Wall clock time and date at job start Fri Apr 10 2020 22:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38621 * 120.32630 * 2 1 4 4 C 1.38588 * 118.48883 * 180.02562 * 3 2 1 5 5 C 1.39308 * 119.05781 * 0.02562 * 4 3 2 6 6 C 1.48175 * 119.72273 * 179.97438 * 5 4 3 7 7 O 1.21512 * 119.99791 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99892 * 179.97438 * 6 5 4 9 9 C 1.46508 * 119.99798 * 180.02562 * 8 6 5 10 10 C 1.50698 * 109.46930 * 179.97438 * 9 8 6 11 11 C 1.38297 * 119.93202 * 89.99834 * 10 9 8 12 12 C 1.38101 * 120.07230 * 180.02562 * 11 10 9 13 13 C 1.38886 * 119.92536 * 359.97438 * 12 11 10 14 14 O 1.35750 * 120.06440 * 180.02562 * 13 12 11 15 15 C 1.34828 * 117.00075 * 5.53777 * 14 13 12 16 16 H 1.07993 * 120.00518 * 354.94289 * 15 14 13 17 17 C 1.38663 * 119.99751 * 174.94575 * 15 14 13 18 18 N 1.31556 * 120.00220 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99821 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47517 * 59.99414 * 19 17 15 21 21 H 1.48505 * 109.47332 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46989 * 299.99567 * 19 17 15 23 23 C 1.38874 * 119.86623 * 0.27854 * 13 12 11 24 24 C 1.38110 * 119.92772 * 359.48927 * 23 13 12 25 25 N 1.32718 * 120.55563 * 0.25139 * 5 4 3 26 26 C 1.31525 * 121.64111 * 359.48037 * 25 5 4 27 27 H 1.09001 * 109.47070 * 90.00312 * 1 2 3 28 28 H 1.08999 * 109.47297 * 210.00341 * 1 2 3 29 29 H 1.09001 * 109.46708 * 330.00373 * 1 2 3 30 30 H 1.08004 * 120.75425 * 359.97438 * 3 2 1 31 31 H 1.08002 * 120.46969 * 180.02562 * 4 3 2 32 32 H 0.96994 * 120.00117 * 359.97438 * 8 6 5 33 33 H 1.09003 * 109.46889 * 59.99529 * 9 8 6 34 34 H 1.09004 * 109.46798 * 299.99686 * 9 8 6 35 35 H 1.07999 * 119.96698 * 0.02562 * 11 10 9 36 36 H 1.07992 * 120.03608 * 179.97438 * 12 11 10 37 37 H 0.96996 * 120.00178 * 179.97438 * 18 17 15 38 38 H 1.07996 * 120.03745 * 179.72497 * 23 13 12 39 39 H 1.07996 * 119.96227 * 180.23396 * 24 23 13 40 40 H 1.07998 * 119.54978 * 180.27186 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2069 1.1965 0.0000 4 6 3.5921 1.1521 -0.0005 5 6 4.2293 -0.0867 -0.0016 6 6 5.7097 -0.1514 -0.0028 7 8 6.3626 0.8734 -0.0033 8 7 6.3319 -1.3469 -0.0033 9 6 7.7956 -1.4109 -0.0039 10 6 8.2354 -2.8522 -0.0038 11 6 8.4363 -3.5125 -1.2022 12 6 8.8388 -4.8336 -1.2055 13 6 9.0424 -5.4988 -0.0034 14 8 9.4385 -6.7972 -0.0033 15 6 9.7275 -7.3491 -1.1990 16 1 9.5614 -6.7884 -2.1069 17 6 10.2380 -8.6368 -1.2631 18 7 10.4408 -9.3197 -0.1571 19 14 10.6390 -9.4011 -2.9196 20 1 11.6609 -8.5752 -3.6116 21 1 11.1675 -10.7740 -2.7164 22 1 9.4079 -9.4617 -3.7478 23 6 8.8347 -4.8346 1.1984 24 6 8.4369 -3.5121 1.1949 25 7 3.5216 -1.2095 -0.0071 26 6 2.2065 -1.1961 -0.0016 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.6847 2.1419 -0.0004 31 1 4.1693 2.0649 -0.0001 32 1 5.8107 -2.1649 -0.0025 33 1 8.1813 -0.9135 0.8861 34 1 8.1806 -0.9132 -0.8940 35 1 8.2782 -2.9946 -2.1366 36 1 8.9950 -5.3487 -2.1416 37 1 10.7975 -10.2206 -0.2019 38 1 8.9879 -5.3505 2.1347 39 1 8.2789 -2.9939 2.1292 40 1 1.6643 -2.1302 -0.0019 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753292190.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:46 Heat of formation + Delta-G solvation = -29.983946 kcal Electronic energy + Delta-G solvation = -23556.655416 eV Core-core repulsion = 19914.944019 eV Total energy + Delta-G solvation = -3641.711397 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.67694 -40.87459 -40.04302 -38.49394 -35.79298 -34.67802 -34.25438 -32.93965 -31.86720 -31.48319 -28.83901 -27.59967 -26.24539 -24.78432 -23.68544 -23.65789 -22.18572 -21.68520 -19.89853 -19.37178 -18.78501 -17.90479 -16.73259 -16.66705 -16.45937 -16.26426 -16.15031 -16.02670 -15.60691 -15.48376 -15.18137 -14.96378 -14.62394 -14.39718 -14.24143 -14.08445 -13.72221 -13.53297 -13.27545 -13.25067 -13.03943 -12.66616 -12.55654 -12.39098 -12.27781 -12.14220 -11.46593 -11.21959 -10.85888 -10.81011 -10.54511 -10.23323 -9.88292 -9.82264 -9.03141 -8.48531 -6.16916 -0.39017 0.24181 0.51910 0.56192 1.35513 1.45430 1.51517 1.66917 2.14878 2.17256 2.82352 2.83398 3.10597 3.21783 3.47322 3.77413 3.85272 3.86916 3.95108 4.00123 4.00526 4.15465 4.28884 4.42175 4.54599 4.66120 4.69811 4.78128 4.83560 4.86741 5.01586 5.03256 5.13094 5.19291 5.24600 5.27000 5.34109 5.50338 5.65497 5.67316 5.72738 6.00615 6.13659 6.39110 6.78091 6.95909 7.09636 7.74693 8.74020 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.020070 B = 0.002346 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.761244 B =11932.848604 C =12610.830563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.105 4.105 3 C -0.084 4.084 4 C -0.113 4.113 5 C 0.042 3.958 6 C 0.566 3.434 7 O -0.571 6.571 8 N -0.698 5.698 9 C 0.181 3.819 10 C -0.185 4.185 11 C -0.046 4.046 12 C -0.243 4.243 13 C 0.124 3.876 14 O -0.227 6.227 15 C -0.415 4.415 16 H 0.103 0.897 17 C -0.022 4.022 18 N -0.918 5.918 19 Si 1.018 2.982 20 H -0.258 1.258 21 H -0.272 1.272 22 H -0.257 1.257 23 C -0.204 4.204 24 C -0.044 4.044 25 N -0.476 5.476 26 C 0.085 3.915 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.174 0.826 31 H 0.148 0.852 32 H 0.414 0.586 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.138 0.862 36 H 0.122 0.878 37 H 0.273 0.727 38 H 0.117 0.883 39 H 0.147 0.853 40 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.707 19.901 -1.401 28.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.107 4.107 3 C -0.109 4.109 4 C -0.134 4.134 5 C -0.095 4.095 6 C 0.352 3.648 7 O -0.451 6.451 8 N -0.348 5.348 9 C 0.059 3.941 10 C -0.186 4.186 11 C -0.064 4.064 12 C -0.262 4.262 13 C 0.072 3.928 14 O -0.133 6.133 15 C -0.491 4.491 16 H 0.121 0.879 17 C -0.219 4.219 18 N -0.556 5.556 19 Si 0.837 3.163 20 H -0.182 1.182 21 H -0.197 1.197 22 H -0.181 1.181 23 C -0.223 4.223 24 C -0.062 4.062 25 N -0.187 5.187 26 C -0.076 4.076 27 H 0.107 0.893 28 H 0.103 0.897 29 H 0.105 0.895 30 H 0.191 0.809 31 H 0.166 0.834 32 H 0.251 0.749 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.156 0.844 36 H 0.140 0.860 37 H 0.082 0.918 38 H 0.135 0.865 39 H 0.164 0.836 40 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -18.601 19.456 -1.154 26.942 hybrid contribution 0.028 -0.488 -0.472 0.679 sum -18.573 18.969 -1.626 26.598 Atomic orbital electron populations 1.20888 0.87133 1.04835 1.04037 1.21586 0.99698 0.93410 0.96040 1.21912 0.92569 1.00187 0.96229 1.22257 0.96235 0.98223 0.96695 1.20996 0.93300 0.90930 1.04228 1.18243 0.86828 0.83535 0.76201 1.90740 1.66864 1.35010 1.52461 1.46095 1.07769 1.08638 1.72341 1.20016 0.78974 0.92145 1.02965 1.19477 1.09998 0.96025 0.93076 1.20936 0.94693 0.92481 0.98308 1.21240 1.10594 0.96934 0.97455 1.19982 0.92801 0.84644 0.95325 1.83947 1.74965 1.20803 1.33622 1.21800 1.44408 0.99307 0.83606 0.87945 1.26596 0.95778 0.95849 1.03722 1.70171 1.43505 1.12046 1.29878 0.84653 0.79458 0.77401 0.74762 1.18222 1.19652 1.18086 1.20439 1.10381 0.96009 0.95481 1.20878 0.94920 0.91980 0.98431 1.67497 1.10210 1.30416 1.10572 1.23235 0.88589 0.99650 0.96083 0.89262 0.89732 0.89525 0.80865 0.83439 0.74898 0.90320 0.90567 0.84392 0.86029 0.91760 0.86526 0.83570 0.79980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.46 10.03 71.24 0.71 0.25 16 2 C -0.11 -1.19 5.91 -19.69 -0.12 -1.31 16 3 C -0.08 -1.01 9.85 22.45 0.22 -0.79 16 4 C -0.11 -2.12 9.63 22.61 0.22 -1.90 16 5 C 0.04 1.01 6.75 41.91 0.28 1.30 16 6 C 0.57 15.91 7.81 86.88 0.68 16.59 16 7 O -0.57 -18.69 16.32 -3.75 -0.06 -18.75 16 8 N -0.70 -18.59 5.54 -469.37 -2.60 -21.19 16 9 C 0.18 4.84 5.80 85.63 0.50 5.34 16 10 C -0.18 -5.72 5.25 -19.84 -0.10 -5.82 16 11 C -0.05 -1.55 9.69 22.25 0.22 -1.33 16 12 C -0.24 -10.35 9.17 22.39 0.21 -10.14 16 13 C 0.12 6.04 6.65 22.58 0.15 6.19 16 14 O -0.23 -13.51 9.76 -22.72 -0.22 -13.73 16 15 C -0.42 -23.89 9.49 67.92 0.64 -23.25 16 16 H 0.10 5.38 5.20 -2.91 -0.02 5.37 16 17 C -0.02 -1.21 5.49 84.84 0.47 -0.75 16 18 N -0.92 -55.93 13.67 21.62 0.30 -55.63 16 19 Si 1.02 42.40 29.55 68.60 2.03 44.43 16 20 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 21 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 22 H -0.26 -10.01 7.11 99.48 0.71 -9.30 16 23 C -0.20 -8.48 9.99 22.39 0.22 -8.26 16 24 C -0.04 -1.44 9.69 22.25 0.22 -1.22 16 25 N -0.48 -10.70 9.54 -184.90 -1.76 -12.46 16 26 C 0.08 1.33 10.86 84.82 0.92 2.25 16 27 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.08 0.23 8.09 -2.39 -0.02 0.21 16 29 H 0.09 0.15 8.09 -2.39 -0.02 0.13 16 30 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 31 H 0.15 2.67 7.64 -2.91 -0.02 2.65 16 32 H 0.41 10.91 7.79 -92.71 -0.72 10.18 16 33 H 0.08 2.03 8.08 -2.39 -0.02 2.01 16 34 H 0.08 1.99 8.09 -2.39 -0.02 1.98 16 35 H 0.14 3.88 8.06 -2.91 -0.02 3.86 16 36 H 0.12 5.26 5.64 -2.91 -0.02 5.24 16 37 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 38 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 39 H 0.15 3.87 8.06 -2.91 -0.02 3.85 16 40 H 0.18 1.90 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -74.86 353.14 3.47 -71.39 By element: Atomic # 1 Polarization: 28.44 SS G_CDS: 0.36 Total: 28.80 kcal Atomic # 6 Polarization: -28.29 SS G_CDS: 5.43 Total: -22.86 kcal Atomic # 7 Polarization: -85.21 SS G_CDS: -4.07 Total: -89.28 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -0.28 Total: -32.48 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Total: -74.86 3.47 -71.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753292190.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.408 kcal (2) G-P(sol) polarization free energy of solvation -74.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds