Wall clock time and date at job start Fri Apr 10 2020 22:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38630 * 120.46854 * 2 1 4 4 C 1.38590 * 118.48589 * 179.97438 * 3 2 1 5 5 C 1.38598 * 119.35228 * 359.97438 * 4 3 2 6 6 N 1.31501 * 120.90149 * 0.03213 * 5 4 3 7 7 C 1.32746 * 121.64102 * 359.67388 * 6 5 4 8 8 C 1.48166 * 119.72274 * 180.31578 * 7 6 5 9 9 O 1.21517 * 120.00056 * 186.13823 * 8 7 6 10 10 N 1.34770 * 120.00128 * 6.13513 * 8 7 6 11 11 C 1.46502 * 120.00238 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.46976 * 180.02562 * 11 10 8 13 13 C 1.38299 * 119.92944 * 269.72413 * 12 11 10 14 14 C 1.38102 * 120.06596 * 179.72834 * 13 12 11 15 15 C 1.38883 * 119.93175 * 0.57273 * 14 13 12 16 16 O 1.35753 * 120.07296 * 179.68693 * 15 14 13 17 17 C 1.34828 * 116.99936 * 185.69063 * 16 15 14 18 18 H 1.08002 * 120.00190 * 354.88722 * 17 16 15 19 19 C 1.38658 * 119.99703 * 174.88579 * 17 16 15 20 20 N 1.31560 * 119.99612 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00118 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47053 * 89.99787 * 21 19 17 23 23 H 1.48496 * 109.46942 * 209.99696 * 21 19 17 24 24 H 1.48499 * 109.46906 * 330.00001 * 21 19 17 25 25 C 1.38881 * 119.85808 * 359.70153 * 15 14 13 26 26 C 1.38096 * 119.93222 * 0.02562 * 25 15 14 27 27 H 1.09006 * 109.47452 * 97.12043 * 1 2 3 28 28 H 1.09006 * 109.47201 * 337.12210 * 1 2 3 29 29 H 1.08997 * 109.47439 * 217.11921 * 1 2 3 30 30 H 1.07994 * 120.75764 * 359.97438 * 3 2 1 31 31 H 1.07997 * 120.32154 * 179.97438 * 4 3 2 32 32 H 1.08001 * 119.54942 * 180.02562 * 5 4 3 33 33 H 0.97006 * 120.00191 * 0.02562 * 10 8 7 34 34 H 1.08997 * 109.47001 * 299.99961 * 11 10 8 35 35 H 1.09002 * 109.47040 * 60.00285 * 11 10 8 36 36 H 1.07995 * 119.96830 * 359.97438 * 13 12 11 37 37 H 1.08001 * 120.03881 * 180.27660 * 14 13 12 38 38 H 0.97005 * 119.99386 * 180.02562 * 20 19 17 39 39 H 1.08008 * 120.03413 * 179.97438 * 25 15 14 40 40 H 1.08001 * 119.96472 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1949 0.0000 4 6 3.5950 1.1469 0.0005 5 6 4.2322 -0.0839 0.0016 6 7 3.5406 -1.2024 0.0015 7 6 2.2132 -1.2004 0.0068 8 6 1.4766 -2.4860 0.0135 9 8 0.2662 -2.4933 -0.0942 10 7 2.1490 -3.6472 0.1389 11 6 1.4207 -4.9183 0.1461 12 6 2.3973 -6.0560 0.2979 13 6 2.9465 -6.6483 -0.8246 14 6 3.8461 -7.6874 -0.6886 15 6 4.1900 -8.1451 0.5767 16 8 5.0691 -9.1705 0.7135 17 6 5.2691 -9.6431 1.9603 18 1 4.8046 -9.1544 2.8040 19 6 6.0711 -10.7565 2.1593 20 7 6.2667 -11.2173 3.3759 21 14 6.8751 -11.6013 0.7000 22 1 8.2072 -10.9947 0.4491 23 1 7.0372 -13.0480 0.9933 24 1 6.0200 -11.4326 -0.5023 25 6 3.6323 -7.5519 1.7018 26 6 2.7377 -6.5095 1.5593 27 1 -0.3634 -0.1274 -1.0198 28 1 -0.3634 0.9469 0.3995 29 1 -0.3634 -0.8194 0.6201 30 1 1.6901 2.1415 -0.0004 31 1 4.1721 2.0597 0.0001 32 1 5.3114 -0.1250 0.0025 33 1 3.1152 -3.6414 0.2252 34 1 0.7179 -4.9297 0.9792 35 1 0.8752 -5.0299 -0.7910 36 1 2.6747 -6.2955 -1.8084 37 1 4.2781 -8.1467 -1.5654 38 1 6.8281 -11.9960 3.5151 39 1 3.8974 -7.9059 2.6872 40 1 2.3034 -6.0481 2.4339 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749968573.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:44 Heat of formation + Delta-G solvation = -1.138655 kcal Electronic energy + Delta-G solvation = -23878.262161 eV Core-core repulsion = 20237.801589 eV Total energy + Delta-G solvation = -3640.460571 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.95171 -39.43522 -38.86976 -37.02824 -34.81267 -33.58930 -32.50321 -32.33513 -30.38312 -30.08770 -27.74509 -26.18904 -25.04815 -24.04583 -22.44267 -22.16165 -20.86785 -20.58257 -18.32690 -17.94866 -17.33227 -17.01620 -15.98687 -15.72755 -15.51736 -15.11669 -14.95019 -14.42508 -14.22380 -13.93358 -13.81211 -13.70351 -13.47042 -13.32593 -12.95071 -12.84944 -12.70502 -12.52196 -12.27539 -12.24181 -11.97176 -11.45291 -10.94405 -10.85182 -10.74730 -10.24271 -10.20561 -10.13032 -9.61603 -9.46831 -9.35584 -8.93835 -8.91283 -8.35423 -7.46200 -6.48413 -4.15309 0.39271 0.88285 1.96569 2.05306 2.62284 3.16507 3.21311 3.23764 3.35997 3.60869 3.96777 4.18122 4.39645 4.43660 4.53008 4.60769 4.66991 4.75830 5.04317 5.05286 5.14117 5.26177 5.35302 5.39438 5.53872 5.57817 5.68611 5.73759 5.81623 5.86059 6.03598 6.05237 6.26342 6.31869 6.46529 6.51254 6.69961 6.91899 7.14302 7.20725 7.36178 7.51825 7.66111 7.72694 7.95993 8.16094 8.86210 9.47097 10.58799 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.024743 B = 0.002428 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.346444 B =11530.577932 C =11998.961201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.075 4.075 3 C -0.089 4.089 4 C -0.148 4.148 5 C 0.090 3.910 6 N -0.453 5.453 7 C 0.074 3.926 8 C 0.565 3.435 9 O -0.536 6.536 10 N -0.700 5.700 11 C 0.176 3.824 12 C -0.206 4.206 13 C -0.055 4.055 14 C -0.195 4.195 15 C 0.167 3.833 16 O -0.213 6.213 17 C -0.391 4.391 18 H 0.108 0.892 19 C 0.064 3.936 20 N -0.876 5.876 21 Si 0.906 3.094 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.259 1.259 25 C -0.224 4.224 26 C -0.051 4.051 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.100 0.900 30 H 0.140 0.860 31 H 0.140 0.860 32 H 0.163 0.837 33 H 0.412 0.588 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.281 0.719 39 H 0.135 0.865 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.854 22.930 -6.951 24.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.078 4.078 3 C -0.115 4.115 4 C -0.168 4.168 5 C -0.070 4.070 6 N -0.163 5.163 7 C -0.065 4.065 8 C 0.350 3.650 9 O -0.414 6.414 10 N -0.351 5.351 11 C 0.054 3.946 12 C -0.207 4.207 13 C -0.074 4.074 14 C -0.214 4.214 15 C 0.114 3.886 16 O -0.117 6.117 17 C -0.466 4.466 18 H 0.125 0.875 19 C -0.140 4.140 20 N -0.513 5.513 21 Si 0.731 3.269 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.183 1.183 25 C -0.243 4.243 26 C -0.070 4.070 27 H 0.096 0.904 28 H 0.077 0.923 29 H 0.118 0.882 30 H 0.158 0.842 31 H 0.157 0.843 32 H 0.180 0.820 33 H 0.249 0.751 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.132 0.868 37 H 0.136 0.864 38 H 0.091 0.909 39 H 0.152 0.848 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.056 21.732 -7.039 23.908 hybrid contribution 0.673 0.456 -0.265 0.855 sum -6.382 22.188 -7.303 24.215 Atomic orbital electron populations 1.21061 0.88960 1.03287 1.04059 1.20967 0.98465 0.92390 0.95944 1.21561 0.94184 0.98091 0.97627 1.22381 0.95287 0.99878 0.99213 1.22812 1.00590 0.87264 0.96304 1.67576 1.07093 1.32028 1.09634 1.21092 0.89880 0.93767 1.01713 1.17896 0.86579 0.83174 0.77332 1.90723 1.13133 1.86785 1.50716 1.46214 1.12047 1.05183 1.71650 1.20072 0.92702 0.79792 1.02039 1.19254 1.05830 1.01893 0.93772 1.20533 0.95029 0.94513 0.97284 1.20207 1.04132 1.01931 0.95118 1.19183 0.88064 0.87960 0.93371 1.83572 1.52499 1.43183 1.32485 1.20793 1.31716 1.12675 0.81461 0.87497 1.24492 0.96379 0.95531 0.97561 1.69648 1.37265 1.24280 1.20134 0.86169 0.80086 0.78191 0.82413 1.19810 1.20729 1.18296 1.21275 1.02936 1.00507 0.99566 1.20695 0.95472 0.94959 0.95880 0.90353 0.92289 0.88162 0.84208 0.84254 0.81986 0.75127 0.91168 0.91168 0.86754 0.86350 0.90929 0.84782 0.87096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 8.74 36.00 0.31 -0.78 16 2 C -0.07 -0.76 5.93 -104.09 -0.62 -1.38 16 3 C -0.09 -0.67 9.83 -39.31 -0.39 -1.06 16 4 C -0.15 -1.01 10.11 -39.32 -0.40 -1.40 16 5 C 0.09 0.78 11.18 -17.56 -0.20 0.58 16 6 N -0.45 -5.29 9.56 -9.80 -0.09 -5.38 16 7 C 0.07 0.90 6.75 -83.01 -0.56 0.34 16 8 C 0.57 7.82 7.75 -12.19 -0.09 7.73 16 9 O -0.54 -8.20 13.31 5.35 0.07 -8.13 16 10 N -0.70 -9.44 5.54 -62.33 -0.35 -9.79 16 11 C 0.18 2.43 5.80 -5.19 -0.03 2.40 16 12 C -0.21 -3.25 5.25 -104.58 -0.55 -3.80 16 13 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 14 C -0.19 -3.70 9.99 -39.39 -0.39 -4.09 16 15 C 0.17 3.73 6.65 -39.10 -0.26 3.47 16 16 O -0.21 -5.48 8.59 0.04 0.00 -5.48 16 17 C -0.39 -10.78 9.95 30.89 0.31 -10.47 16 18 H 0.11 3.00 5.44 -52.49 -0.29 2.72 16 19 C 0.06 1.77 5.49 -17.51 -0.10 1.67 16 20 N -0.88 -24.90 13.96 55.48 0.77 -24.12 16 21 Si 0.91 21.27 28.62 -169.99 -4.86 16.41 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.26 -6.09 7.11 56.52 0.40 -5.69 16 25 C -0.22 -4.64 9.17 -39.40 -0.36 -5.00 16 26 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.41 8.05 -51.93 -0.42 -0.01 16 29 H 0.10 1.15 5.86 -51.93 -0.30 0.84 16 30 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 31 H 0.14 0.51 8.06 -52.49 -0.42 0.09 16 32 H 0.16 0.97 8.06 -52.49 -0.42 0.54 16 33 H 0.41 5.52 7.81 -40.82 -0.32 5.20 16 34 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 35 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 36 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.12 2.10 8.06 -52.49 -0.42 1.68 16 38 H 0.28 7.35 8.31 -40.82 -0.34 7.02 16 39 H 0.13 2.94 5.64 -52.48 -0.30 2.64 16 40 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 LS Contribution 346.62 15.07 5.22 5.22 Total: -1.00 -30.53 346.62 -7.88 -38.41 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -4.56 Total: 7.19 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -4.09 Total: -14.34 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.34 Total: -39.29 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: 0.07 Total: -13.60 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.86 Total: 16.41 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.53 -7.88 -38.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749968573.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.268 kcal (2) G-P(sol) polarization free energy of solvation -30.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds