Wall clock time and date at job start Fri Apr 10 2020 22:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31776 * 119.58254 * 2 1 4 4 C 1.31942 * 122.23345 * 180.02562 * 3 2 1 5 5 C 1.37871 * 121.09874 * 359.97437 * 4 3 2 6 6 C 1.50701 * 120.48815 * 180.02562 * 5 4 3 7 7 O 1.42905 * 109.46922 * 0.02562 * 6 5 4 8 8 C 1.40289 * 119.02271 * 0.02562 * 5 4 3 9 9 C 1.46968 * 120.99390 * 179.97438 * 8 5 4 10 10 N 1.30711 * 119.99729 * 179.97438 * 9 8 5 11 11 C 1.35970 * 120.00061 * 179.97438 * 10 9 8 12 12 C 1.40429 * 119.92386 * 134.99859 * 11 10 9 13 13 C 1.36023 * 120.08245 * 179.70433 * 12 11 10 14 14 C 1.41092 * 119.91492 * 0.27601 * 13 12 11 15 15 C 1.40764 * 120.07455 * 180.02562 * 14 13 12 16 16 H 1.07992 * 119.99958 * 24.79838 * 15 14 13 17 17 C 1.40087 * 119.99708 * 204.79222 * 15 14 13 18 18 N 1.30760 * 120.00190 * 17.97439 * 17 15 14 19 19 Si 1.86799 * 119.99793 * 197.97042 * 17 15 14 20 20 H 1.48509 * 109.47155 * 90.00250 * 19 17 15 21 21 H 1.48507 * 109.47355 * 210.00025 * 19 17 15 22 22 H 1.48498 * 109.47427 * 330.00389 * 19 17 15 23 23 C 1.41090 * 119.84914 * 359.97438 * 14 13 12 24 24 C 1.36020 * 119.91620 * 0.02562 * 23 14 13 25 25 C 1.38689 * 119.59107 * 180.27725 * 2 1 3 26 26 O 1.35712 * 120.59235 * 0.02562 * 25 2 1 27 27 H 1.09001 * 109.47408 * 90.00488 * 1 2 3 28 28 H 1.09006 * 109.46689 * 210.00356 * 1 2 3 29 29 H 1.08998 * 109.47732 * 330.00246 * 1 2 3 30 30 H 1.07999 * 119.45371 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.47009 * 120.01559 * 6 5 4 32 32 H 1.08989 * 109.47295 * 240.01955 * 6 5 4 33 33 H 0.96707 * 113.99733 * 180.02562 * 7 6 5 34 34 H 1.08000 * 120.00208 * 359.97438 * 9 8 5 35 35 H 1.08000 * 119.96113 * 359.97438 * 12 11 10 36 36 H 1.07996 * 120.04163 * 180.29576 * 13 12 11 37 37 H 0.97004 * 119.99657 * 180.02562 * 18 17 15 38 38 H 1.08000 * 120.04494 * 180.02562 * 23 14 13 39 39 H 1.08003 * 119.96069 * 180.02562 * 24 23 14 40 40 H 0.96697 * 113.99950 * 270.24617 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1575 1.1460 0.0000 4 6 3.4755 1.2070 -0.0005 5 6 4.2415 0.0606 -0.0005 6 6 5.7460 0.1464 -0.0005 7 8 6.1449 1.5186 0.0001 8 6 3.5996 -1.1868 -0.0006 9 6 4.3736 -2.4362 -0.0011 10 7 3.7554 -3.5879 -0.0007 11 6 4.4714 -4.7438 -0.0017 12 6 4.1097 -5.7927 0.8591 13 6 4.8201 -6.9527 0.8564 14 6 5.9251 -7.0991 -0.0086 15 6 6.6622 -8.2983 -0.0145 16 1 6.1975 -9.2193 0.3048 17 6 7.9986 -8.2969 -0.4348 18 7 8.6673 -7.1743 -0.4841 19 14 8.8252 -9.8987 -0.9246 20 1 8.6280 -10.1335 -2.3777 21 1 10.2783 -9.8165 -0.6293 22 1 8.2267 -11.0198 -0.1565 23 6 6.2889 -6.0412 -0.8684 24 6 5.5740 -4.8841 -0.8603 25 6 2.1918 -1.2060 -0.0058 26 8 1.5170 -2.3834 -0.0121 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 3.9625 2.1710 -0.0009 31 1 6.1380 -0.3462 0.8893 32 1 6.1380 -0.3456 -0.8906 33 1 7.1031 1.6497 -0.0002 34 1 5.4531 -2.4027 -0.0020 35 1 3.2638 -5.6798 1.5210 36 1 4.5384 -7.7606 1.5153 37 1 9.5925 -7.1733 -0.7755 38 1 7.1339 -6.1500 -1.5321 39 1 5.8516 -4.0740 -1.5185 40 1 1.3178 -2.7273 0.8695 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747713177.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:42 Heat of formation + Delta-G solvation = -19.113087 kcal Electronic energy + Delta-G solvation = -24343.053819 eV Core-core repulsion = 20701.813817 eV Total energy + Delta-G solvation = -3641.240001 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.46284 -38.24157 -37.38882 -36.57450 -35.62922 -33.89023 -32.85130 -31.06478 -29.77157 -29.34206 -28.35508 -25.86440 -25.15496 -23.82415 -21.95625 -21.25526 -20.72712 -19.21587 -18.02843 -17.84790 -17.64189 -16.41777 -15.81447 -15.69557 -15.37532 -15.16894 -14.83236 -14.24644 -14.15203 -13.87765 -13.53356 -13.26749 -13.01969 -12.39819 -12.37454 -12.33857 -12.28991 -12.08836 -11.95701 -11.87551 -11.39518 -11.12581 -10.99143 -10.88473 -10.82357 -10.43270 -10.15313 -9.77701 -9.53127 -9.35859 -8.98729 -8.54219 -8.45587 -7.86768 -7.26560 -7.06774 -4.59497 0.78454 1.15157 2.19135 2.81222 2.87963 2.90840 2.91650 3.36166 3.66070 3.84301 3.94124 4.32342 4.35270 4.51638 4.69104 4.81112 5.02106 5.23943 5.37370 5.41760 5.48148 5.54324 5.59180 5.64111 5.84649 5.98635 5.99842 6.07171 6.11319 6.31420 6.52005 6.67572 6.70077 6.77616 6.87096 7.05671 7.30303 7.42472 7.43914 7.73630 7.81486 7.87837 7.92418 8.12508 8.26064 8.50618 8.53328 8.88063 9.77258 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.020424 B = 0.002972 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.616782 B = 9418.556024 C =10597.145888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.095 3.905 3 N -0.480 5.480 4 C 0.111 3.889 5 C -0.131 4.131 6 C 0.124 3.876 7 O -0.571 6.571 8 C -0.010 4.010 9 C 0.063 3.937 10 N -0.378 5.378 11 C -0.093 4.093 12 C -0.040 4.040 13 C -0.225 4.225 14 C 0.118 3.882 15 C -0.433 4.433 16 H 0.087 0.913 17 C 0.071 3.929 18 N -0.770 5.770 19 Si 0.916 3.084 20 H -0.264 1.264 21 H -0.274 1.274 22 H -0.258 1.258 23 C -0.164 4.164 24 C -0.099 4.099 25 C 0.082 3.918 26 O -0.461 6.461 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.164 0.836 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.385 0.615 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.288 0.712 38 H 0.120 0.880 39 H 0.089 0.911 40 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.758 10.197 1.594 10.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.043 4.043 3 N -0.191 5.191 4 C -0.045 4.045 5 C -0.135 4.135 6 C 0.046 3.954 7 O -0.377 6.377 8 C -0.018 4.018 9 C -0.134 4.134 10 N -0.084 5.084 11 C -0.198 4.198 12 C -0.060 4.060 13 C -0.245 4.245 14 C 0.114 3.886 15 C -0.461 4.461 16 H 0.105 0.895 17 C -0.150 4.150 18 N -0.393 5.393 19 Si 0.739 3.261 20 H -0.189 1.189 21 H -0.199 1.199 22 H -0.182 1.182 23 C -0.184 4.184 24 C -0.119 4.119 25 C 0.032 3.968 26 O -0.269 6.269 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.092 0.908 30 H 0.182 0.818 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.233 0.767 34 H 0.115 0.885 35 H 0.116 0.884 36 H 0.119 0.881 37 H 0.099 0.901 38 H 0.138 0.862 39 H 0.107 0.893 40 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -5.445 10.744 0.954 12.082 hybrid contribution 2.613 -1.604 0.064 3.067 sum -2.832 9.139 1.018 9.622 Atomic orbital electron populations 1.20554 0.88652 1.02928 1.03027 1.21669 0.97386 0.87751 0.97506 1.67436 1.10166 1.28201 1.13318 1.22346 0.88271 0.98455 0.95472 1.20683 0.95890 0.92880 1.04069 1.20765 0.90737 0.82893 1.01017 1.86367 1.28423 1.25117 1.97839 1.19467 0.92675 0.92244 0.97449 1.23621 0.95153 0.89790 1.04861 1.68296 1.39074 0.98141 1.02914 1.18186 0.99425 0.93602 1.08633 1.20133 0.97147 0.91905 0.96809 1.20662 1.02123 0.97644 1.04114 1.17775 0.90320 0.92624 0.87869 1.19803 0.95224 0.95757 1.35294 0.89538 1.26124 0.97795 0.98526 0.92595 1.69788 1.10542 1.28397 1.30529 0.86167 0.78326 0.81384 0.80203 1.18857 1.19922 1.18184 1.20925 1.01428 0.94307 1.01763 1.20976 0.93623 0.97904 0.99442 1.19348 0.89195 0.86666 1.01570 1.84804 1.74907 1.34462 1.32714 0.90582 0.90726 0.90847 0.81846 0.91652 0.91760 0.76749 0.88503 0.88443 0.88111 0.90112 0.86230 0.89271 0.75700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.06 9.95 36.00 0.36 -0.70 16 2 C 0.10 1.39 6.80 -82.45 -0.56 0.82 16 3 N -0.48 -7.25 10.24 -9.45 -0.10 -7.34 16 4 C 0.11 1.58 10.53 -17.64 -0.19 1.39 16 5 C -0.13 -1.88 5.94 -103.99 -0.62 -2.50 16 6 C 0.12 1.44 6.14 36.01 0.22 1.66 16 7 O -0.57 -5.74 12.17 -35.23 -0.43 -6.17 16 8 C -0.01 -0.16 5.92 -104.62 -0.62 -0.78 16 9 C 0.06 1.14 9.45 -14.49 -0.14 1.01 16 10 N -0.38 -7.73 8.38 -8.83 -0.07 -7.80 16 11 C -0.09 -2.10 6.20 -84.38 -0.52 -2.63 16 12 C -0.04 -0.90 9.93 -39.55 -0.39 -1.29 16 13 C -0.23 -5.21 9.73 -39.30 -0.38 -5.59 16 14 C 0.12 2.93 5.57 -106.78 -0.60 2.33 16 15 C -0.43 -10.50 9.02 -37.93 -0.34 -10.84 16 16 H 0.09 1.99 7.91 -52.49 -0.42 1.57 16 17 C 0.07 1.62 5.13 -17.31 -0.09 1.53 16 18 N -0.77 -18.09 10.96 55.55 0.61 -17.48 16 19 Si 0.92 16.89 29.60 -169.99 -5.03 11.86 16 20 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 21 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 22 H -0.26 -4.71 7.11 56.52 0.40 -4.30 16 23 C -0.16 -4.05 8.62 -39.30 -0.34 -4.39 16 24 C -0.10 -2.29 9.10 -39.55 -0.36 -2.65 16 25 C 0.08 1.29 6.73 -38.45 -0.26 1.03 16 26 O -0.46 -7.13 10.60 -18.84 -0.20 -7.33 16 27 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.07 0.73 7.53 -51.93 -0.39 0.34 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.16 2.10 7.00 -52.49 -0.37 1.73 16 31 H 0.07 0.72 8.11 -51.93 -0.42 0.30 16 32 H 0.06 0.72 8.10 -51.94 -0.42 0.30 16 33 H 0.38 2.04 9.12 45.56 0.42 2.45 16 34 H 0.10 1.69 6.63 -52.49 -0.35 1.34 16 35 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 36 H 0.10 2.15 8.06 -52.49 -0.42 1.72 16 37 H 0.29 6.07 8.29 -40.82 -0.34 5.73 16 38 H 0.12 3.00 6.17 -52.49 -0.32 2.68 16 39 H 0.09 1.92 7.64 -52.48 -0.40 1.52 16 40 H 0.39 4.68 9.06 45.56 0.41 5.09 16 LS Contribution 345.96 15.07 5.21 5.21 Total: -1.00 -29.01 345.96 -7.91 -36.93 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -3.09 Total: 13.71 kcal Atomic # 6 Polarization: -16.76 SS G_CDS: -4.82 Total: -21.58 kcal Atomic # 7 Polarization: -33.06 SS G_CDS: 0.44 Total: -32.62 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: -0.63 Total: -13.50 kcal Atomic # 14 Polarization: 16.89 SS G_CDS: -5.03 Total: 11.86 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.01 -7.91 -36.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747713177.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.814 kcal (2) G-P(sol) polarization free energy of solvation -29.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds