Wall clock time and date at job start Fri Apr 10 2020 22:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38630 * 120.46854 * 2 1 4 4 C 1.38590 * 118.48589 * 179.97438 * 3 2 1 5 5 C 1.38598 * 119.35228 * 359.97438 * 4 3 2 6 6 N 1.31501 * 120.90149 * 0.03213 * 5 4 3 7 7 C 1.32746 * 121.64102 * 359.67388 * 6 5 4 8 8 C 1.48166 * 119.72274 * 180.31578 * 7 6 5 9 9 O 1.21517 * 120.00056 * 186.13823 * 8 7 6 10 10 N 1.34770 * 120.00128 * 6.13513 * 8 7 6 11 11 C 1.46502 * 120.00238 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.46976 * 180.02562 * 11 10 8 13 13 C 1.38299 * 119.92944 * 269.72413 * 12 11 10 14 14 C 1.38102 * 120.06596 * 179.72834 * 13 12 11 15 15 C 1.38883 * 119.93175 * 0.57273 * 14 13 12 16 16 O 1.35753 * 120.07296 * 179.68693 * 15 14 13 17 17 C 1.34828 * 116.99936 * 185.69063 * 16 15 14 18 18 H 1.08002 * 120.00190 * 354.88722 * 17 16 15 19 19 C 1.38658 * 119.99703 * 174.88579 * 17 16 15 20 20 N 1.31560 * 119.99612 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00118 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47053 * 89.99787 * 21 19 17 23 23 H 1.48496 * 109.46942 * 209.99696 * 21 19 17 24 24 H 1.48499 * 109.46906 * 330.00001 * 21 19 17 25 25 C 1.38881 * 119.85808 * 359.70153 * 15 14 13 26 26 C 1.38096 * 119.93222 * 0.02562 * 25 15 14 27 27 H 1.09006 * 109.47452 * 97.12043 * 1 2 3 28 28 H 1.09006 * 109.47201 * 337.12210 * 1 2 3 29 29 H 1.08997 * 109.47439 * 217.11921 * 1 2 3 30 30 H 1.07994 * 120.75764 * 359.97438 * 3 2 1 31 31 H 1.07997 * 120.32154 * 179.97438 * 4 3 2 32 32 H 1.08001 * 119.54942 * 180.02562 * 5 4 3 33 33 H 0.97006 * 120.00191 * 0.02562 * 10 8 7 34 34 H 1.08997 * 109.47001 * 299.99961 * 11 10 8 35 35 H 1.09002 * 109.47040 * 60.00285 * 11 10 8 36 36 H 1.07995 * 119.96830 * 359.97438 * 13 12 11 37 37 H 1.08001 * 120.03881 * 180.27660 * 14 13 12 38 38 H 0.97005 * 119.99386 * 180.02562 * 20 19 17 39 39 H 1.08008 * 120.03413 * 179.97438 * 25 15 14 40 40 H 1.08001 * 119.96472 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1949 0.0000 4 6 3.5950 1.1469 0.0005 5 6 4.2322 -0.0839 0.0016 6 7 3.5406 -1.2024 0.0015 7 6 2.2132 -1.2004 0.0068 8 6 1.4766 -2.4860 0.0135 9 8 0.2662 -2.4933 -0.0942 10 7 2.1490 -3.6472 0.1389 11 6 1.4207 -4.9183 0.1461 12 6 2.3973 -6.0560 0.2979 13 6 2.9465 -6.6483 -0.8246 14 6 3.8461 -7.6874 -0.6886 15 6 4.1900 -8.1451 0.5767 16 8 5.0691 -9.1705 0.7135 17 6 5.2691 -9.6431 1.9603 18 1 4.8046 -9.1544 2.8040 19 6 6.0711 -10.7565 2.1593 20 7 6.2667 -11.2173 3.3759 21 14 6.8751 -11.6013 0.7000 22 1 8.2072 -10.9947 0.4491 23 1 7.0372 -13.0480 0.9933 24 1 6.0200 -11.4326 -0.5023 25 6 3.6323 -7.5519 1.7018 26 6 2.7377 -6.5095 1.5593 27 1 -0.3634 -0.1274 -1.0198 28 1 -0.3634 0.9469 0.3995 29 1 -0.3634 -0.8194 0.6201 30 1 1.6901 2.1415 -0.0004 31 1 4.1721 2.0597 0.0001 32 1 5.3114 -0.1250 0.0025 33 1 3.1152 -3.6414 0.2252 34 1 0.7179 -4.9297 0.9792 35 1 0.8752 -5.0299 -0.7910 36 1 2.6747 -6.2955 -1.8084 37 1 4.2781 -8.1467 -1.5654 38 1 6.8281 -11.9960 3.5151 39 1 3.8974 -7.9059 2.6872 40 1 2.3034 -6.0481 2.4339 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749968573.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:44 Heat of formation + Delta-G solvation = -20.443123 kcal Electronic energy + Delta-G solvation = -23879.099265 eV Core-core repulsion = 20237.801589 eV Total energy + Delta-G solvation = -3641.297676 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.76183 -40.97350 -39.94648 -38.59923 -35.93987 -34.53063 -34.31153 -33.10583 -31.90067 -31.46124 -28.59480 -27.70509 -26.41901 -25.06344 -23.74059 -23.14782 -22.11231 -21.79272 -19.87267 -19.31393 -19.00250 -17.81383 -16.88415 -16.76871 -16.60898 -16.39899 -16.13399 -15.84111 -15.71968 -15.52160 -15.01117 -14.95555 -14.47044 -14.36456 -14.25621 -14.06830 -14.01759 -13.67761 -13.42479 -13.25472 -13.07367 -12.91012 -12.57566 -12.48763 -12.34074 -11.94705 -11.31968 -11.12608 -10.92072 -10.76442 -10.43079 -10.24026 -9.87573 -9.83152 -9.11650 -8.51626 -6.24833 -0.33131 0.25238 0.46281 0.52671 1.31944 1.35742 1.51733 1.72388 2.16281 2.27108 2.76772 2.85461 2.99708 3.13503 3.24518 3.75865 3.82930 3.88274 3.98485 3.99150 4.06392 4.11642 4.40627 4.50013 4.52340 4.57614 4.69612 4.77747 4.80145 4.81675 4.92941 5.11091 5.17253 5.19745 5.29368 5.31756 5.46388 5.51871 5.68278 5.70450 5.76769 5.86487 6.17022 6.42041 6.82025 6.82324 7.13464 7.54848 8.59695 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.024743 B = 0.002428 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.346444 B =11530.577932 C =11998.961201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.086 4.086 3 C -0.087 4.087 4 C -0.131 4.131 5 C 0.078 3.922 6 N -0.479 5.479 7 C 0.041 3.959 8 C 0.563 3.437 9 O -0.556 6.556 10 N -0.701 5.701 11 C 0.181 3.819 12 C -0.176 4.176 13 C -0.045 4.045 14 C -0.191 4.191 15 C 0.130 3.870 16 O -0.241 6.241 17 C -0.401 4.401 18 H 0.082 0.918 19 C 0.011 3.989 20 N -0.922 5.922 21 Si 0.971 3.029 22 H -0.265 1.265 23 H -0.268 1.268 24 H -0.261 1.261 25 C -0.237 4.237 26 C -0.050 4.050 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.173 0.827 31 H 0.179 0.821 32 H 0.186 0.814 33 H 0.413 0.587 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.153 0.847 37 H 0.132 0.868 38 H 0.285 0.715 39 H 0.110 0.890 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.299 26.310 -9.112 28.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.089 4.089 3 C -0.112 4.112 4 C -0.150 4.150 5 C -0.082 4.082 6 N -0.191 5.191 7 C -0.095 4.095 8 C 0.349 3.651 9 O -0.436 6.436 10 N -0.351 5.351 11 C 0.059 3.941 12 C -0.177 4.177 13 C -0.064 4.064 14 C -0.210 4.210 15 C 0.081 3.919 16 O -0.148 6.148 17 C -0.477 4.477 18 H 0.100 0.900 19 C -0.188 4.188 20 N -0.562 5.562 21 Si 0.793 3.207 22 H -0.190 1.190 23 H -0.193 1.193 24 H -0.186 1.186 25 C -0.257 4.257 26 C -0.069 4.069 27 H 0.092 0.908 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.191 0.809 31 H 0.196 0.804 32 H 0.203 0.797 33 H 0.249 0.751 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.170 0.830 37 H 0.150 0.850 38 H 0.095 0.905 39 H 0.128 0.872 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.532 25.150 -9.212 27.822 hybrid contribution 0.611 -0.182 0.347 0.725 sum -6.922 24.968 -8.865 27.384 Atomic orbital electron populations 1.20982 0.88843 1.03707 1.03376 1.21170 0.98794 0.92838 0.96102 1.21978 0.94691 0.98301 0.96244 1.22819 0.95276 1.00600 0.96334 1.23365 1.01747 0.87371 0.95752 1.67502 1.06985 1.33852 1.10720 1.20917 0.90454 0.93465 1.04703 1.18225 0.86469 0.83800 0.76564 1.90712 1.14003 1.87222 1.51658 1.46092 1.11983 1.05028 1.72029 1.20019 0.92026 0.79170 1.02932 1.19542 1.04045 1.01121 0.92985 1.20944 0.93302 0.92965 0.99146 1.20510 1.04129 1.02198 0.94168 1.19723 0.88960 0.88069 0.95192 1.83520 1.55052 1.45263 1.30955 1.20721 1.31938 1.13046 0.81964 0.90004 1.25299 0.97084 0.96195 1.00232 1.69733 1.39075 1.25467 1.21934 0.85211 0.79067 0.77656 0.78777 1.19009 1.19320 1.18554 1.21262 1.04207 1.01824 0.98371 1.20913 0.94465 0.93846 0.97678 0.90842 0.89632 0.90634 0.80946 0.80378 0.79734 0.75056 0.90791 0.89980 0.82955 0.84982 0.90516 0.87170 0.84926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.95 8.74 71.24 0.62 -1.33 16 2 C -0.09 -1.59 5.93 -19.52 -0.12 -1.71 16 3 C -0.09 -0.99 9.83 22.45 0.22 -0.77 16 4 C -0.13 -1.24 10.11 22.44 0.23 -1.02 16 5 C 0.08 1.13 11.18 84.83 0.95 2.08 16 6 N -0.48 -10.46 9.56 -184.91 -1.77 -12.23 16 7 C 0.04 0.96 6.75 41.89 0.28 1.25 16 8 C 0.56 15.09 7.75 86.88 0.67 15.77 16 9 O -0.56 -16.71 13.31 -3.77 -0.05 -16.76 16 10 N -0.70 -17.83 5.54 -469.39 -2.60 -20.43 16 11 C 0.18 4.57 5.80 85.63 0.50 5.06 16 12 C -0.18 -5.16 5.25 -19.83 -0.10 -5.27 16 13 C -0.05 -1.34 9.69 22.25 0.22 -1.12 16 14 C -0.19 -7.02 9.99 22.39 0.22 -6.79 16 15 C 0.13 5.94 6.65 22.58 0.15 6.09 16 16 O -0.24 -12.86 8.59 -22.76 -0.20 -13.06 16 17 C -0.40 -23.35 9.95 67.92 0.68 -22.68 16 18 H 0.08 5.00 5.44 -2.91 -0.02 4.99 16 19 C 0.01 0.61 5.49 84.83 0.47 1.08 16 20 N -0.92 -54.77 13.96 21.61 0.30 -54.47 16 21 Si 0.97 44.96 28.62 68.60 1.96 46.92 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 24 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 25 C -0.24 -10.20 9.17 22.39 0.21 -9.99 16 26 C -0.05 -1.71 9.69 22.25 0.22 -1.50 16 27 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 28 H 0.08 0.96 8.05 -2.38 -0.02 0.95 16 29 H 0.08 1.71 5.86 -2.39 -0.01 1.69 16 30 H 0.17 0.79 8.06 -2.91 -0.02 0.76 16 31 H 0.18 0.30 8.06 -2.91 -0.02 0.27 16 32 H 0.19 1.63 8.06 -2.91 -0.02 1.61 16 33 H 0.41 10.48 7.81 -92.70 -0.72 9.76 16 34 H 0.07 1.87 8.08 -2.39 -0.02 1.85 16 35 H 0.08 1.95 8.08 -2.39 -0.02 1.93 16 36 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 37 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 38 H 0.29 15.53 8.31 -92.70 -0.77 14.76 16 39 H 0.11 5.23 5.64 -2.91 -0.02 5.22 16 40 H 0.13 3.90 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -70.84 346.62 3.42 -67.42 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: 0.36 Total: 23.46 kcal Atomic # 6 Polarization: -26.25 SS G_CDS: 5.40 Total: -20.85 kcal Atomic # 7 Polarization: -83.06 SS G_CDS: -4.06 Total: -87.13 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -0.25 Total: -29.82 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.96 Total: 46.92 kcal Total: -70.84 3.42 -67.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749968573.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.975 kcal (2) G-P(sol) polarization free energy of solvation -70.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds