Wall clock time and date at job start Fri Apr 10 2020 22:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31776 * 119.58254 * 2 1 4 4 C 1.31942 * 122.23345 * 180.02562 * 3 2 1 5 5 C 1.37871 * 121.09874 * 359.97437 * 4 3 2 6 6 C 1.50701 * 120.48815 * 180.02562 * 5 4 3 7 7 O 1.42905 * 109.46922 * 0.02562 * 6 5 4 8 8 C 1.40289 * 119.02271 * 0.02562 * 5 4 3 9 9 C 1.46968 * 120.99390 * 179.97438 * 8 5 4 10 10 N 1.30711 * 119.99729 * 179.97438 * 9 8 5 11 11 C 1.35970 * 120.00061 * 179.97438 * 10 9 8 12 12 C 1.40429 * 119.92386 * 134.99859 * 11 10 9 13 13 C 1.36023 * 120.08245 * 179.70433 * 12 11 10 14 14 C 1.41092 * 119.91492 * 0.27601 * 13 12 11 15 15 C 1.40764 * 120.07455 * 180.02562 * 14 13 12 16 16 H 1.07992 * 119.99958 * 24.79838 * 15 14 13 17 17 C 1.40087 * 119.99708 * 204.79222 * 15 14 13 18 18 N 1.30760 * 120.00190 * 17.97439 * 17 15 14 19 19 Si 1.86799 * 119.99793 * 197.97042 * 17 15 14 20 20 H 1.48509 * 109.47155 * 90.00250 * 19 17 15 21 21 H 1.48507 * 109.47355 * 210.00025 * 19 17 15 22 22 H 1.48498 * 109.47427 * 330.00389 * 19 17 15 23 23 C 1.41090 * 119.84914 * 359.97438 * 14 13 12 24 24 C 1.36020 * 119.91620 * 0.02562 * 23 14 13 25 25 C 1.38689 * 119.59107 * 180.27725 * 2 1 3 26 26 O 1.35712 * 120.59235 * 0.02562 * 25 2 1 27 27 H 1.09001 * 109.47408 * 90.00488 * 1 2 3 28 28 H 1.09006 * 109.46689 * 210.00356 * 1 2 3 29 29 H 1.08998 * 109.47732 * 330.00246 * 1 2 3 30 30 H 1.07999 * 119.45371 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.47009 * 120.01559 * 6 5 4 32 32 H 1.08989 * 109.47295 * 240.01955 * 6 5 4 33 33 H 0.96707 * 113.99733 * 180.02562 * 7 6 5 34 34 H 1.08000 * 120.00208 * 359.97438 * 9 8 5 35 35 H 1.08000 * 119.96113 * 359.97438 * 12 11 10 36 36 H 1.07996 * 120.04163 * 180.29576 * 13 12 11 37 37 H 0.97004 * 119.99657 * 180.02562 * 18 17 15 38 38 H 1.08000 * 120.04494 * 180.02562 * 23 14 13 39 39 H 1.08003 * 119.96069 * 180.02562 * 24 23 14 40 40 H 0.96697 * 113.99950 * 270.24617 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1575 1.1460 0.0000 4 6 3.4755 1.2070 -0.0005 5 6 4.2415 0.0606 -0.0005 6 6 5.7460 0.1464 -0.0005 7 8 6.1449 1.5186 0.0001 8 6 3.5996 -1.1868 -0.0006 9 6 4.3736 -2.4362 -0.0011 10 7 3.7554 -3.5879 -0.0007 11 6 4.4714 -4.7438 -0.0017 12 6 4.1097 -5.7927 0.8591 13 6 4.8201 -6.9527 0.8564 14 6 5.9251 -7.0991 -0.0086 15 6 6.6622 -8.2983 -0.0145 16 1 6.1975 -9.2193 0.3048 17 6 7.9986 -8.2969 -0.4348 18 7 8.6673 -7.1743 -0.4841 19 14 8.8252 -9.8987 -0.9246 20 1 8.6280 -10.1335 -2.3777 21 1 10.2783 -9.8165 -0.6293 22 1 8.2267 -11.0198 -0.1565 23 6 6.2889 -6.0412 -0.8684 24 6 5.5740 -4.8841 -0.8603 25 6 2.1918 -1.2060 -0.0058 26 8 1.5170 -2.3834 -0.0121 27 1 -0.3634 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 3.9625 2.1710 -0.0009 31 1 6.1380 -0.3462 0.8893 32 1 6.1380 -0.3456 -0.8906 33 1 7.1031 1.6497 -0.0002 34 1 5.4531 -2.4027 -0.0020 35 1 3.2638 -5.6798 1.5210 36 1 4.5384 -7.7606 1.5153 37 1 9.5925 -7.1733 -0.7755 38 1 7.1339 -6.1500 -1.5321 39 1 5.8516 -4.0740 -1.5185 40 1 1.3178 -2.7273 0.8695 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747713177.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:41 Heat of formation + Delta-G solvation = -38.901233 kcal Electronic energy + Delta-G solvation = -24343.911897 eV Core-core repulsion = 20701.813817 eV Total energy + Delta-G solvation = -3642.098080 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.63993 -39.94763 -38.42643 -37.68133 -37.12527 -35.41641 -34.15421 -32.26630 -31.55078 -30.89794 -29.47910 -27.42671 -26.15541 -25.29438 -23.33317 -22.98193 -22.11645 -20.67155 -19.39873 -19.09689 -19.01487 -17.67538 -17.27279 -16.96358 -16.58420 -16.44598 -15.84951 -15.81805 -15.61235 -15.16951 -14.75276 -14.63641 -14.48596 -14.11374 -13.76618 -13.73918 -13.38764 -13.33048 -13.11326 -12.92652 -12.84038 -12.70707 -12.52293 -12.38772 -12.07561 -11.77649 -11.51025 -11.34744 -11.08950 -10.78379 -10.32442 -9.98018 -9.65657 -9.56032 -8.97433 -8.75241 -6.38730 -0.53830 0.01444 0.62674 1.07180 1.35367 1.39518 1.50591 1.82697 2.14004 2.59454 2.73036 2.96573 3.21364 3.31430 3.49801 3.60295 3.64834 4.01311 4.21154 4.22511 4.28227 4.37543 4.39784 4.47785 4.51685 4.73655 4.78519 4.83261 4.91957 5.01253 5.04560 5.14441 5.15376 5.22221 5.32326 5.53702 5.61277 5.71211 5.95248 6.01582 6.17037 6.49004 6.74511 6.76518 6.79445 6.86158 7.01310 7.23877 8.14059 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.020424 B = 0.002972 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.616782 B = 9418.556024 C =10597.145888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.089 3.911 3 N -0.484 5.484 4 C 0.104 3.896 5 C -0.120 4.120 6 C 0.125 3.875 7 O -0.578 6.578 8 C -0.041 4.041 9 C 0.103 3.897 10 N -0.406 5.406 11 C -0.091 4.091 12 C -0.050 4.050 13 C -0.235 4.235 14 C 0.088 3.912 15 C -0.472 4.472 16 H 0.087 0.913 17 C 0.035 3.965 18 N -0.804 5.804 19 Si 0.987 3.013 20 H -0.262 1.262 21 H -0.265 1.265 22 H -0.255 1.255 23 C -0.183 4.183 24 C -0.110 4.110 25 C 0.082 3.918 26 O -0.472 6.472 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.180 0.820 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.406 0.594 34 H 0.105 0.895 35 H 0.119 0.881 36 H 0.111 0.889 37 H 0.295 0.705 38 H 0.106 0.894 39 H 0.100 0.900 40 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.178 11.808 1.761 12.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.050 4.050 3 N -0.195 5.195 4 C -0.052 4.052 5 C -0.125 4.125 6 C 0.047 3.953 7 O -0.387 6.387 8 C -0.050 4.050 9 C -0.097 4.097 10 N -0.111 5.111 11 C -0.194 4.194 12 C -0.070 4.070 13 C -0.255 4.255 14 C 0.085 3.915 15 C -0.499 4.499 16 H 0.105 0.895 17 C -0.184 4.184 18 N -0.428 5.428 19 Si 0.807 3.193 20 H -0.187 1.187 21 H -0.189 1.189 22 H -0.178 1.178 23 C -0.203 4.203 24 C -0.130 4.130 25 C 0.032 3.968 26 O -0.282 6.282 27 H 0.099 0.901 28 H 0.106 0.894 29 H 0.103 0.897 30 H 0.197 0.803 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.258 0.742 34 H 0.122 0.878 35 H 0.137 0.863 36 H 0.129 0.871 37 H 0.106 0.894 38 H 0.124 0.876 39 H 0.118 0.882 40 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -5.858 12.335 1.137 13.703 hybrid contribution 2.562 -1.621 0.060 3.032 sum -3.296 10.714 1.198 11.274 Atomic orbital electron populations 1.20642 0.86393 1.04213 1.03713 1.22094 0.98917 0.87060 0.96933 1.67504 1.10688 1.28508 1.12842 1.22644 0.88166 0.99100 0.95244 1.20961 0.97553 0.92053 1.01915 1.20718 0.88940 0.83980 1.01644 1.86313 1.30723 1.23891 1.97817 1.19519 0.93125 0.92017 1.00291 1.24014 0.95913 0.89918 0.99848 1.68359 1.38560 0.97971 1.06247 1.18393 0.98719 0.94625 1.07659 1.20372 0.97787 0.91664 0.97141 1.20860 1.02013 0.98553 1.04122 1.18084 0.91420 0.93281 0.88734 1.20002 0.96414 0.95715 1.37817 0.89492 1.26926 0.97784 1.01816 0.91833 1.69821 1.11200 1.30330 1.31417 0.85112 0.77480 0.77089 0.79612 1.18677 1.18928 1.17805 1.20879 1.01880 0.95236 1.02289 1.21114 0.94076 0.97788 1.00017 1.19546 0.89191 0.87207 1.00839 1.84761 1.74868 1.34527 1.34043 0.90057 0.89357 0.89707 0.80333 0.90816 0.91182 0.74209 0.87762 0.86300 0.87069 0.89377 0.87573 0.88238 0.74104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.83 9.95 71.23 0.71 -1.12 16 2 C 0.09 2.37 6.80 42.67 0.29 2.66 16 3 N -0.48 -13.43 10.24 -183.80 -1.88 -15.31 16 4 C 0.10 2.71 10.53 84.59 0.89 3.60 16 5 C -0.12 -3.17 5.94 -19.45 -0.12 -3.29 16 6 C 0.13 2.57 6.14 71.24 0.44 3.01 16 7 O -0.58 -9.85 12.17 -148.98 -1.81 -11.66 16 8 C -0.04 -1.24 5.92 -19.87 -0.12 -1.36 16 9 C 0.10 3.57 9.45 87.15 0.82 4.39 16 10 N -0.41 -16.15 8.38 -181.86 -1.52 -17.68 16 11 C -0.09 -4.08 6.20 39.57 0.25 -3.84 16 12 C -0.05 -2.24 9.93 22.29 0.22 -2.02 16 13 C -0.24 -11.18 9.73 22.46 0.22 -10.96 16 14 C 0.09 4.55 5.57 -21.26 -0.12 4.43 16 15 C -0.47 -23.79 9.02 23.34 0.21 -23.58 16 16 H 0.09 4.17 7.91 -2.91 -0.02 4.15 16 17 C 0.03 1.61 5.13 85.30 0.44 2.05 16 18 N -0.80 -38.99 10.96 21.85 0.24 -38.75 16 19 Si 0.99 35.07 29.60 68.60 2.03 37.10 16 20 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 21 H -0.26 -8.89 7.11 99.48 0.71 -8.19 16 22 H -0.25 -8.78 7.11 99.48 0.71 -8.07 16 23 C -0.18 -9.37 8.62 22.45 0.19 -9.18 16 24 C -0.11 -5.16 9.10 22.29 0.20 -4.96 16 25 C 0.08 2.42 6.73 23.00 0.15 2.58 16 26 O -0.47 -13.78 10.60 -90.33 -0.96 -14.74 16 27 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.09 1.49 7.53 -2.38 -0.02 1.48 16 29 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 30 H 0.18 4.06 7.00 -2.91 -0.02 4.04 16 31 H 0.07 1.42 8.11 -2.39 -0.02 1.40 16 32 H 0.07 1.39 8.10 -2.39 -0.02 1.37 16 33 H 0.41 3.03 9.12 -74.05 -0.68 2.35 16 34 H 0.11 3.46 6.63 -2.91 -0.02 3.44 16 35 H 0.12 4.64 8.06 -2.91 -0.02 4.61 16 36 H 0.11 4.86 8.06 -2.91 -0.02 4.83 16 37 H 0.30 12.76 8.29 -92.71 -0.77 11.99 16 38 H 0.11 5.61 6.17 -2.91 -0.02 5.59 16 39 H 0.10 4.31 7.64 -2.91 -0.02 4.29 16 40 H 0.40 9.01 9.06 -74.06 -0.67 8.34 16 Total: -1.00 -62.98 345.96 0.54 -62.44 By element: Atomic # 1 Polarization: 36.41 SS G_CDS: -0.24 Total: 36.17 kcal Atomic # 6 Polarization: -42.25 SS G_CDS: 4.68 Total: -37.57 kcal Atomic # 7 Polarization: -68.57 SS G_CDS: -3.17 Total: -71.74 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -2.77 Total: -26.40 kcal Atomic # 14 Polarization: 35.07 SS G_CDS: 2.03 Total: 37.10 kcal Total: -62.98 0.54 -62.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747713177.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.543 kcal (2) G-P(sol) polarization free energy of solvation -62.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds