Wall clock time and date at job start Fri Apr 10 2020 22:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38280 * 119.92587 * 2 1 4 4 C 1.38116 * 120.07188 * 179.97438 * 3 2 1 5 5 C 1.38891 * 119.92180 * 359.97438 * 4 3 2 6 6 N 1.39844 * 120.06630 * 179.97438 * 5 4 3 7 7 C 1.46504 * 119.99757 * 123.76683 * 6 5 4 8 8 C 1.50706 * 109.47075 * 346.93997 * 7 6 5 9 9 H 1.07997 * 120.00096 * 359.97438 * 8 7 6 10 10 C 1.37883 * 119.99605 * 180.02562 * 8 7 6 11 11 N 1.31507 * 120.00202 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99484 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47244 * 89.99517 * 12 10 8 14 14 H 1.48503 * 109.46933 * 209.99493 * 12 10 8 15 15 H 1.48505 * 109.47318 * 329.99743 * 12 10 8 16 16 C 1.34768 * 120.00424 * 303.76464 * 6 5 4 17 17 O 1.21553 * 119.99548 * 353.17851 * 16 6 5 18 18 C 1.47928 * 120.00319 * 173.17774 * 16 6 5 19 19 C 1.39451 * 119.74227 * 133.05873 * 18 16 6 20 20 C 1.38455 * 119.06211 * 180.02562 * 19 18 16 21 21 C 1.38728 * 118.53920 * 0.02562 * 20 19 18 22 22 C 1.38407 * 119.39517 * 0.02562 * 21 20 19 23 23 N 1.31721 * 120.90140 * 359.97438 * 22 21 20 24 24 O 1.41594 * 119.20884 * 180.02562 * 23 22 21 25 25 C 1.38888 * 119.86023 * 0.24915 * 5 4 3 26 26 C 1.38115 * 119.92572 * 359.47863 * 25 5 4 27 27 H 1.09001 * 109.46956 * 90.00235 * 1 2 3 28 28 H 1.08998 * 109.47426 * 210.00164 * 1 2 3 29 29 H 1.09001 * 109.47203 * 330.00542 * 1 2 3 30 30 H 1.07994 * 119.96541 * 359.97253 * 3 2 1 31 31 H 1.07994 * 120.03387 * 180.02562 * 4 3 2 32 32 H 1.08995 * 109.46937 * 106.94125 * 7 6 5 33 33 H 1.08995 * 109.46878 * 226.94247 * 7 6 5 34 34 H 0.96996 * 120.00100 * 180.02562 * 11 10 8 35 35 H 1.07990 * 120.46711 * 0.04856 * 19 18 16 36 36 H 1.08007 * 120.73073 * 180.27338 * 20 19 18 37 37 H 1.07999 * 120.30474 * 179.97438 * 21 20 19 38 38 H 1.07998 * 119.54551 * 180.02562 * 22 21 20 39 39 H 1.08001 * 120.04052 * 179.74878 * 25 5 4 40 40 H 1.07989 * 119.96305 * 180.27437 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2020 0.0005 5 6 4.2739 0.0000 0.0016 6 7 5.6723 0.0000 0.0016 7 6 6.4048 -0.7043 1.0570 8 6 5.4573 -1.0628 2.1727 9 1 4.4140 -0.7927 2.1028 10 6 5.9227 -1.7348 3.2831 11 7 7.1932 -2.0632 3.3684 12 14 4.7483 -2.1785 4.6663 13 1 4.1629 -3.5186 4.4079 14 1 5.4868 -2.2009 5.9545 15 1 3.6616 -1.1688 4.7362 16 6 6.3463 0.6478 -0.9692 17 8 5.7449 1.1260 -1.9111 18 6 7.8177 0.7769 -0.8885 19 6 8.5994 0.4946 -2.0083 20 6 9.9753 0.6196 -1.9168 21 6 10.5254 1.0223 -0.7086 22 6 9.6908 1.2854 0.3637 23 7 8.3845 1.1590 0.2512 24 8 7.5643 1.4380 1.3711 25 6 3.5780 -1.2020 -0.0031 26 6 2.1968 -1.1985 0.0021 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3634 -0.8899 0.5138 29 1 -0.3634 0.8900 0.5137 30 1 1.6551 2.1327 -0.0004 31 1 4.1162 2.1383 0.0010 32 1 6.8458 -1.6135 0.6485 33 1 7.1940 -0.0596 1.4437 34 1 7.5205 -2.5362 4.1494 35 1 8.1381 0.1833 -2.9337 36 1 10.6061 0.4121 -2.7686 37 1 11.5951 1.1287 -0.6055 38 1 10.1164 1.5994 1.3053 39 1 4.1162 -2.1383 -0.0064 40 1 1.6551 -2.1327 0.0029 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000745398820.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:36 Heat of formation + Delta-G solvation = 65.908975 kcal Electronic energy + Delta-G solvation = -26064.800317 eV Core-core repulsion = 22427.247149 eV Total energy + Delta-G solvation = -3637.553168 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.69137 -41.14589 -39.47683 -37.14144 -35.62424 -34.62250 -33.36910 -32.34512 -31.91896 -31.27037 -29.27173 -27.82347 -25.86662 -25.12244 -24.71189 -23.57660 -22.84574 -21.09003 -19.31925 -18.82136 -18.40322 -17.76565 -17.56667 -16.78290 -16.69164 -16.54131 -16.31774 -15.94231 -15.78191 -15.39003 -15.18794 -14.67870 -14.46241 -14.35746 -14.15235 -13.98081 -13.40484 -13.08668 -12.95358 -12.88026 -12.84335 -12.74604 -12.48073 -12.12371 -12.07811 -11.92467 -11.51770 -11.20247 -10.79456 -10.66756 -10.55598 -10.31606 -9.82698 -9.28938 -8.72355 -8.21474 -6.22060 -0.71324 -0.29268 0.35899 0.49215 1.16404 1.31358 1.34678 1.45476 1.68256 1.97124 2.24139 2.38383 2.82363 3.13020 3.19929 3.51447 3.61545 3.70935 3.90713 3.93427 4.04965 4.10049 4.41207 4.49042 4.50124 4.59180 4.80329 4.83422 4.85279 4.91649 5.00513 5.07923 5.11193 5.16576 5.37535 5.50708 5.55293 5.66582 5.67008 5.67901 5.77929 5.93771 6.12109 6.20396 6.53688 6.79034 7.02177 7.37968 8.91364 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.011073 B = 0.006341 C = 0.004378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.040930 B = 4414.991108 C = 6393.952773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.101 4.101 3 C -0.113 4.113 4 C -0.136 4.136 5 C 0.141 3.859 6 N -0.522 5.522 7 C 0.168 3.832 8 C -0.528 4.528 9 H 0.059 0.941 10 C 0.010 3.990 11 N -0.925 5.925 12 Si 0.959 3.041 13 H -0.265 1.265 14 H -0.277 1.277 15 H -0.276 1.276 16 C 0.548 3.452 17 O -0.565 6.565 18 C 0.031 3.969 19 C -0.074 4.074 20 C -0.048 4.048 21 C -0.075 4.075 22 C 0.061 3.939 23 N -0.133 5.133 24 O -0.552 6.552 25 C -0.117 4.117 26 C -0.115 4.115 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.149 0.851 31 H 0.095 0.905 32 H -0.031 1.031 33 H 0.144 0.856 34 H 0.263 0.737 35 H 0.183 0.817 36 H 0.223 0.777 37 H 0.229 0.771 38 H 0.195 0.805 39 H 0.109 0.891 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.800 3.486 -12.821 14.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.101 4.101 3 C -0.131 4.131 4 C -0.156 4.156 5 C 0.050 3.950 6 N -0.244 5.244 7 C 0.051 3.949 8 C -0.566 4.566 9 H 0.077 0.923 10 C -0.188 4.188 11 N -0.565 5.565 12 Si 0.784 3.216 13 H -0.190 1.190 14 H -0.202 1.202 15 H -0.201 1.201 16 C 0.336 3.664 17 O -0.446 6.446 18 C -0.096 4.096 19 C -0.094 4.094 20 C -0.073 4.073 21 C -0.093 4.093 22 C -0.086 4.086 23 N 0.185 4.815 24 O -0.605 6.605 25 C -0.137 4.137 26 C -0.133 4.133 27 H 0.103 0.897 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.166 0.834 31 H 0.113 0.887 32 H -0.013 1.013 33 H 0.159 0.841 34 H 0.072 0.928 35 H 0.201 0.799 36 H 0.239 0.761 37 H 0.245 0.755 38 H 0.212 0.788 39 H 0.127 0.873 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.344 3.712 -12.800 14.018 hybrid contribution -0.475 -0.306 1.503 1.606 sum 3.869 3.406 -11.297 12.418 Atomic orbital electron populations 1.20773 0.87829 1.03771 1.03400 1.20281 0.98188 0.91982 0.99686 1.21083 0.91931 0.99372 1.00747 1.21084 0.95822 0.95928 1.02741 1.17804 0.82823 0.94447 0.99930 1.45905 1.04724 1.48415 1.25366 1.21546 0.97449 0.92208 0.83735 1.21574 0.95359 1.36223 1.03494 0.92270 1.25667 0.96905 0.95950 1.00292 1.70054 1.14930 1.41153 1.30360 0.85535 0.78760 0.78786 0.78527 1.18984 1.20224 1.20129 1.18151 0.86836 0.79000 0.82398 1.90709 1.69397 1.50621 1.33853 1.21149 0.94419 1.05264 0.88737 1.22259 0.95467 0.95541 0.96131 1.22542 0.92601 0.91865 1.00300 1.22760 1.03664 0.93295 0.89571 1.23506 0.81132 0.99028 1.04903 1.43370 1.07683 1.22202 1.08277 1.97318 1.58493 1.82569 1.22103 1.21136 0.95442 0.96314 1.00829 1.21158 0.92198 0.99330 1.00636 0.89651 0.90463 0.90496 0.83357 0.88719 1.01345 0.84150 0.92795 0.79941 0.76075 0.75458 0.78776 0.87323 0.83148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.28 10.01 71.24 0.71 -1.56 16 2 C -0.10 -3.38 5.88 -19.84 -0.12 -3.50 16 3 C -0.11 -4.23 9.69 22.25 0.22 -4.01 16 4 C -0.14 -6.43 8.95 22.40 0.20 -6.23 16 5 C 0.14 7.24 3.75 38.17 0.14 7.38 16 6 N -0.52 -28.32 2.77 -638.45 -1.77 -30.09 16 7 C 0.17 10.08 4.64 85.63 0.40 10.48 16 8 C -0.53 -33.15 7.99 25.60 0.20 -32.94 16 9 H 0.06 3.73 5.31 -2.91 -0.02 3.71 16 10 C 0.01 0.62 5.46 84.66 0.46 1.08 16 11 N -0.92 -58.11 13.29 21.45 0.28 -57.82 16 12 Si 0.96 47.98 29.54 68.60 2.03 50.00 16 13 H -0.26 -12.44 7.11 99.48 0.71 -11.73 16 14 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 15 H -0.28 -13.85 7.11 99.48 0.71 -13.14 16 16 C 0.55 26.85 6.63 86.81 0.58 27.42 16 17 O -0.56 -28.02 16.39 -3.88 -0.06 -28.09 16 18 C 0.03 1.22 5.83 41.84 0.24 1.46 16 19 C -0.07 -1.75 9.74 22.61 0.22 -1.53 16 20 C -0.05 -0.54 10.16 22.44 0.23 -0.31 16 21 C -0.08 -0.90 10.11 22.43 0.23 -0.67 16 22 C 0.06 1.62 10.68 84.75 0.91 2.52 16 23 N -0.13 -5.50 3.01 -184.91 -0.56 -6.06 16 24 O -0.55 -31.97 15.22 -38.77 -0.59 -32.56 16 25 C -0.12 -5.46 7.72 22.40 0.17 -5.28 16 26 C -0.11 -4.26 9.69 22.25 0.22 -4.05 16 27 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.08 1.54 8.08 -2.39 -0.02 1.52 16 29 H 0.08 1.53 8.08 -2.39 -0.02 1.51 16 30 H 0.15 4.44 8.06 -2.91 -0.02 4.42 16 31 H 0.09 4.72 8.05 -2.91 -0.02 4.69 16 32 H -0.03 -1.97 8.14 -2.39 -0.02 -1.99 16 33 H 0.14 9.04 3.22 -93.71 -0.30 8.73 16 34 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 35 H 0.18 3.52 8.06 -2.92 -0.02 3.49 16 36 H 0.22 -0.20 8.06 -2.91 -0.02 -0.22 16 37 H 0.23 -0.06 8.06 -2.91 -0.02 -0.09 16 38 H 0.20 4.51 8.06 -2.91 -0.02 4.49 16 39 H 0.11 5.25 7.98 -2.91 -0.02 5.23 16 40 H 0.15 4.47 8.06 -2.92 -0.02 4.44 16 Total: -1.00 -100.76 342.15 5.11 -95.65 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.77 Total: 18.71 kcal Atomic # 6 Polarization: -14.75 SS G_CDS: 5.01 Total: -9.75 kcal Atomic # 7 Polarization: -91.93 SS G_CDS: -2.04 Total: -93.97 kcal Atomic # 8 Polarization: -60.00 SS G_CDS: -0.65 Total: -60.65 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 2.03 Total: 50.00 kcal Total: -100.76 5.11 -95.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000745398820.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.562 kcal (2) G-P(sol) polarization free energy of solvation -100.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds