Wall clock time and date at job start Fri Apr 10 2020 22:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38397 * 120.85521 * 2 1 4 4 C 1.38306 * 119.30595 * 179.97438 * 3 2 1 5 5 N 1.31965 * 121.07971 * 0.02562 * 4 3 2 6 6 C 1.31665 * 121.87561 * 0.02562 * 5 4 3 7 7 C 1.39555 * 120.56965 * 359.74199 * 6 5 4 8 8 C 1.47837 * 120.56177 * 180.28471 * 7 6 5 9 9 O 1.21554 * 120.00222 * 186.33273 * 8 7 6 10 10 N 1.34772 * 120.00159 * 6.33050 * 8 7 6 11 11 C 1.46500 * 120.00553 * 180.02562 * 10 8 7 12 12 C 1.50697 * 109.47551 * 180.02562 * 11 10 8 13 13 C 1.38294 * 119.92938 * 269.72598 * 12 11 10 14 14 C 1.38101 * 120.06894 * 179.72374 * 13 12 11 15 15 C 1.38883 * 119.92952 * 0.57305 * 14 13 12 16 16 O 1.35744 * 120.07103 * 179.68085 * 15 14 13 17 17 C 1.34830 * 117.00189 * 185.74655 * 16 15 14 18 18 H 1.08003 * 119.99618 * 354.86934 * 17 16 15 19 19 C 1.38648 * 120.00184 * 174.87354 * 17 16 15 20 20 N 1.31557 * 120.00022 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 120.00163 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46972 * 59.99826 * 21 19 17 23 23 H 1.48493 * 109.47320 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46809 * 299.99925 * 21 19 17 25 25 C 1.38887 * 119.85888 * 359.70414 * 15 14 13 26 26 C 1.38092 * 119.92974 * 359.97438 * 25 15 14 27 27 H 1.08994 * 109.47065 * 96.84523 * 1 2 3 28 28 H 1.09000 * 109.46721 * 336.85005 * 1 2 3 29 29 H 1.09000 * 109.46880 * 216.85166 * 1 2 3 30 30 H 1.08003 * 120.35169 * 359.95729 * 3 2 1 31 31 H 1.08003 * 119.46364 * 179.97438 * 4 3 2 32 32 H 1.08007 * 119.71095 * 180.02562 * 6 5 4 33 33 H 0.97006 * 120.00095 * 0.02562 * 10 8 7 34 34 H 1.09005 * 109.47049 * 300.00710 * 11 10 8 35 35 H 1.09009 * 109.46815 * 59.99563 * 11 10 8 36 36 H 1.07998 * 119.97072 * 359.97438 * 13 12 11 37 37 H 1.07998 * 120.03748 * 180.26984 * 14 13 12 38 38 H 0.97006 * 120.00216 * 180.02562 * 20 19 17 39 39 H 1.07993 * 120.02823 * 179.97438 * 25 15 14 40 40 H 1.08005 * 119.96688 * 180.02562 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2168 1.1881 0.0000 4 6 3.5994 1.1507 0.0005 5 7 4.2498 0.0025 0.0005 6 6 3.6197 -1.1536 -0.0005 7 6 2.2250 -1.2017 0.0038 8 6 1.5176 -2.4999 0.0090 9 8 0.3077 -2.5333 -0.1034 10 7 2.2142 -3.6463 0.1384 11 6 1.5134 -4.9328 0.1430 12 6 2.5134 -6.0492 0.3000 13 6 3.0804 -6.6302 -0.8195 14 6 4.0014 -7.6495 -0.6788 15 6 4.3492 -8.0992 0.5884 16 8 5.2493 -9.1053 0.7299 17 6 5.4528 -9.5737 1.9777 18 1 4.9736 -9.0950 2.8189 19 6 6.2773 -10.6698 2.1809 20 7 6.8606 -11.2531 1.1562 21 14 6.5598 -11.3183 3.9099 22 1 5.2619 -11.7309 4.5020 23 1 7.4732 -12.4878 3.8568 24 1 7.1682 -10.2518 4.7452 25 6 3.7736 -7.5175 1.7106 26 6 2.8583 -6.4940 1.5633 27 1 -0.3633 -0.1225 -1.0203 28 1 -0.3633 0.9449 0.4040 29 1 -0.3633 -0.8223 0.6163 30 1 1.6966 2.1346 -0.0007 31 1 4.1558 2.0763 0.0001 32 1 4.1871 -2.0726 0.0000 33 1 3.1797 -3.6197 0.2284 34 1 0.8070 -4.9588 0.9727 35 1 0.9747 -5.0565 -0.7966 36 1 2.8058 -6.2837 -1.8049 37 1 4.4472 -8.0999 -1.5533 38 1 7.4372 -12.0202 1.2983 39 1 4.0417 -7.8652 2.6972 40 1 2.4106 -6.0410 2.4356 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000742064209.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:34 Heat of formation + Delta-G solvation = -24.768045 kcal Electronic energy + Delta-G solvation = -23852.615723 eV Core-core repulsion = 20211.130505 eV Total energy + Delta-G solvation = -3641.485219 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.76829 -40.85941 -39.97256 -38.49214 -35.94832 -34.67762 -34.29545 -32.83674 -31.83812 -31.13509 -28.91720 -27.66731 -26.47757 -25.09280 -23.65410 -23.19535 -22.12578 -21.78864 -19.88492 -19.11135 -18.71280 -17.78578 -17.23800 -16.72444 -16.51765 -16.39875 -16.14235 -16.04116 -15.59735 -15.46518 -15.16388 -14.88920 -14.59633 -14.36708 -14.17354 -13.80235 -13.67253 -13.64105 -13.47609 -13.26329 -13.05667 -12.91656 -12.52051 -12.38108 -12.25752 -12.14181 -11.21067 -11.12827 -10.80528 -10.62176 -10.39941 -10.26433 -10.02160 -9.81519 -9.02017 -8.48553 -6.16927 -0.36882 0.18191 0.52947 0.57315 1.35623 1.45295 1.51449 1.81586 2.16638 2.18117 2.81084 2.84244 3.15526 3.33680 3.48780 3.66011 3.71929 3.81460 3.87661 4.02440 4.04728 4.16849 4.43453 4.44957 4.55967 4.57963 4.68121 4.75492 4.78880 4.80653 4.85052 5.03508 5.13592 5.15601 5.25969 5.31874 5.44256 5.52038 5.62922 5.68749 5.73924 6.00931 6.15326 6.47210 6.86191 6.96160 7.12136 7.75243 8.73987 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.022972 B = 0.002395 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1218.563888 B =11687.986862 C =12125.376696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.004 3.996 3 C -0.176 4.176 4 C 0.120 3.880 5 N -0.517 5.517 6 C 0.134 3.866 7 C -0.209 4.209 8 C 0.561 3.439 9 O -0.561 6.561 10 N -0.711 5.711 11 C 0.186 3.814 12 C -0.184 4.184 13 C -0.043 4.043 14 C -0.205 4.205 15 C 0.123 3.877 16 O -0.228 6.228 17 C -0.415 4.415 18 H 0.104 0.896 19 C -0.021 4.021 20 N -0.919 5.919 21 Si 1.017 2.983 22 H -0.258 1.258 23 H -0.273 1.273 24 H -0.257 1.257 25 C -0.244 4.244 26 C -0.045 4.045 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.077 0.923 30 H 0.174 0.826 31 H 0.191 0.809 32 H 0.168 0.832 33 H 0.408 0.592 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.148 0.852 37 H 0.115 0.885 38 H 0.273 0.727 39 H 0.120 0.880 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.394 24.057 -0.530 26.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.004 4.004 3 C -0.196 4.196 4 C -0.035 4.035 5 N -0.227 5.227 6 C -0.024 4.024 7 C -0.214 4.214 8 C 0.349 3.651 9 O -0.442 6.442 10 N -0.362 5.362 11 C 0.063 3.937 12 C -0.185 4.185 13 C -0.061 4.061 14 C -0.224 4.224 15 C 0.072 3.928 16 O -0.134 6.134 17 C -0.490 4.490 18 H 0.121 0.879 19 C -0.219 4.219 20 N -0.556 5.556 21 Si 0.836 3.164 22 H -0.182 1.182 23 H -0.197 1.197 24 H -0.181 1.181 25 C -0.263 4.263 26 C -0.064 4.064 27 H 0.096 0.904 28 H 0.107 0.893 29 H 0.095 0.905 30 H 0.192 0.808 31 H 0.208 0.792 32 H 0.185 0.815 33 H 0.245 0.755 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.166 0.834 37 H 0.133 0.867 38 H 0.082 0.918 39 H 0.138 0.862 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.068 23.722 -0.817 25.783 hybrid contribution 0.125 -0.992 0.578 1.155 sum -9.943 22.730 -0.239 24.810 Atomic orbital electron populations 1.21026 0.88708 1.03982 1.03646 1.20784 0.98072 0.91778 0.89770 1.22417 0.95417 0.99258 1.02488 1.23586 0.92463 0.96846 0.90618 1.67767 1.41652 0.99057 1.14188 1.23186 0.90345 0.97276 0.91599 1.20872 0.95516 0.94153 1.10848 1.18243 0.86651 0.84005 0.76193 1.90720 1.14593 1.87539 1.51355 1.46126 1.11557 1.05295 1.73236 1.19937 0.92084 0.78847 1.02798 1.19487 1.04160 1.01977 0.92923 1.20889 0.93063 0.92940 0.99249 1.20452 1.04547 1.03129 0.94265 1.20009 0.88809 0.88663 0.95358 1.83946 1.52196 1.45247 1.32062 1.21793 1.30734 1.13924 0.82595 0.87906 1.26578 0.95357 0.95454 1.04531 1.70173 1.30315 1.22040 1.33118 0.84666 0.79100 0.78145 0.74458 1.18208 1.19739 1.18084 1.21246 1.04296 1.02541 0.98232 1.20947 0.94127 0.93694 0.97593 0.90353 0.89288 0.90472 0.80815 0.79182 0.81470 0.75487 0.90679 0.90411 0.83430 0.86696 0.91784 0.86189 0.84280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.88 8.83 71.24 0.63 -1.25 16 2 C 0.00 0.08 5.95 -19.40 -0.12 -0.04 16 3 C -0.18 -2.15 9.78 22.32 0.22 -1.93 16 4 C 0.12 1.63 11.17 84.69 0.95 2.58 16 5 N -0.52 -10.09 10.35 -194.75 -2.01 -12.10 16 6 C 0.13 2.59 10.70 85.04 0.91 3.50 16 7 C -0.21 -4.25 5.89 -20.00 -0.12 -4.36 16 8 C 0.56 13.11 7.72 86.78 0.67 13.78 16 9 O -0.56 -15.80 13.52 -3.89 -0.05 -15.86 16 10 N -0.71 -15.06 5.50 -469.71 -2.58 -17.64 16 11 C 0.19 4.27 5.80 85.63 0.50 4.76 16 12 C -0.18 -5.13 5.25 -19.84 -0.10 -5.24 16 13 C -0.04 -1.30 9.69 22.25 0.22 -1.09 16 14 C -0.20 -8.13 9.99 22.39 0.22 -7.91 16 15 C 0.12 5.80 6.65 22.58 0.15 5.95 16 16 O -0.23 -13.33 9.76 -22.68 -0.22 -13.55 16 17 C -0.41 -23.49 9.49 67.92 0.64 -22.84 16 18 H 0.10 5.30 5.21 -2.91 -0.02 5.29 16 19 C -0.02 -1.18 5.49 84.83 0.47 -0.72 16 20 N -0.92 -55.50 13.67 21.61 0.30 -55.20 16 21 Si 1.02 41.92 29.55 68.60 2.03 43.95 16 22 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 23 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 24 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 25 C -0.24 -9.93 9.17 22.39 0.21 -9.72 16 26 C -0.05 -1.41 9.69 22.25 0.22 -1.20 16 27 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.09 0.91 8.06 -2.39 -0.02 0.89 16 29 H 0.08 1.62 5.98 -2.39 -0.01 1.60 16 30 H 0.17 0.89 8.06 -2.91 -0.02 0.86 16 31 H 0.19 1.24 8.06 -2.91 -0.02 1.22 16 32 H 0.17 2.69 6.47 -2.91 -0.02 2.68 16 33 H 0.41 7.62 6.57 -92.70 -0.61 7.01 16 34 H 0.07 1.72 8.08 -2.38 -0.02 1.70 16 35 H 0.08 1.75 8.08 -2.38 -0.02 1.73 16 36 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 37 H 0.11 4.56 8.06 -2.91 -0.02 4.54 16 38 H 0.27 15.16 8.31 -92.70 -0.77 14.39 16 39 H 0.12 5.01 5.64 -2.91 -0.02 4.99 16 40 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -73.20 345.77 3.59 -69.61 By element: Atomic # 1 Polarization: 26.05 SS G_CDS: 0.48 Total: 26.53 kcal Atomic # 6 Polarization: -31.39 SS G_CDS: 5.65 Total: -25.74 kcal Atomic # 7 Polarization: -80.64 SS G_CDS: -4.30 Total: -84.95 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -0.27 Total: -29.41 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -73.20 3.59 -69.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742064209.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.843 kcal (2) G-P(sol) polarization free energy of solvation -73.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds