Wall clock time and date at job start Fri Apr 10 2020 22:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38397 * 120.85521 * 2 1 4 4 C 1.38306 * 119.30595 * 179.97438 * 3 2 1 5 5 N 1.31965 * 121.07971 * 0.02562 * 4 3 2 6 6 C 1.31665 * 121.87561 * 0.02562 * 5 4 3 7 7 C 1.39555 * 120.56965 * 359.74199 * 6 5 4 8 8 C 1.47837 * 120.56177 * 180.28471 * 7 6 5 9 9 O 1.21554 * 120.00222 * 186.33273 * 8 7 6 10 10 N 1.34772 * 120.00159 * 6.33050 * 8 7 6 11 11 C 1.46500 * 120.00553 * 180.02562 * 10 8 7 12 12 C 1.50697 * 109.47551 * 180.02562 * 11 10 8 13 13 C 1.38294 * 119.92938 * 269.72598 * 12 11 10 14 14 C 1.38101 * 120.06894 * 179.72374 * 13 12 11 15 15 C 1.38883 * 119.92952 * 0.57305 * 14 13 12 16 16 O 1.35744 * 120.07103 * 179.68085 * 15 14 13 17 17 C 1.34830 * 117.00189 * 185.74655 * 16 15 14 18 18 H 1.08003 * 119.99618 * 354.86934 * 17 16 15 19 19 C 1.38648 * 120.00184 * 174.87354 * 17 16 15 20 20 N 1.31557 * 120.00022 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 120.00163 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46972 * 59.99826 * 21 19 17 23 23 H 1.48493 * 109.47320 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46809 * 299.99925 * 21 19 17 25 25 C 1.38887 * 119.85888 * 359.70414 * 15 14 13 26 26 C 1.38092 * 119.92974 * 359.97438 * 25 15 14 27 27 H 1.08994 * 109.47065 * 96.84523 * 1 2 3 28 28 H 1.09000 * 109.46721 * 336.85005 * 1 2 3 29 29 H 1.09000 * 109.46880 * 216.85166 * 1 2 3 30 30 H 1.08003 * 120.35169 * 359.95729 * 3 2 1 31 31 H 1.08003 * 119.46364 * 179.97438 * 4 3 2 32 32 H 1.08007 * 119.71095 * 180.02562 * 6 5 4 33 33 H 0.97006 * 120.00095 * 0.02562 * 10 8 7 34 34 H 1.09005 * 109.47049 * 300.00710 * 11 10 8 35 35 H 1.09009 * 109.46815 * 59.99563 * 11 10 8 36 36 H 1.07998 * 119.97072 * 359.97438 * 13 12 11 37 37 H 1.07998 * 120.03748 * 180.26984 * 14 13 12 38 38 H 0.97006 * 120.00216 * 180.02562 * 20 19 17 39 39 H 1.07993 * 120.02823 * 179.97438 * 25 15 14 40 40 H 1.08005 * 119.96688 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5994 1.1507 0.0005 5 7 4.2498 0.0025 0.0005 6 6 3.6197 -1.1536 -0.0005 7 6 2.2250 -1.2017 0.0038 8 6 1.5176 -2.4999 0.0090 9 8 0.3077 -2.5333 -0.1034 10 7 2.2142 -3.6463 0.1384 11 6 1.5134 -4.9328 0.1430 12 6 2.5134 -6.0492 0.3000 13 6 3.0804 -6.6302 -0.8195 14 6 4.0014 -7.6495 -0.6788 15 6 4.3492 -8.0992 0.5884 16 8 5.2493 -9.1053 0.7299 17 6 5.4528 -9.5737 1.9777 18 1 4.9736 -9.0950 2.8189 19 6 6.2773 -10.6698 2.1809 20 7 6.8606 -11.2531 1.1562 21 14 6.5598 -11.3183 3.9099 22 1 5.2619 -11.7309 4.5020 23 1 7.4732 -12.4878 3.8568 24 1 7.1682 -10.2518 4.7452 25 6 3.7736 -7.5175 1.7106 26 6 2.8583 -6.4940 1.5633 27 1 -0.3633 -0.1225 -1.0203 28 1 -0.3633 0.9449 0.4040 29 1 -0.3633 -0.8223 0.6163 30 1 1.6966 2.1346 -0.0007 31 1 4.1558 2.0763 0.0001 32 1 4.1871 -2.0726 0.0000 33 1 3.1797 -3.6197 0.2284 34 1 0.8070 -4.9588 0.9727 35 1 0.9747 -5.0565 -0.7966 36 1 2.8058 -6.2837 -1.8049 37 1 4.4472 -8.0999 -1.5533 38 1 7.4372 -12.0202 1.2983 39 1 4.0417 -7.8652 2.6972 40 1 2.4106 -6.0410 2.4356 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000742064209.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:35 Heat of formation + Delta-G solvation = -4.625719 kcal Electronic energy + Delta-G solvation = -23851.742286 eV Core-core repulsion = 20211.130505 eV Total energy + Delta-G solvation = -3640.611782 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.95347 -39.39283 -38.87020 -36.92368 -34.85186 -33.86574 -32.46392 -31.92245 -30.31949 -29.86529 -28.13089 -26.04059 -25.11136 -24.16471 -22.41893 -22.09017 -20.85333 -20.67018 -18.16512 -18.03120 -17.13470 -16.88173 -16.53399 -15.65083 -15.48096 -15.13238 -14.78365 -14.62963 -14.32685 -14.09346 -13.80195 -13.65134 -13.45186 -13.08824 -12.97449 -12.86722 -12.81381 -12.65314 -12.26568 -12.10881 -11.71042 -11.41938 -10.98104 -10.83172 -10.75014 -10.51956 -10.24969 -9.85156 -9.57936 -9.54652 -9.46071 -9.03458 -8.92852 -8.32254 -7.36519 -6.55027 -4.14107 0.37482 0.87947 2.01213 2.09723 2.70765 3.06879 3.08140 3.11851 3.23142 3.56069 3.88734 4.01095 4.35822 4.38278 4.44670 4.57386 4.74183 4.98966 5.05737 5.11798 5.18846 5.22295 5.33786 5.36854 5.48132 5.53226 5.61914 5.75670 5.82048 5.85091 6.08061 6.09099 6.28303 6.31121 6.40325 6.56349 6.76786 6.92116 7.10247 7.23166 7.32155 7.44846 7.55973 7.68085 7.89325 8.08643 8.90070 9.57598 10.62261 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.022972 B = 0.002395 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.563888 B =11687.986862 C =12125.376696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.017 3.983 3 C -0.187 4.187 4 C 0.121 3.879 5 N -0.492 5.492 6 C 0.140 3.860 7 C -0.192 4.192 8 C 0.559 3.441 9 O -0.537 6.537 10 N -0.715 5.715 11 C 0.180 3.820 12 C -0.218 4.218 13 C -0.054 4.054 14 C -0.195 4.195 15 C 0.161 3.839 16 O -0.172 6.172 17 C -0.394 4.394 18 H 0.093 0.907 19 C 0.041 3.959 20 N -0.859 5.859 21 Si 0.942 3.058 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.269 1.269 25 C -0.237 4.237 26 C -0.050 4.050 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.141 0.859 31 H 0.160 0.840 32 H 0.161 0.839 33 H 0.401 0.599 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.113 0.887 37 H 0.119 0.881 38 H 0.272 0.728 39 H 0.128 0.872 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.710 20.668 -1.233 22.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.009 3.991 3 C -0.206 4.206 4 C -0.034 4.034 5 N -0.201 5.201 6 C -0.018 4.018 7 C -0.197 4.197 8 C 0.345 3.655 9 O -0.416 6.416 10 N -0.366 5.366 11 C 0.058 3.942 12 C -0.220 4.220 13 C -0.072 4.072 14 C -0.214 4.214 15 C 0.106 3.894 16 O -0.074 6.074 17 C -0.470 4.470 18 H 0.111 0.889 19 C -0.164 4.164 20 N -0.493 5.493 21 Si 0.766 3.234 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.194 1.194 25 C -0.256 4.256 26 C -0.069 4.069 27 H 0.100 0.900 28 H 0.081 0.919 29 H 0.118 0.882 30 H 0.158 0.842 31 H 0.177 0.823 32 H 0.178 0.822 33 H 0.237 0.763 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.131 0.869 37 H 0.137 0.863 38 H 0.082 0.918 39 H 0.146 0.854 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.354 20.275 -1.514 21.980 hybrid contribution -0.146 -0.337 0.945 1.014 sum -8.500 19.937 -0.569 21.681 Atomic orbital electron populations 1.21088 0.89081 1.03479 1.04192 1.20514 0.97580 0.91345 0.89662 1.22082 0.95582 0.98677 1.04302 1.22992 0.91779 0.96484 0.92178 1.67728 1.40839 0.98293 1.13226 1.23062 0.90483 0.96725 0.91569 1.20944 0.95238 0.94531 1.09013 1.18041 0.86969 0.83503 0.76968 1.90722 1.13525 1.87161 1.50159 1.46316 1.11222 1.05855 1.73208 1.20020 0.92881 0.79330 1.01939 1.19179 1.06082 1.02958 0.93771 1.20531 0.94884 0.94652 0.97168 1.20216 1.03718 1.02191 0.95315 1.19448 0.88038 0.88578 0.93327 1.83975 1.49147 1.42588 1.31715 1.21313 1.30342 1.13357 0.82020 0.88944 1.25321 0.95802 0.95410 0.99886 1.70026 1.28136 1.20685 1.30425 0.85762 0.78805 0.78674 0.80115 1.19406 1.20187 1.19403 1.21157 1.03575 1.01645 0.99254 1.20640 0.95435 0.95039 0.95739 0.89979 0.91895 0.88240 0.84156 0.82268 0.82233 0.76340 0.91326 0.91255 0.86927 0.86338 0.91781 0.85400 0.87385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 8.83 36.01 0.32 -0.79 16 2 C 0.02 0.17 5.95 -103.91 -0.62 -0.44 16 3 C -0.19 -1.47 9.78 -39.50 -0.39 -1.85 16 4 C 0.12 1.02 11.17 -17.47 -0.20 0.82 16 5 N -0.49 -5.33 10.35 -12.91 -0.13 -5.47 16 6 C 0.14 1.48 10.70 -17.13 -0.18 1.29 16 7 C -0.19 -2.13 5.89 -104.83 -0.62 -2.75 16 8 C 0.56 7.08 7.72 -12.34 -0.10 6.98 16 9 O -0.54 -8.01 13.52 5.32 0.07 -7.93 16 10 N -0.71 -8.53 5.50 -62.43 -0.34 -8.88 16 11 C 0.18 2.38 5.80 -5.20 -0.03 2.35 16 12 C -0.22 -3.36 5.25 -104.58 -0.55 -3.91 16 13 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 14 C -0.20 -3.85 9.99 -39.39 -0.39 -4.24 16 15 C 0.16 3.68 6.65 -39.10 -0.26 3.42 16 16 O -0.17 -4.71 9.76 0.07 0.00 -4.71 16 17 C -0.39 -10.63 9.49 30.88 0.29 -10.33 16 18 H 0.09 2.29 5.21 -52.48 -0.27 2.01 16 19 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 20 N -0.86 -24.50 13.67 55.48 0.76 -23.75 16 21 Si 0.94 19.89 29.55 -169.99 -5.02 14.86 16 22 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 23 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 24 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 25 C -0.24 -4.81 9.17 -39.39 -0.36 -5.17 16 26 C -0.05 -0.83 9.69 -39.61 -0.38 -1.22 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.42 8.06 -51.93 -0.42 0.00 16 29 H 0.10 1.11 5.98 -51.93 -0.31 0.80 16 30 H 0.14 0.70 8.06 -52.48 -0.42 0.27 16 31 H 0.16 0.84 8.06 -52.48 -0.42 0.42 16 32 H 0.16 1.41 6.47 -52.48 -0.34 1.07 16 33 H 0.40 4.26 6.57 -40.82 -0.27 3.99 16 34 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 35 H 0.07 0.91 8.08 -51.92 -0.42 0.49 16 36 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 37 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 38 H 0.27 7.13 8.31 -40.82 -0.34 6.80 16 39 H 0.13 2.62 5.64 -52.49 -0.30 2.32 16 40 H 0.11 1.57 8.06 -52.48 -0.42 1.14 16 LS Contribution 345.77 15.07 5.21 5.21 Total: -1.00 -31.36 345.77 -7.82 -39.18 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -4.42 Total: 7.59 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: -3.94 Total: -16.11 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.28 Total: -38.09 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.07 Total: -12.65 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.36 -7.82 -39.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742064209.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.558 kcal (2) G-P(sol) polarization free energy of solvation -31.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds