Wall clock time and date at job start Fri Apr 10 2020 22:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38280 * 119.92587 * 2 1 4 4 C 1.38116 * 120.07188 * 179.97438 * 3 2 1 5 5 C 1.38891 * 119.92180 * 359.97438 * 4 3 2 6 6 N 1.39844 * 120.06630 * 179.97438 * 5 4 3 7 7 C 1.46504 * 119.99757 * 123.76683 * 6 5 4 8 8 C 1.50706 * 109.47075 * 346.93997 * 7 6 5 9 9 H 1.07997 * 120.00096 * 359.97438 * 8 7 6 10 10 C 1.37883 * 119.99605 * 180.02562 * 8 7 6 11 11 N 1.31507 * 120.00202 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99484 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47244 * 89.99517 * 12 10 8 14 14 H 1.48503 * 109.46933 * 209.99493 * 12 10 8 15 15 H 1.48505 * 109.47318 * 329.99743 * 12 10 8 16 16 C 1.34768 * 120.00424 * 303.76464 * 6 5 4 17 17 O 1.21553 * 119.99548 * 353.17851 * 16 6 5 18 18 C 1.47928 * 120.00319 * 173.17774 * 16 6 5 19 19 C 1.39451 * 119.74227 * 133.05873 * 18 16 6 20 20 C 1.38455 * 119.06211 * 180.02562 * 19 18 16 21 21 C 1.38728 * 118.53920 * 0.02562 * 20 19 18 22 22 C 1.38407 * 119.39517 * 0.02562 * 21 20 19 23 23 N 1.31721 * 120.90140 * 359.97438 * 22 21 20 24 24 O 1.41594 * 119.20884 * 180.02562 * 23 22 21 25 25 C 1.38888 * 119.86023 * 0.24915 * 5 4 3 26 26 C 1.38115 * 119.92572 * 359.47863 * 25 5 4 27 27 H 1.09001 * 109.46956 * 90.00235 * 1 2 3 28 28 H 1.08998 * 109.47426 * 210.00164 * 1 2 3 29 29 H 1.09001 * 109.47203 * 330.00542 * 1 2 3 30 30 H 1.07994 * 119.96541 * 359.97253 * 3 2 1 31 31 H 1.07994 * 120.03387 * 180.02562 * 4 3 2 32 32 H 1.08995 * 109.46937 * 106.94125 * 7 6 5 33 33 H 1.08995 * 109.46878 * 226.94247 * 7 6 5 34 34 H 0.96996 * 120.00100 * 180.02562 * 11 10 8 35 35 H 1.07990 * 120.46711 * 0.04856 * 19 18 16 36 36 H 1.08007 * 120.73073 * 180.27338 * 20 19 18 37 37 H 1.07999 * 120.30474 * 179.97438 * 21 20 19 38 38 H 1.07998 * 119.54551 * 180.02562 * 22 21 20 39 39 H 1.08001 * 120.04052 * 179.74878 * 25 5 4 40 40 H 1.07989 * 119.96305 * 180.27437 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2020 0.0005 5 6 4.2739 0.0000 0.0016 6 7 5.6723 0.0000 0.0016 7 6 6.4048 -0.7043 1.0570 8 6 5.4573 -1.0628 2.1727 9 1 4.4140 -0.7927 2.1028 10 6 5.9227 -1.7348 3.2831 11 7 7.1932 -2.0632 3.3684 12 14 4.7483 -2.1785 4.6663 13 1 4.1629 -3.5186 4.4079 14 1 5.4868 -2.2009 5.9545 15 1 3.6616 -1.1688 4.7362 16 6 6.3463 0.6478 -0.9692 17 8 5.7449 1.1260 -1.9111 18 6 7.8177 0.7769 -0.8885 19 6 8.5994 0.4946 -2.0083 20 6 9.9753 0.6196 -1.9168 21 6 10.5254 1.0223 -0.7086 22 6 9.6908 1.2854 0.3637 23 7 8.3845 1.1590 0.2512 24 8 7.5643 1.4380 1.3711 25 6 3.5780 -1.2020 -0.0031 26 6 2.1968 -1.1985 0.0021 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3634 0.8900 0.5137 30 1 1.6551 2.1327 -0.0004 31 1 4.1162 2.1383 0.0010 32 1 6.8458 -1.6135 0.6485 33 1 7.1940 -0.0596 1.4437 34 1 7.5205 -2.5362 4.1494 35 1 8.1381 0.1833 -2.9337 36 1 10.6061 0.4121 -2.7686 37 1 11.5951 1.1287 -0.6055 38 1 10.1164 1.5994 1.3053 39 1 4.1162 -2.1383 -0.0064 40 1 1.6551 -2.1327 0.0029 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000745398820.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:37 Heat of formation + Delta-G solvation = 93.108413 kcal Electronic energy + Delta-G solvation = -26063.620861 eV Core-core repulsion = 22427.247149 eV Total energy + Delta-G solvation = -3636.373712 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.40048 -39.58699 -37.90198 -35.45874 -34.42515 -32.51364 -32.08728 -30.98476 -30.32977 -29.82864 -27.20854 -26.48364 -24.57452 -24.04474 -22.70592 -21.96120 -21.41210 -19.58062 -17.77995 -17.47897 -16.78176 -16.40979 -15.71062 -15.42510 -15.10389 -14.97606 -14.80158 -14.76779 -14.31738 -13.84500 -13.59062 -13.37278 -12.96751 -12.79644 -12.46201 -12.18218 -12.12301 -11.95683 -11.87785 -11.38249 -11.06862 -10.93017 -10.80152 -10.73009 -10.44143 -10.11792 -9.69608 -9.59149 -9.26397 -8.95574 -8.74048 -8.48728 -8.22346 -7.56365 -6.93273 -6.00041 -3.94197 0.40381 0.69887 1.90917 2.09343 2.50330 2.98502 3.34369 3.39664 3.40338 3.46951 3.58996 4.40562 4.45886 4.49249 4.56054 4.60219 4.71876 4.84720 5.35255 5.35881 5.37966 5.40130 5.61466 5.64189 5.73192 5.76492 5.83987 5.86392 6.06667 6.08154 6.30604 6.32920 6.65880 6.82167 6.88416 7.07128 7.16309 7.17815 7.19787 7.43370 7.66493 7.81311 7.93453 8.29586 8.45425 8.68624 9.08511 9.63011 11.11758 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.011073 B = 0.006341 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.040930 B = 4414.991108 C = 6393.952773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.110 4.110 3 C -0.116 4.116 4 C -0.111 4.111 5 C 0.180 3.820 6 N -0.508 5.508 7 C 0.153 3.847 8 C -0.514 4.514 9 H 0.068 0.932 10 C 0.063 3.937 11 N -0.895 5.895 12 Si 0.894 3.106 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.273 1.273 16 C 0.558 3.442 17 O -0.545 6.545 18 C 0.070 3.930 19 C -0.077 4.077 20 C -0.092 4.092 21 C -0.113 4.113 22 C 0.071 3.929 23 N -0.109 5.109 24 O -0.452 6.452 25 C -0.095 4.095 26 C -0.118 4.118 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.004 0.996 33 H 0.150 0.850 34 H 0.260 0.740 35 H 0.164 0.836 36 H 0.155 0.845 37 H 0.163 0.837 38 H 0.186 0.814 39 H 0.127 0.873 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.892 3.817 -11.028 12.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.110 4.110 3 C -0.135 4.135 4 C -0.130 4.130 5 C 0.088 3.912 6 N -0.230 5.230 7 C 0.037 3.963 8 C -0.552 4.552 9 H 0.086 0.914 10 C -0.138 4.138 11 N -0.534 5.534 12 Si 0.722 3.278 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.197 1.197 16 C 0.344 3.656 17 O -0.425 6.425 18 C -0.057 4.057 19 C -0.096 4.096 20 C -0.118 4.118 21 C -0.131 4.131 22 C -0.074 4.074 23 N 0.213 4.787 24 O -0.511 6.511 25 C -0.115 4.115 26 C -0.137 4.137 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.022 0.978 33 H 0.164 0.836 34 H 0.069 0.931 35 H 0.182 0.818 36 H 0.173 0.827 37 H 0.181 0.819 38 H 0.203 0.797 39 H 0.145 0.855 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.488 4.032 -11.035 12.256 hybrid contribution -0.439 -0.467 1.254 1.408 sum 3.049 3.566 -9.782 10.849 Atomic orbital electron populations 1.20685 0.91867 1.02145 1.01505 1.19736 0.95479 0.93276 1.02510 1.20682 0.93373 0.97128 1.02277 1.21037 0.94076 0.97256 1.00661 1.17388 0.82819 0.93174 0.97809 1.45970 1.04068 1.47819 1.25166 1.21870 0.97165 0.93616 0.83604 1.21331 0.95402 1.36048 1.02418 0.91373 1.24803 0.95111 0.95985 0.97945 1.69939 1.13417 1.40472 1.29580 0.86545 0.81027 0.78708 0.81548 1.20729 1.21193 1.19730 1.17460 0.84629 0.80211 0.83340 1.90779 1.68006 1.50235 1.33481 1.21138 0.95847 1.02025 0.86717 1.21757 0.93562 0.96619 0.97690 1.21682 0.94484 0.96981 0.98621 1.21905 1.01551 0.97804 0.91871 1.22685 0.82674 0.99831 1.02191 1.43373 1.06317 1.19865 1.09134 1.97377 1.56314 1.77747 1.19627 1.21105 0.93791 0.97633 0.98979 1.20742 0.93529 0.97147 1.02246 0.91889 0.92026 0.92100 0.86600 0.86567 0.97821 0.83581 0.93056 0.81822 0.82732 0.81931 0.79738 0.85544 0.86421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.38 10.01 36.01 0.36 -1.01 16 2 C -0.11 -1.90 5.88 -104.59 -0.62 -2.52 16 3 C -0.12 -2.15 9.69 -39.61 -0.38 -2.53 16 4 C -0.11 -2.42 8.95 -39.38 -0.35 -2.77 16 5 C 0.18 4.22 3.75 -83.72 -0.31 3.91 16 6 N -0.51 -12.45 2.77 -115.76 -0.32 -12.77 16 7 C 0.15 4.18 4.64 -5.19 -0.02 4.16 16 8 C -0.51 -14.94 7.99 -34.44 -0.28 -15.22 16 9 H 0.07 1.99 5.31 -52.49 -0.28 1.71 16 10 C 0.06 1.84 5.46 -17.82 -0.10 1.74 16 11 N -0.89 -26.74 13.29 55.43 0.74 -26.01 16 12 Si 0.89 22.54 29.54 -169.99 -5.02 17.52 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 15 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 16 C 0.56 12.45 6.63 -12.30 -0.08 12.37 16 17 O -0.55 -12.50 16.39 5.32 0.09 -12.42 16 18 C 0.07 1.30 5.83 -82.99 -0.48 0.82 16 19 C -0.08 -0.97 9.74 -39.05 -0.38 -1.35 16 20 C -0.09 -0.79 10.16 -39.32 -0.40 -1.19 16 21 C -0.11 -0.98 10.11 -39.34 -0.40 -1.37 16 22 C 0.07 0.97 10.68 -17.54 -0.19 0.78 16 23 N -0.11 -2.11 3.01 -9.80 -0.03 -2.14 16 24 O -0.45 -11.72 15.22 -11.47 -0.17 -11.89 16 25 C -0.10 -2.07 7.72 -39.39 -0.30 -2.37 16 26 C -0.12 -2.19 9.69 -39.61 -0.38 -2.57 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 29 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 30 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 31 H 0.12 2.58 8.05 -52.49 -0.42 2.16 16 32 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 33 H 0.15 4.24 3.22 -57.70 -0.19 4.05 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.16 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.16 0.68 8.06 -52.48 -0.42 0.25 16 37 H 0.16 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.19 2.13 8.06 -52.49 -0.42 1.71 16 39 H 0.13 2.77 7.98 -52.49 -0.42 2.35 16 40 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 342.15 15.07 5.16 5.16 Total: -1.00 -38.61 342.15 -8.55 -47.16 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -4.66 Total: 4.54 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -4.32 Total: -9.15 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.39 Total: -40.92 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.09 Total: -24.31 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -38.61 -8.55 -47.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745398820.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.265 kcal (2) G-P(sol) polarization free energy of solvation -38.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds