Wall clock time and date at job start Fri Apr 10 2020 22:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35283 * 119.65430 * 2 1 4 4 C 1.41321 * 119.25475 * 179.97438 * 3 2 1 5 5 N 1.34365 * 120.67553 * 179.97438 * 4 3 2 6 6 C 1.33185 * 120.00110 * 355.19943 * 5 4 3 7 7 O 1.22012 * 120.00134 * 64.69250 * 6 5 4 8 8 C 1.47942 * 120.00245 * 244.69812 * 6 5 4 9 9 C 1.39499 * 120.17739 * 359.97390 * 8 6 5 10 10 C 1.37893 * 119.93181 * 180.02562 * 9 8 6 11 11 C 1.38538 * 120.30445 * 0.02562 * 10 9 8 12 12 C 1.38040 * 120.36200 * 0.02562 * 11 10 9 13 13 C 1.38821 * 120.06340 * 359.97438 * 12 11 10 14 14 O 1.35564 * 120.15368 * 180.02562 * 13 12 11 15 15 C 1.34816 * 117.00103 * 354.48097 * 14 13 12 16 16 H 1.08007 * 119.99690 * 5.06226 * 15 14 13 17 17 C 1.38690 * 120.00522 * 185.05431 * 15 14 13 18 18 N 1.31528 * 119.99531 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00134 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47412 * 60.00124 * 19 17 15 21 21 H 1.48496 * 109.46966 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.46996 * 300.00100 * 19 17 15 23 23 C 1.41319 * 118.65448 * 0.25202 * 4 3 2 24 24 C 1.50697 * 120.37811 * 179.72623 * 23 4 3 25 25 C 1.35287 * 119.25031 * 359.47039 * 23 4 3 26 26 N 1.35494 * 119.65525 * 179.97438 * 2 1 3 27 27 H 0.97004 * 119.27156 * 0.02562 * 26 2 1 28 28 H 1.09000 * 109.47211 * 89.99888 * 1 2 3 29 29 H 1.08992 * 109.46950 * 209.99970 * 1 2 3 30 30 H 1.09002 * 109.46677 * 330.00144 * 1 2 3 31 31 H 1.07998 * 120.37742 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.03613 * 0.02562 * 9 8 6 33 33 H 1.08001 * 119.85072 * 180.02562 * 10 9 8 34 34 H 1.07995 * 119.81911 * 180.27966 * 11 10 9 35 35 H 1.08006 * 119.96738 * 179.97438 * 12 11 10 36 36 H 0.96998 * 119.99687 * 180.02562 * 18 17 15 37 37 H 1.09001 * 109.47458 * 89.99907 * 24 23 4 38 38 H 1.09001 * 109.47019 * 210.00150 * 24 23 4 39 39 H 1.09002 * 109.46884 * 329.99759 * 24 23 4 40 40 H 1.08001 * 119.65708 * 180.25148 * 25 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1763 1.1756 0.0000 4 6 3.5895 1.1658 0.0006 5 7 4.2831 2.3166 0.0000 6 6 3.6424 3.4802 -0.0975 7 8 2.8855 3.8362 0.7907 8 6 3.8485 4.3410 -1.2829 9 6 4.7134 3.9379 -2.3005 10 6 4.9021 4.7444 -3.4029 11 6 4.2367 5.9552 -3.5053 12 6 3.3788 6.3667 -2.5052 13 6 3.1776 5.5667 -1.3887 14 8 2.3352 5.9688 -0.4057 15 6 1.8113 7.2060 -0.5167 16 1 2.0029 7.7963 -1.4007 17 6 1.0261 7.7209 0.5041 18 7 0.7931 7.0022 1.5807 19 14 0.2997 9.4349 0.3499 20 1 -0.5808 9.4938 -0.8444 21 1 -0.4941 9.7472 1.5654 22 1 1.3962 10.4261 0.2058 23 6 4.2585 -0.0790 -0.0044 24 6 5.7644 -0.1348 -0.0102 25 6 3.5318 -1.2201 0.0015 26 7 2.1774 -1.1775 0.0005 27 1 1.6767 -2.0083 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6369 2.1112 0.0004 32 1 5.2346 2.9950 -2.2250 33 1 5.5717 4.4308 -4.1901 34 1 4.3868 6.5787 -4.3743 35 1 2.8637 7.3121 -2.5914 36 1 0.2437 7.3621 2.2945 37 1 6.1315 -0.1502 1.0161 38 1 6.0926 -1.0367 -0.5270 39 1 6.1585 0.7421 -0.5239 40 1 4.0363 -2.1750 0.0019 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747112703.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:39 Heat of formation + Delta-G solvation = -7.466755 kcal Electronic energy + Delta-G solvation = -25218.563785 eV Core-core repulsion = 21577.828806 eV Total energy + Delta-G solvation = -3640.734978 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.94824 -41.03300 -39.54393 -38.02984 -36.32528 -34.63177 -34.35096 -32.71930 -31.63786 -30.58139 -29.82773 -27.42475 -26.76857 -25.65125 -23.96187 -23.16400 -22.61017 -20.62297 -19.85861 -19.08324 -18.77915 -17.90509 -17.61830 -16.82028 -16.30343 -16.08733 -16.04291 -15.94078 -15.57026 -15.32005 -14.93808 -14.70241 -14.29202 -14.18016 -14.06623 -13.88924 -13.56717 -13.30686 -13.21770 -13.11587 -12.98021 -12.72692 -12.51937 -12.42800 -12.35286 -12.16561 -12.07380 -11.51046 -11.06940 -10.85011 -10.16121 -9.97067 -9.81464 -9.07169 -8.46530 -8.40173 -6.18629 -0.11785 0.22102 0.33868 0.70155 1.28505 1.43226 1.47986 1.86468 1.94433 2.14496 2.56516 2.84809 3.17200 3.41690 3.47596 3.52237 3.87710 4.00197 4.08378 4.11318 4.19227 4.29321 4.46681 4.57553 4.57774 4.65198 4.70770 4.85314 4.98000 5.03074 5.03505 5.04388 5.09513 5.16378 5.26531 5.54516 5.57021 5.64253 5.65986 5.79639 5.86079 5.98596 6.17230 6.34840 6.87792 6.91708 7.57304 7.79527 8.74607 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.013856 B = 0.004342 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.277740 B = 6447.004138 C = 7716.608289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.199 3.801 3 C -0.307 4.307 4 C 0.293 3.707 5 N -0.671 5.671 6 C 0.526 3.474 7 O -0.566 6.566 8 C -0.251 4.251 9 C -0.017 4.017 10 C -0.207 4.207 11 C -0.038 4.038 12 C -0.260 4.260 13 C 0.144 3.856 14 O -0.192 6.192 15 C -0.432 4.432 16 H 0.107 0.893 17 C -0.025 4.025 18 N -0.909 5.909 19 Si 1.028 2.972 20 H -0.250 1.250 21 H -0.270 1.270 22 H -0.255 1.255 23 C -0.201 4.201 24 C -0.080 4.080 25 C 0.165 3.835 26 N -0.553 5.553 27 H 0.448 0.552 28 H 0.107 0.893 29 H 0.123 0.877 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.140 0.860 33 H 0.163 0.837 34 H 0.161 0.839 35 H 0.128 0.872 36 H 0.271 0.729 37 H 0.059 0.941 38 H 0.104 0.896 39 H 0.047 0.953 40 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.661 -23.990 -9.424 25.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.084 3.916 3 C -0.335 4.335 4 C 0.139 3.861 5 N -0.411 5.411 6 C 0.318 3.682 7 O -0.447 6.447 8 C -0.255 4.255 9 C -0.036 4.036 10 C -0.225 4.225 11 C -0.056 4.056 12 C -0.279 4.279 13 C 0.089 3.911 14 O -0.094 6.094 15 C -0.508 4.508 16 H 0.124 0.876 17 C -0.223 4.223 18 N -0.545 5.545 19 Si 0.845 3.155 20 H -0.174 1.174 21 H -0.195 1.195 22 H -0.179 1.179 23 C -0.209 4.209 24 C -0.137 4.137 25 C 0.034 3.966 26 N -0.158 5.158 27 H 0.290 0.710 28 H 0.126 0.874 29 H 0.141 0.859 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.157 0.843 33 H 0.180 0.820 34 H 0.178 0.822 35 H 0.146 0.854 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.123 0.877 39 H 0.067 0.933 40 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 2.869 -23.479 -8.489 25.130 hybrid contribution -1.297 1.573 0.636 2.136 sum 1.571 -21.906 -7.852 23.324 Atomic orbital electron populations 1.21184 0.85540 1.05759 1.05681 1.20407 0.96032 0.84938 0.90203 1.21384 0.95630 0.98253 1.18200 1.19315 0.89745 0.92313 0.84713 1.68437 1.35356 0.97942 1.39378 1.19872 0.75275 0.88148 0.84904 1.90896 1.34874 1.78045 1.40890 1.19790 1.08356 0.97101 1.00289 1.21189 0.92319 0.99006 0.91061 1.21191 1.05517 0.95905 0.99876 1.21427 0.91675 0.95774 0.96718 1.21302 1.07579 1.02672 0.96326 1.20158 0.88605 0.93129 0.89206 1.84202 1.51373 1.32484 1.41387 1.22071 1.31458 0.90737 1.06504 0.87617 1.26881 0.96917 1.05010 0.93506 1.70360 1.36720 1.39622 1.07772 0.84564 0.78500 0.73569 0.78872 1.17399 1.19486 1.17902 1.19580 0.98833 0.89064 1.13392 1.20344 0.87916 1.03326 1.02106 1.22493 0.81700 1.00885 0.91516 1.41160 1.06547 1.08331 1.59763 0.71005 0.87418 0.85853 0.91560 0.89214 0.84260 0.81964 0.82182 0.85450 0.92015 0.92240 0.87747 0.93350 0.74387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.81 10.07 71.24 0.72 -1.10 16 2 C 0.20 4.16 6.80 41.31 0.28 4.44 16 3 C -0.31 -11.50 8.65 22.35 0.19 -11.31 16 4 C 0.29 11.24 6.58 40.27 0.27 11.51 16 5 N -0.67 -32.82 8.69 -307.72 -2.68 -35.49 16 6 C 0.53 31.25 6.14 87.06 0.53 31.78 16 7 O -0.57 -40.02 14.63 15.52 0.23 -39.79 16 8 C -0.25 -13.96 5.89 -19.94 -0.12 -14.08 16 9 C -0.02 -0.75 9.58 22.49 0.22 -0.54 16 10 C -0.21 -7.34 10.03 22.26 0.22 -7.12 16 11 C -0.04 -1.43 10.03 22.29 0.22 -1.20 16 12 C -0.26 -12.80 9.16 22.36 0.20 -12.59 16 13 C 0.14 8.65 6.66 22.87 0.15 8.80 16 14 O -0.19 -13.57 7.83 0.32 0.00 -13.57 16 15 C -0.43 -28.33 9.49 67.93 0.64 -27.69 16 16 H 0.11 6.21 5.21 -2.91 -0.02 6.20 16 17 C -0.02 -1.55 5.49 84.85 0.47 -1.09 16 18 N -0.91 -63.08 13.67 21.62 0.30 -62.79 16 19 Si 1.03 46.81 29.55 68.60 2.03 48.84 16 20 H -0.25 -10.44 7.11 99.48 0.71 -9.73 16 21 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 22 H -0.25 -10.85 7.11 99.48 0.71 -10.15 16 23 C -0.20 -4.68 5.89 -19.79 -0.12 -4.80 16 24 C -0.08 -1.59 9.81 71.23 0.70 -0.89 16 25 C 0.17 1.61 10.82 83.45 0.90 2.51 16 26 N -0.55 -4.92 5.24 -183.34 -0.96 -5.88 16 27 H 0.45 -1.00 8.77 -92.71 -0.81 -1.81 16 28 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 1.45 8.07 -2.39 -0.02 1.43 16 31 H 0.09 4.53 6.35 -2.91 -0.02 4.51 16 32 H 0.14 5.39 7.55 -2.91 -0.02 5.36 16 33 H 0.16 4.11 8.06 -2.91 -0.02 4.09 16 34 H 0.16 4.40 8.06 -2.91 -0.02 4.38 16 35 H 0.13 6.16 5.64 -2.91 -0.02 6.14 16 36 H 0.27 17.13 8.31 -92.71 -0.77 16.36 16 37 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.10 1.02 8.09 -2.39 -0.02 1.00 16 39 H 0.05 1.30 7.57 -2.39 -0.02 1.28 16 40 H 0.24 -0.86 8.06 -2.91 -0.02 -0.88 16 Total: -1.00 -116.58 346.17 4.69 -111.89 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 0.28 Total: 20.14 kcal Atomic # 6 Polarization: -28.84 SS G_CDS: 5.49 Total: -23.35 kcal Atomic # 7 Polarization: -100.82 SS G_CDS: -3.34 Total: -104.16 kcal Atomic # 8 Polarization: -53.59 SS G_CDS: 0.23 Total: -53.36 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -116.58 4.69 -111.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747112703.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.423 kcal (2) G-P(sol) polarization free energy of solvation -116.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -111.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds