 25 25 S 1.75880 * 125.20158 * 320.02195 * 21 16 15 26 26 H 0.96993 * 120.00031 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.47275 * 60.00022 * 9 7 2 28 28 H 1.09001 * 109.47061 * 299.99581 * 9 7 2 29 29 H 1.09007 * 109.47291 * 60.00087 * 10 9 7 30 30 H 1.08993 * 109.47243 * 299.99996 * 10 9 7 31 31 H 1.09007 * 109.46593 * 60.00081 * 11 10 9 32 32 H 1.09006 * 109.47216 * 300.00539 * 11 10 9 33 33 H 0.97000 * 120.00740 * 359.72857 * 12 11 10 34 34 H 0.96996 * 119.99887 * 359.97438 * 15 13 12 35 35 H 1.09007 * 109.47109 * 54.99272 * 18 16 15 36 36 H 1.08997 * 109.47748 * 174.99358 * 18 16 15 37 37 H 1.09007 * 109.46395 * 299.99527 * 19 18 16 38 38 H 1.08996 * 109.47009 * 59.99233 * 19 18 16 39 39 H 0.96694 * 114.00201 * 179.97438 * 20 19 18 40 40 H 1.07998 * 122.54317 * 0.02562 * 22 21 16 41 41 H 1.07995 * 122.53936 * 180.20368 * 23 22 21 42 42 H 1.08000 * 125.20730 * 179.74461 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9872 0.0012 12 7 2.4323 -6.1006 0.0006 13 6 1.9830 -7.3714 0.0005 14 8 0.7876 -7.5935 0.0058 15 7 2.8589 -8.3958 -0.0056 16 6 2.3705 -9.7769 -0.0063 17 1 1.4584 -9.8402 0.5872 18 6 2.0754 -10.2129 -1.4429 19 6 0.9237 -9.3760 -2.0034 20 8 0.6476 -9.7836 -3.3449 21 6 3.4198 -10.6810 0.5875 22 6 3.1787 -11.6995 1.4144 23 6 4.3029 -12.3922 1.8299 24 6 5.4577 -11.9307 1.3475 25 16 5.1504 -10.5499 0.3022 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8903 29 1 2.8720 -3.6044 0.8906 30 1 2.8719 -3.6044 -0.8894 31 1 0.8534 -5.0451 -0.8887 32 1 0.8538 -5.0446 0.8914 33 1 3.3860 -5.9234 -0.0041 34 1 3.8125 -8.2185 -0.0103 35 1 2.9638 -10.0657 -2.0570 36 1 1.7973 -11.2668 -1.4530 37 1 0.0352 -9.5233 -1.3892 38 1 1.2018 -8.3222 -1.9933 39 1 -0.0735 -9.2945 -3.7641 40 1 2.1817 -11.9653 1.7334 41 1 4.2493 -13.2397 2.4971 42 1 6.4323 -12.3416 1.5658 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000741087136.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:32 Heat of formation + Delta-G solvation = -87.807693 kcal Electronic energy + Delta-G solvation = -22923.608065 eV Core-core repulsion = 19414.833194 eV Total energy + Delta-G solvation = -3508.774871 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 312.129 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.39783 -39.11096 -37.99734 -37.08260 -36.22025 -35.19394 -33.40927 -32.06371 -30.48277 -28.51712 -26.62117 -24.91315 -24.05405 -22.56834 -22.29113 -21.88323 -20.35418 -19.30530 -18.64651 -18.46943 -18.17652 -17.20346 -16.74973 -16.49441 -16.41596 -16.17698 -15.51324 -15.27117 -15.20040 -14.97316 -14.39996 -14.25525 -13.74889 -13.64089 -13.59801 -13.48320 -13.29338 -13.01735 -12.72502 -12.59281 -12.54485 -12.39431 -12.09017 -11.66366 -11.65341 -11.59576 -11.29943 -11.15502 -10.92779 -10.53880 -10.43542 -9.90186 -9.65709 -9.40636 -8.18719 -6.30048 -0.00854 0.61527 1.04128 1.42032 1.44964 1.52622 1.58690 1.87167 2.10215 2.42527 3.09928 3.14989 3.25012 3.67574 3.97532 4.12934 4.17171 4.24580 4.25013 4.33084 4.48317 4.57615 4.60049 4.66977 4.71268 4.90313 4.97209 4.98149 5.07070 5.14777 5.17796 5.33200 5.37992 5.46828 5.54345 5.56235 5.72531 5.85254 5.90251 6.23653 6.76325 6.87009 7.00997 7.39367 7.51551 8.93166 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.018467 B = 0.002416 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.819540 B =11584.451253 C =12545.314275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.542 4.542 8 H 0.066 0.934 9 C 0.025 3.975 10 C -0.101 4.101 11 C 0.152 3.848 12 N -0.731 5.731 13 C 0.702 3.298 14 O -0.621 6.621 15 N -0.732 5.732 16 C 0.247 3.753 17 H 0.096 0.904 18 C -0.118 4.118 19 C 0.086 3.914 20 O -0.593 6.593 21 C -0.206 4.206 22 C -0.123 4.123 23 C -0.143 4.143 24 C -0.206 4.206 25 S 0.103 5.897 26 H 0.263 0.737 27 H -0.007 1.007 28 H -0.007 1.007 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.410 0.590 34 H 0.405 0.595 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.043 0.957 38 H 0.034 0.966 39 H 0.394 0.606 40 H 0.152 0.848 41 H 0.163 0.837 42 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.035 -27.172 1.049 29.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.580 4.580 8 H 0.084 0.916 9 C -0.013 4.013 10 C -0.139 4.139 11 C 0.027 3.973 12 N -0.387 5.387 13 C 0.402 3.598 14 O -0.502 6.502 15 N -0.389 5.389 16 C 0.139 3.861 17 H 0.114 0.886 18 C -0.157 4.157 19 C 0.008 3.992 20 O -0.401 6.401 21 C -0.324 4.324 22 C -0.155 4.155 23 C -0.173 4.173 24 C -0.341 4.341 25 S 0.367 5.633 26 H 0.072 0.928 27 H 0.011 0.989 28 H 0.011 0.989 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.246 0.754 34 H 0.241 0.759 35 H 0.091 0.909 36 H 0.107 0.893 37 H 0.061 0.939 38 H 0.052 0.948 39 H 0.243 0.757 40 H 0.170 0.830 41 H 0.181 0.819 42 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 12.219 -26.694 0.339 29.360 hybrid contribution -0.655 0.729 0.713 1.212 sum 11.564 -25.965 1.052 28.443 Atomic orbital electron populations 1.70102 1.07905 1.27844 1.51642 1.26014 0.95746 1.03508 0.94813 0.85483 0.78205 0.78005 0.79249 1.19059 1.21187 1.19046 1.21656 0.93726 0.92059 1.50518 0.91602 1.18927 0.94417 0.92852 0.95110 1.21594 0.98465 0.91850 1.02030 1.21076 0.91207 0.84366 1.00630 1.45081 1.10894 1.03639 1.79039 1.16012 0.85147 0.81118 0.77511 1.90902 1.15539 1.84496 1.59281 1.45179 1.09190 1.04368 1.80178 1.18927 0.94418 0.77489 0.95237 0.88641 1.21923 0.98365 1.00804 0.94610 1.22176 0.97556 0.97081 0.82356 1.86326 1.59331 1.65927 1.28545 1.24400 0.97502 1.03715 1.06770 1.20413 1.01647 0.95636 0.97773 1.20431 0.90888 1.02820 1.03114 1.26038 1.03834 1.00692 1.03572 1.84256 0.99569 1.31632 1.47874 0.92816 0.98901 0.98900 0.91480 0.91471 0.93288 0.93279 0.75397 0.75854 0.90907 0.89273 0.93872 0.94752 0.75653 0.83005 0.81908 0.79489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.97 13.29 21.45 0.28 -56.68 16 2 C 0.00 -0.18 5.46 84.65 0.46 0.28 16 3 Si 0.97 43.64 29.54 68.60 2.03 45.67 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 5 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 6 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 7 C -0.54 -30.08 9.11 25.60 0.23 -29.84 16 8 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16 9 C 0.02 1.27 4.97 29.85 0.15 1.42 16 10 C -0.10 -3.85 5.27 30.60 0.16 -3.69 16 11 C 0.15 5.26 5.67 86.38 0.49 5.75 16 12 N -0.73 -19.89 5.56 -478.52 -2.66 -22.55 16 13 C 0.70 19.91 7.13 179.05 1.28 21.19 16 14 O -0.62 -22.08 13.48 -3.99 -0.05 -22.13 16 15 N -0.73 -15.34 5.02 -461.40 -2.32 -17.66 16 16 C 0.25 4.85 2.69 44.25 0.12 4.97 16 17 H 0.10 2.15 7.56 -2.39 -0.02 2.14 16 18 C -0.12 -2.42 5.24 30.59 0.16 -2.26 16 19 C 0.09 2.17 5.65 71.98 0.41 2.57 16 20 O -0.59 -14.33 13.66 -148.98 -2.03 -16.36 16 21 C -0.21 -3.33 5.45 24.59 0.13 -3.19 16 22 C -0.12 -1.73 10.04 21.22 0.21 -1.52 16 23 C -0.14 -1.62 10.18 21.22 0.22 -1.40 16 24 C -0.21 -2.25 11.23 66.72 0.75 -1.50 16 25 S 0.10 1.39 22.31 -56.49 -1.26 0.13 16 26 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 27 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 28 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 29 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 30 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 32 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 33 H 0.41 8.57 8.49 -92.71 -0.79 7.78 16 34 H 0.41 6.69 7.69 -92.71 -0.71 5.98 16 35 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.04 1.16 7.84 -2.38 -0.02 1.14 16 38 H 0.03 1.01 5.64 -2.39 -0.01 0.99 16 39 H 0.39 6.69 9.12 -74.06 -0.68 6.01 16 40 H 0.15 1.77 8.06 -2.91 -0.02 1.75 16 41 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 42 H 0.19 1.11 8.06 -2.91 -0.02 1.09 16 Total: -1.00 -71.65 363.95 -2.37 -74.02 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: -1.12 Total: 22.79 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: 4.77 Total: -7.22 kcal Atomic # 7 Polarization: -92.19 SS G_CDS: -4.69 Total: -96.89 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: -2.09 Total: -38.50 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: 1.39 SS G_CDS: -1.26 Total: 0.13 kcal Total: -71.65 -2.37 -74.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000741087136.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.789 kcal (2) G-P(sol) polarization free energy of solvation -71.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds