Wall clock time and date at job start Fri Apr 10 2020 22:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38621 * 120.32630 * 2 1 4 4 C 1.38588 * 118.48883 * 180.02562 * 3 2 1 5 5 C 1.39308 * 119.05781 * 0.02562 * 4 3 2 6 6 C 1.48175 * 119.72273 * 179.97438 * 5 4 3 7 7 O 1.21512 * 119.99791 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99892 * 179.97438 * 6 5 4 9 9 C 1.46508 * 119.99798 * 180.02562 * 8 6 5 10 10 C 1.50698 * 109.46930 * 179.97438 * 9 8 6 11 11 C 1.38297 * 119.93202 * 89.99834 * 10 9 8 12 12 C 1.38101 * 120.07230 * 180.02562 * 11 10 9 13 13 C 1.38886 * 119.92536 * 359.97438 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47517 * 59.99414 * 19 17 15 21 21 H 1.48505 * 109.47332 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46989 * 299.99567 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38110 * 119.92772 * 359.48927 * 23 13 12 25 25 N 1.32718 * 120.55563 * 0.25139 * 5 4 3 26 26 C 1.31525 * 121.64111 * 359.48037 * 25 5 4 27 27 H 1.09001 * 109.47070 * 90.00312 * 1 2 3 28 28 H 1.08999 * 109.47297 * 210.00341 * 1 2 3 29 29 H 1.09001 * 109.46708 * 330.00373 * 1 2 3 30 30 H 1.08004 * 120.75425 * 359.97438 * 3 2 1 31 31 H 1.08002 * 120.46969 * 180.02562 * 4 3 2 32 32 H 0.96994 * 120.00117 * 359.97438 * 8 6 5 33 33 H 1.09003 * 109.46889 * 59.99529 * 9 8 6 34 34 H 1.09004 * 109.46798 * 299.99686 * 9 8 6 35 35 H 1.07999 * 119.96698 * 0.02562 * 11 10 9 36 36 H 1.07992 * 120.03608 * 179.97438 * 12 11 10 37 37 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 38 38 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 39 39 H 1.07996 * 119.96227 * 180.23396 * 24 23 13 40 40 H 1.07998 * 119.54978 * 180.27186 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1965 0.0000 4 6 3.5921 1.1521 -0.0005 5 6 4.2293 -0.0867 -0.0016 6 6 5.7097 -0.1514 -0.0028 7 8 6.3626 0.8734 -0.0033 8 7 6.3319 -1.3469 -0.0033 9 6 7.7956 -1.4109 -0.0039 10 6 8.2354 -2.8522 -0.0038 11 6 8.4363 -3.5125 -1.2022 12 6 8.8388 -4.8336 -1.2055 13 6 9.0424 -5.4988 -0.0034 14 8 9.4385 -6.7972 -0.0033 15 6 9.7275 -7.3491 -1.1990 16 1 9.5614 -6.7884 -2.1069 17 6 10.2380 -8.6368 -1.2631 18 7 10.4408 -9.3197 -0.1571 19 14 10.6390 -9.4011 -2.9196 20 1 11.6609 -8.5752 -3.6116 21 1 11.1675 -10.7740 -2.7164 22 1 9.4079 -9.4617 -3.7478 23 6 8.8347 -4.8346 1.1984 24 6 8.4369 -3.5121 1.1949 25 7 3.5216 -1.2095 -0.0071 26 6 2.2065 -1.1961 -0.0016 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.6847 2.1419 -0.0004 31 1 4.1693 2.0649 -0.0001 32 1 5.8107 -2.1649 -0.0025 33 1 8.1813 -0.9135 0.8861 34 1 8.1806 -0.9132 -0.8940 35 1 8.2782 -2.9946 -2.1366 36 1 8.9950 -5.3487 -2.1416 37 1 10.7975 -10.2206 -0.2019 38 1 8.9879 -5.3505 2.1347 39 1 8.2789 -2.9939 2.1292 40 1 1.6643 -2.1302 -0.0019 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753292190.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:47 Heat of formation + Delta-G solvation = -9.117670 kcal Electronic energy + Delta-G solvation = -23555.750587 eV Core-core repulsion = 19914.944019 eV Total energy + Delta-G solvation = -3640.806567 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.84037 -39.35819 -38.82184 -36.84030 -34.54896 -33.95838 -32.34755 -32.23095 -30.28168 -30.04887 -28.06699 -25.88184 -24.81103 -24.06398 -22.87277 -22.03207 -20.76128 -20.58821 -18.35883 -18.03539 -17.12140 -16.96041 -15.60828 -15.51927 -15.48131 -15.22277 -14.75867 -14.58910 -14.31540 -14.17932 -13.78270 -13.62832 -13.52753 -13.32923 -13.10456 -12.92527 -12.76111 -12.64121 -12.11921 -12.06200 -11.66872 -11.38912 -10.95980 -10.77927 -10.69619 -10.48548 -10.37784 -10.18887 -9.74129 -9.41167 -9.32506 -8.91985 -8.88940 -8.25618 -7.30620 -6.51037 -4.09876 0.37077 0.90386 2.08421 2.16022 2.62135 3.09611 3.10694 3.14203 3.26722 3.64325 3.92124 3.96274 4.36426 4.43736 4.51696 4.53737 4.70147 4.96089 5.03652 5.10929 5.16706 5.19452 5.26529 5.40543 5.43382 5.51268 5.66531 5.68508 5.80941 5.82208 5.92362 6.14675 6.26568 6.36978 6.49431 6.62444 6.82928 6.97564 7.15974 7.29547 7.36866 7.38148 7.68901 7.74531 7.93657 8.19344 8.94181 9.62592 10.66447 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.020070 B = 0.002346 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.761244 B =11932.848604 C =12610.830563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.119 4.119 3 C -0.086 4.086 4 C -0.109 4.109 5 C 0.074 3.926 6 C 0.565 3.435 7 O -0.543 6.543 8 N -0.699 5.699 9 C 0.177 3.823 10 C -0.215 4.215 11 C -0.049 4.049 12 C -0.237 4.237 13 C 0.161 3.839 14 O -0.173 6.173 15 C -0.394 4.394 16 H 0.093 0.907 17 C 0.040 3.960 18 N -0.860 5.860 19 Si 0.942 3.058 20 H -0.269 1.269 21 H -0.277 1.277 22 H -0.269 1.269 23 C -0.195 4.195 24 C -0.053 4.053 25 N -0.452 5.452 26 C 0.098 3.902 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.141 0.859 31 H 0.148 0.852 32 H 0.413 0.587 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.108 0.892 36 H 0.128 0.872 37 H 0.272 0.728 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.148 17.257 -0.392 24.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.122 4.122 3 C -0.112 4.112 4 C -0.129 4.129 5 C -0.064 4.064 6 C 0.350 3.650 7 O -0.420 6.420 8 N -0.350 5.350 9 C 0.055 3.945 10 C -0.216 4.216 11 C -0.068 4.068 12 C -0.256 4.256 13 C 0.106 3.894 14 O -0.076 6.076 15 C -0.470 4.470 16 H 0.110 0.890 17 C -0.165 4.165 18 N -0.494 5.494 19 Si 0.766 3.234 20 H -0.194 1.194 21 H -0.202 1.202 22 H -0.194 1.194 23 C -0.214 4.214 24 C -0.072 4.072 25 N -0.163 5.163 26 C -0.062 4.062 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.158 0.842 31 H 0.166 0.834 32 H 0.249 0.751 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.126 0.874 36 H 0.146 0.854 37 H 0.082 0.918 38 H 0.136 0.864 39 H 0.131 0.869 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -16.016 16.755 -0.149 23.179 hybrid contribution -0.517 -0.043 -0.887 1.027 sum -16.533 16.711 -1.035 23.530 Atomic orbital electron populations 1.20785 0.89792 1.03506 1.02957 1.21194 0.97925 0.94251 0.98790 1.21518 0.93629 0.98517 0.97528 1.22132 0.94889 0.99099 0.96814 1.21244 0.94471 0.89702 1.00952 1.17919 0.85726 0.84172 0.77226 1.90767 1.65925 1.34277 1.51064 1.46232 1.08201 1.08408 1.72130 1.20066 0.78385 0.94058 1.02011 1.19177 1.13427 0.95234 0.93773 1.20637 0.95971 0.93791 0.96421 1.21151 1.10313 0.95645 0.98490 1.19440 0.91496 0.85123 0.93314 1.83977 1.71959 1.18526 1.33104 1.21309 1.44004 0.98585 0.83060 0.88976 1.25317 0.96167 0.95601 0.99382 1.70025 1.40863 1.11403 1.27119 0.85764 0.79173 0.78394 0.80025 1.19430 1.20224 1.19438 1.20205 1.10202 0.94720 0.96305 1.20531 0.96710 0.93377 0.96565 1.67586 1.08728 1.30324 1.09643 1.22746 0.89300 0.97836 0.96278 0.90462 0.90754 0.91060 0.84165 0.83407 0.75078 0.91255 0.91295 0.87387 0.85410 0.91843 0.86355 0.86945 0.82034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.47 10.03 36.01 0.36 -0.11 16 2 C -0.12 -0.87 5.91 -104.36 -0.62 -1.49 16 3 C -0.09 -0.65 9.85 -39.31 -0.39 -1.04 16 4 C -0.11 -1.10 9.63 -39.05 -0.38 -1.48 16 5 C 0.07 0.93 6.75 -83.00 -0.56 0.37 16 6 C 0.57 8.25 7.81 -12.18 -0.10 8.15 16 7 O -0.54 -9.13 16.32 5.35 0.09 -9.04 16 8 N -0.70 -9.92 5.54 -62.32 -0.35 -10.26 16 9 C 0.18 2.59 5.80 -5.19 -0.03 2.56 16 10 C -0.21 -3.57 5.25 -104.58 -0.55 -4.12 16 11 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 12 C -0.24 -5.00 9.17 -39.39 -0.36 -5.36 16 13 C 0.16 3.79 6.65 -39.11 -0.26 3.53 16 14 O -0.17 -4.85 9.76 0.05 0.00 -4.85 16 15 C -0.39 -10.80 9.49 30.89 0.29 -10.50 16 16 H 0.09 2.33 5.20 -52.49 -0.27 2.05 16 17 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 18 N -0.86 -24.84 13.67 55.48 0.76 -24.09 16 19 Si 0.94 20.19 29.55 -169.99 -5.02 15.16 16 20 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 21 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 23 C -0.19 -4.01 9.99 -39.39 -0.39 -4.40 16 24 C -0.05 -0.92 9.69 -39.60 -0.38 -1.30 16 25 N -0.45 -5.38 9.54 -9.80 -0.09 -5.48 16 26 C 0.10 0.88 10.86 -17.56 -0.19 0.69 16 27 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.25 8.09 -51.93 -0.42 -0.17 16 29 H 0.07 0.23 8.09 -51.93 -0.42 -0.19 16 30 H 0.14 0.66 8.06 -52.48 -0.42 0.23 16 31 H 0.15 1.42 7.64 -52.49 -0.40 1.02 16 32 H 0.41 5.76 7.79 -40.82 -0.32 5.44 16 33 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 34 H 0.07 1.00 8.09 -51.93 -0.42 0.58 16 35 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 36 H 0.13 2.70 5.64 -52.49 -0.30 2.41 16 37 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 38 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 39 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 40 H 0.16 1.05 8.06 -52.49 -0.42 0.62 16 LS Contribution 353.14 15.07 5.32 5.32 Total: -1.00 -32.11 353.14 -7.96 -40.07 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -4.64 Total: 7.91 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -4.03 Total: -14.75 kcal Atomic # 7 Polarization: -40.15 SS G_CDS: 0.32 Total: -39.83 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.09 Total: -13.89 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.11 -7.96 -40.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753292190.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.953 kcal (2) G-P(sol) polarization free energy of solvation -32.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds