Wall clock time and date at job start Fri Apr 10 2020 22:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35283 * 119.65430 * 2 1 4 4 C 1.41321 * 119.25475 * 179.97438 * 3 2 1 5 5 N 1.34365 * 120.67553 * 179.97438 * 4 3 2 6 6 C 1.33185 * 120.00110 * 355.19943 * 5 4 3 7 7 O 1.22012 * 120.00134 * 64.69250 * 6 5 4 8 8 C 1.47942 * 120.00245 * 244.69812 * 6 5 4 9 9 C 1.39499 * 120.17739 * 359.97390 * 8 6 5 10 10 C 1.37893 * 119.93181 * 180.02562 * 9 8 6 11 11 C 1.38538 * 120.30445 * 0.02562 * 10 9 8 12 12 C 1.38040 * 120.36200 * 0.02562 * 11 10 9 13 13 C 1.38821 * 120.06340 * 359.97438 * 12 11 10 14 14 O 1.35564 * 120.15368 * 180.02562 * 13 12 11 15 15 C 1.34816 * 117.00103 * 354.48097 * 14 13 12 16 16 H 1.08007 * 119.99690 * 5.06226 * 15 14 13 17 17 C 1.38690 * 120.00522 * 185.05431 * 15 14 13 18 18 N 1.31528 * 119.99531 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00134 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47412 * 60.00124 * 19 17 15 21 21 H 1.48496 * 109.46966 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46996 * 300.00100 * 19 17 15 23 23 C 1.41319 * 118.65448 * 0.25202 * 4 3 2 24 24 C 1.50697 * 120.37811 * 179.72623 * 23 4 3 25 25 C 1.35287 * 119.25031 * 359.47039 * 23 4 3 26 26 N 1.35494 * 119.65525 * 179.97438 * 2 1 3 27 27 H 0.97004 * 119.27156 * 0.02562 * 26 2 1 28 28 H 1.09000 * 109.47211 * 89.99888 * 1 2 3 29 29 H 1.08992 * 109.46950 * 209.99970 * 1 2 3 30 30 H 1.09002 * 109.46677 * 330.00144 * 1 2 3 31 31 H 1.07998 * 120.37742 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.03613 * 0.02562 * 9 8 6 33 33 H 1.08001 * 119.85072 * 180.02562 * 10 9 8 34 34 H 1.07995 * 119.81911 * 180.27966 * 11 10 9 35 35 H 1.08006 * 119.96738 * 179.97438 * 12 11 10 36 36 H 0.96998 * 119.99687 * 180.02562 * 18 17 15 37 37 H 1.09001 * 109.47458 * 89.99907 * 24 23 4 38 38 H 1.09001 * 109.47019 * 210.00150 * 24 23 4 39 39 H 1.09002 * 109.46884 * 329.99759 * 24 23 4 40 40 H 1.08001 * 119.65708 * 180.25148 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1763 1.1756 0.0000 4 6 3.5895 1.1658 0.0006 5 7 4.2831 2.3166 0.0000 6 6 3.6424 3.4802 -0.0975 7 8 2.8855 3.8362 0.7907 8 6 3.8485 4.3410 -1.2829 9 6 4.7134 3.9379 -2.3005 10 6 4.9021 4.7444 -3.4029 11 6 4.2367 5.9552 -3.5053 12 6 3.3788 6.3667 -2.5052 13 6 3.1776 5.5667 -1.3887 14 8 2.3352 5.9688 -0.4057 15 6 1.8113 7.2060 -0.5167 16 1 2.0029 7.7963 -1.4007 17 6 1.0261 7.7209 0.5041 18 7 0.7931 7.0022 1.5807 19 14 0.2997 9.4349 0.3499 20 1 -0.5808 9.4938 -0.8444 21 1 -0.4941 9.7472 1.5654 22 1 1.3962 10.4261 0.2058 23 6 4.2585 -0.0790 -0.0044 24 6 5.7644 -0.1348 -0.0102 25 6 3.5318 -1.2201 0.0015 26 7 2.1774 -1.1775 0.0005 27 1 1.6767 -2.0083 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6369 2.1112 0.0004 32 1 5.2346 2.9950 -2.2250 33 1 5.5717 4.4308 -4.1901 34 1 4.3868 6.5787 -4.3743 35 1 2.8637 7.3121 -2.5914 36 1 0.2437 7.3621 2.2945 37 1 6.1315 -0.1502 1.0161 38 1 6.0926 -1.0367 -0.5270 39 1 6.1585 0.7421 -0.5239 40 1 4.0363 -2.1750 0.0019 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747112703.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:39 Heat of formation + Delta-G solvation = 24.858215 kcal Electronic energy + Delta-G solvation = -25217.162069 eV Core-core repulsion = 21577.828806 eV Total energy + Delta-G solvation = -3639.333262 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.81722 -39.22229 -37.77218 -36.15240 -35.04591 -33.52460 -32.23014 -31.30877 -30.16197 -28.76535 -28.66699 -25.92475 -25.30163 -24.20728 -22.46886 -21.73378 -21.03510 -19.00553 -18.15313 -17.85203 -17.11612 -16.62607 -16.03288 -15.13341 -14.82228 -14.77242 -14.45372 -14.19406 -13.77103 -13.55625 -13.40194 -13.34750 -13.05164 -13.03380 -12.69831 -12.45168 -12.39521 -12.31020 -12.05469 -11.60998 -11.40284 -11.19819 -11.05124 -10.77848 -10.67698 -10.62512 -10.38365 -9.63170 -9.26709 -9.20141 -8.77053 -8.23144 -8.05282 -7.16126 -7.08239 -6.33989 -3.93600 1.13187 1.38449 1.91139 2.51230 2.82858 3.16904 3.19930 3.21544 3.43366 3.90210 4.02108 4.37209 4.51661 4.72810 4.91431 5.07796 5.14346 5.17700 5.22741 5.27950 5.38721 5.61904 5.68552 5.74676 5.77458 5.86017 5.88634 5.96151 6.07268 6.19458 6.34186 6.37431 6.59405 6.77681 6.83011 6.90108 6.95285 7.10314 7.23216 7.31114 7.42635 7.53823 7.89731 8.05347 8.44360 9.05961 9.25274 9.81379 10.80380 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.013856 B = 0.004342 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.277740 B = 6447.004138 C = 7716.608289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.149 3.851 3 C -0.240 4.240 4 C 0.297 3.703 5 N -0.611 5.611 6 C 0.524 3.476 7 O -0.486 6.486 8 C -0.223 4.223 9 C -0.019 4.019 10 C -0.237 4.237 11 C -0.052 4.052 12 C -0.245 4.245 13 C 0.186 3.814 14 O -0.129 6.129 15 C -0.402 4.402 16 H 0.092 0.908 17 C 0.044 3.956 18 N -0.837 5.837 19 Si 0.940 3.060 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.269 1.269 23 C -0.161 4.161 24 C -0.086 4.086 25 C 0.110 3.890 26 N -0.592 5.592 27 H 0.414 0.586 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.095 0.905 31 H 0.151 0.849 32 H 0.119 0.881 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.129 0.871 36 H 0.270 0.730 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.081 0.919 40 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.780 -19.330 -6.013 20.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.038 3.962 3 C -0.267 4.267 4 C 0.134 3.866 5 N -0.345 5.345 6 C 0.314 3.686 7 O -0.362 6.362 8 C -0.227 4.227 9 C -0.037 4.037 10 C -0.256 4.256 11 C -0.070 4.070 12 C -0.264 4.264 13 C 0.127 3.873 14 O -0.028 6.028 15 C -0.478 4.478 16 H 0.109 0.891 17 C -0.163 4.163 18 N -0.469 5.469 19 Si 0.764 3.236 20 H -0.195 1.195 21 H -0.202 1.202 22 H -0.194 1.194 23 C -0.170 4.170 24 C -0.144 4.144 25 C -0.019 4.019 26 N -0.198 5.198 27 H 0.249 0.751 28 H 0.104 0.896 29 H 0.091 0.909 30 H 0.113 0.887 31 H 0.168 0.832 32 H 0.137 0.863 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.147 0.853 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 1.974 -18.659 -5.003 19.418 hybrid contribution -1.121 0.797 -0.211 1.391 sum 0.853 -17.862 -5.214 18.627 Atomic orbital electron populations 1.21014 0.88152 1.04692 1.04044 1.20229 0.94548 0.85461 0.95935 1.21741 0.95331 0.98064 1.11539 1.18590 0.89193 0.91370 0.87433 1.68677 1.36942 0.98352 1.30523 1.19399 0.76926 0.86405 0.85886 1.90979 1.30614 1.76329 1.38268 1.19181 1.07530 0.97279 0.98736 1.20878 0.93478 0.97802 0.91572 1.20528 1.07221 0.97503 1.00347 1.20873 0.94182 0.95202 0.96773 1.21113 1.06183 1.02911 0.96199 1.19403 0.87942 0.91554 0.88385 1.84183 1.48459 1.31381 1.38804 1.21430 1.30727 0.90285 1.05393 0.89084 1.25353 0.96839 0.99682 0.94466 1.70134 1.34182 1.36559 1.06067 0.85820 0.79100 0.80567 0.78135 1.19473 1.20241 1.19418 1.19306 0.97322 0.90123 1.10225 1.20378 0.89274 1.02552 1.02153 1.21483 0.82263 0.99780 0.98329 1.40848 1.05914 1.08277 1.64723 0.75089 0.89550 0.90883 0.88663 0.83175 0.86264 0.87468 0.87385 0.85288 0.92011 0.91743 0.92529 0.90044 0.81766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.01 10.07 36.01 0.36 -0.65 16 2 C 0.15 1.68 6.80 -82.03 -0.56 1.13 16 3 C -0.24 -4.10 8.65 -39.46 -0.34 -4.44 16 4 C 0.30 5.34 6.58 -84.42 -0.56 4.78 16 5 N -0.61 -13.44 8.69 -11.01 -0.10 -13.54 16 6 C 0.52 13.69 6.14 -12.99 -0.08 13.61 16 7 O -0.49 -14.80 14.63 -16.93 -0.25 -15.05 16 8 C -0.22 -5.64 5.89 -104.74 -0.62 -6.26 16 9 C -0.02 -0.40 9.58 -39.24 -0.38 -0.77 16 10 C -0.24 -4.54 10.03 -39.60 -0.40 -4.94 16 11 C -0.05 -1.03 10.03 -39.54 -0.40 -1.42 16 12 C -0.24 -5.78 9.16 -39.44 -0.36 -6.14 16 13 C 0.19 5.08 6.66 -38.66 -0.26 4.82 16 14 O -0.13 -4.07 7.83 -21.18 -0.17 -4.23 16 15 C -0.40 -11.99 9.49 30.90 0.29 -11.70 16 16 H 0.09 2.47 5.21 -52.48 -0.27 2.20 16 17 C 0.04 1.27 5.49 -17.51 -0.10 1.17 16 18 N -0.84 -26.20 13.67 55.48 0.76 -25.44 16 19 Si 0.94 21.36 29.55 -169.99 -5.02 16.33 16 20 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 23 C -0.16 -2.05 5.89 -104.50 -0.62 -2.66 16 24 C -0.09 -0.95 9.81 36.00 0.35 -0.60 16 25 C 0.11 0.89 10.82 -16.98 -0.18 0.71 16 26 N -0.59 -4.42 5.24 -9.30 -0.05 -4.46 16 27 H 0.41 1.31 8.77 -40.82 -0.36 0.95 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.97 8.07 -51.93 -0.42 0.55 16 31 H 0.15 3.18 6.35 -52.49 -0.33 2.85 16 32 H 0.12 2.27 7.55 -52.49 -0.40 1.88 16 33 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.13 2.96 5.64 -52.48 -0.30 2.67 16 36 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 39 H 0.08 1.08 7.57 -51.93 -0.39 0.69 16 40 H 0.17 0.58 8.06 -52.49 -0.42 0.15 16 LS Contribution 346.17 15.07 5.22 5.22 Total: -1.00 -40.94 346.17 -7.99 -48.93 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -4.56 Total: 5.60 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -3.83 Total: -13.37 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: 0.61 Total: -43.44 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.41 Total: -19.29 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -40.94 -7.99 -48.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747112703.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.791 kcal (2) G-P(sol) polarization free energy of solvation -40.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds