Wall clock time and date at job start Fri Apr 10 2020 22:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38082 * 119.52558 * 2 1 4 4 C 1.38777 * 119.35834 * 180.02562 * 3 2 1 5 5 C 1.38809 * 118.44313 * 0.02562 * 4 3 2 6 6 O 1.35981 * 120.49097 * 180.02562 * 5 4 3 7 7 C 1.39462 * 119.00335 * 359.97438 * 5 4 3 8 8 N 1.39581 * 119.72060 * 180.02562 * 7 5 4 9 9 C 1.34784 * 119.99747 * 179.97438 * 8 7 5 10 10 O 1.21281 * 119.99942 * 0.02562 * 9 8 7 11 11 C 1.50701 * 119.99890 * 179.97438 * 9 8 7 12 12 C 1.50697 * 109.47024 * 180.02562 * 11 9 8 13 13 C 1.37635 * 120.13029 * 265.00398 * 12 11 9 14 14 C 1.38616 * 120.25180 * 180.29925 * 13 12 11 15 15 C 1.38657 * 120.49769 * 359.43991 * 14 13 12 16 16 C 1.37599 * 120.24996 * 0.55619 * 15 14 13 17 17 C 1.40698 * 120.12726 * 85.02044 * 12 11 9 18 18 C 1.41401 * 120.24306 * 359.95711 * 17 12 11 19 19 H 1.07996 * 120.00140 * 329.78968 * 18 17 12 20 20 C 1.39943 * 119.99611 * 149.79577 * 18 17 12 21 21 N 1.30828 * 120.00177 * 162.08912 * 20 18 17 22 22 Si 1.86803 * 120.00186 * 342.08044 * 20 18 17 23 23 H 1.48499 * 109.47049 * 95.39710 * 22 20 18 24 24 H 1.48502 * 109.46957 * 215.39592 * 22 20 18 25 25 H 1.48500 * 109.46884 * 335.39299 * 22 20 18 26 26 N 1.31955 * 119.51943 * 180.29075 * 2 1 3 27 27 H 1.08997 * 109.47295 * 89.99635 * 1 2 3 28 28 H 1.08992 * 109.47143 * 210.00260 * 1 2 3 29 29 H 1.09005 * 109.46844 * 330.00394 * 1 2 3 30 30 H 1.08006 * 120.32326 * 0.02562 * 3 2 1 31 31 H 1.07998 * 120.78097 * 179.97438 * 4 3 2 32 32 H 0.96701 * 113.99618 * 269.97319 * 6 5 4 33 33 H 0.97000 * 120.00682 * 0.02562 * 8 7 5 34 34 H 1.08999 * 109.47141 * 60.00010 * 11 9 8 35 35 H 1.09003 * 109.46955 * 300.00132 * 11 9 8 36 36 H 1.08001 * 119.87405 * 0.02562 * 13 12 11 37 37 H 1.07997 * 119.74655 * 179.69995 * 14 13 12 38 38 H 1.07996 * 119.87456 * 180.30205 * 15 14 13 39 39 H 1.07999 * 120.12771 * 179.75037 * 16 15 14 40 40 H 0.96989 * 120.00516 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2015 0.0000 4 6 3.5753 1.1974 -0.0005 5 6 4.2328 -0.0250 -0.0016 6 8 5.5916 -0.0776 -0.0017 7 6 3.4790 -1.1983 -0.0016 8 7 4.1248 -2.4358 -0.0021 9 6 3.4017 -3.5732 -0.0015 10 8 2.1900 -3.5215 -0.0010 11 6 4.0989 -4.9093 -0.0027 12 6 3.0716 -6.0119 -0.0024 13 6 2.6775 -6.5886 1.1836 14 6 1.7374 -7.6072 1.1862 15 6 1.1751 -8.0490 -0.0018 16 6 1.5541 -7.4870 -1.1992 17 6 2.5120 -6.4560 -1.2144 18 6 2.9089 -5.8706 -2.4389 19 1 3.2216 -4.8373 -2.4671 20 6 2.8962 -6.6303 -3.6141 21 7 2.9163 -6.0343 -4.7786 22 14 2.8510 -8.4954 -3.5203 23 1 1.4460 -8.9628 -3.6336 24 1 3.6538 -9.0665 -4.6314 25 1 3.4172 -8.9395 -2.2213 26 7 2.1572 -1.1482 -0.0058 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8901 0.5138 30 1 1.6450 2.1354 0.0004 31 1 4.1307 2.1237 -0.0010 32 1 5.9846 -0.0924 -0.8851 33 1 5.0939 -2.4772 -0.0021 34 1 4.7235 -4.9939 0.8866 35 1 4.7215 -4.9934 -0.8934 36 1 3.1056 -6.2492 2.1152 37 1 1.4376 -8.0573 2.1211 38 1 0.4399 -8.8400 0.0125 39 1 1.1178 -7.8353 -2.1237 40 1 2.9079 -6.5607 -5.5931 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753472057.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:49 Heat of formation + Delta-G solvation = -14.788846 kcal Electronic energy + Delta-G solvation = -25229.745678 eV Core-core repulsion = 21588.693190 eV Total energy + Delta-G solvation = -3641.052488 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.82419 -39.01486 -37.54667 -37.38936 -34.52340 -33.56640 -32.06542 -31.88682 -30.94855 -30.29009 -27.44631 -26.49818 -24.89311 -23.47416 -22.21948 -21.38450 -20.59681 -19.46643 -18.57665 -17.38595 -17.25367 -16.91930 -15.81805 -15.62539 -15.60631 -15.04101 -14.45231 -14.37360 -14.09066 -13.70071 -13.55589 -13.40631 -13.28786 -12.68978 -12.51472 -12.29828 -12.14117 -12.12273 -11.88158 -11.41390 -11.35171 -11.18504 -10.78807 -10.71387 -10.39722 -10.23397 -9.77119 -9.68606 -9.54507 -9.48012 -9.10449 -8.67924 -7.95455 -7.57327 -7.48280 -6.91474 -4.45786 1.02846 1.31182 2.55470 2.74335 3.13850 3.15600 3.24545 3.27310 3.34182 3.79378 4.00706 4.07212 4.42550 4.55130 4.71537 5.01493 5.14527 5.35514 5.44335 5.58838 5.61535 5.71838 5.83375 5.89142 5.98054 6.04603 6.10747 6.11310 6.21300 6.28026 6.41922 6.59319 6.74459 6.77131 6.97669 7.23124 7.41190 7.44353 7.54992 7.68959 7.77955 7.93108 8.16700 8.24848 8.38318 8.70572 8.79505 8.84672 10.10789 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.015544 B = 0.004079 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.874195 B = 6862.319431 C = 7241.870099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.156 3.844 3 C -0.203 4.203 4 C -0.070 4.070 5 C -0.003 4.003 6 O -0.489 6.489 7 C 0.363 3.637 8 N -0.665 5.665 9 C 0.501 3.499 10 O -0.448 6.448 11 C -0.071 4.071 12 C -0.170 4.170 13 C -0.067 4.067 14 C -0.242 4.242 15 C -0.079 4.079 16 C -0.232 4.232 17 C 0.111 3.889 18 C -0.444 4.444 19 H 0.088 0.912 20 C 0.085 3.915 21 N -0.810 5.810 22 Si 0.910 3.090 23 H -0.271 1.271 24 H -0.292 1.292 25 H -0.243 1.243 26 N -0.459 5.459 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.135 0.865 31 H 0.139 0.861 32 H 0.385 0.615 33 H 0.416 0.584 34 H 0.081 0.919 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.920 11.398 6.242 13.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.017 3.983 3 C -0.225 4.225 4 C -0.096 4.096 5 C -0.053 4.053 6 O -0.297 6.297 7 C 0.129 3.871 8 N -0.313 5.313 9 C 0.287 3.713 10 O -0.314 6.314 11 C -0.111 4.111 12 C -0.171 4.171 13 C -0.085 4.085 14 C -0.261 4.261 15 C -0.097 4.097 16 C -0.251 4.251 17 C 0.108 3.892 18 C -0.472 4.472 19 H 0.106 0.894 20 C -0.134 4.134 21 N -0.435 5.435 22 Si 0.737 3.263 23 H -0.197 1.197 24 H -0.220 1.220 25 H -0.167 1.167 26 N -0.176 5.176 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.153 0.847 31 H 0.157 0.843 32 H 0.240 0.760 33 H 0.252 0.748 34 H 0.100 0.900 35 H 0.121 0.879 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.117 0.883 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.534 10.550 6.554 12.676 hybrid contribution 1.053 0.092 -0.771 1.308 sum 3.588 10.642 5.783 12.632 Atomic orbital electron populations 1.20720 0.88579 1.03441 1.03347 1.21260 0.97221 0.87341 0.92445 1.21741 0.93930 0.99266 1.07546 1.21591 0.94560 0.97166 0.96320 1.18778 0.83664 0.91675 1.11216 1.84892 1.15282 1.96073 1.33447 1.19016 0.88959 0.85664 0.93475 1.44038 1.10831 1.03364 1.73027 1.21517 0.88681 0.85011 0.76068 1.90794 1.13340 1.86072 1.41148 1.20308 0.98063 0.89185 1.03501 1.19021 1.02861 1.01629 0.93637 1.20435 0.96617 0.95835 0.95628 1.20330 1.05355 1.04027 0.96368 1.20604 0.97965 0.97974 0.93184 1.20995 1.03508 1.04227 0.96399 1.17474 0.89130 0.90008 0.92607 1.19398 1.38533 0.99572 0.89729 0.89449 1.26156 0.90864 1.01765 0.94580 1.69708 1.35656 1.39150 0.98951 0.86339 0.78809 0.82123 0.79069 1.19741 1.21991 1.16661 1.67644 1.06190 1.28660 1.15153 0.90175 0.89981 0.90830 0.84721 0.84288 0.76036 0.74769 0.90029 0.87938 0.89069 0.88984 0.88991 0.88320 0.90600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.27 10.16 36.01 0.37 -0.90 16 2 C 0.16 2.33 6.78 -82.60 -0.56 1.77 16 3 C -0.20 -2.38 9.73 -39.44 -0.38 -2.77 16 4 C -0.07 -0.80 10.12 -39.17 -0.40 -1.20 16 5 C 0.00 -0.04 6.76 -38.91 -0.26 -0.30 16 6 O -0.49 -5.21 12.77 -19.68 -0.25 -5.46 16 7 C 0.36 6.12 7.45 -154.44 -1.15 4.97 16 8 N -0.67 -10.91 5.39 -11.29 -0.06 -10.97 16 9 C 0.50 10.17 7.41 -10.98 -0.08 10.09 16 10 O -0.45 -11.11 14.29 5.56 0.08 -11.03 16 11 C -0.07 -1.35 5.19 -29.04 -0.15 -1.50 16 12 C -0.17 -3.92 4.43 -103.92 -0.46 -4.38 16 13 C -0.07 -1.46 9.66 -39.66 -0.38 -1.84 16 14 C -0.24 -5.25 10.05 -39.29 -0.39 -5.64 16 15 C -0.08 -1.80 10.02 -39.66 -0.40 -2.19 16 16 C -0.23 -5.83 7.17 -38.87 -0.28 -6.11 16 17 C 0.11 2.86 5.10 -106.82 -0.54 2.31 16 18 C -0.44 -11.99 8.55 -37.74 -0.32 -12.32 16 19 H 0.09 2.49 7.00 -52.49 -0.37 2.13 16 20 C 0.08 2.23 5.41 -17.34 -0.09 2.14 16 21 N -0.81 -21.76 13.93 55.55 0.77 -20.98 16 22 Si 0.91 20.94 24.52 -169.99 -4.17 16.77 16 23 H -0.27 -6.16 6.71 56.52 0.38 -5.78 16 24 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.24 -5.69 6.86 56.52 0.39 -5.30 16 26 N -0.46 -8.63 7.79 -8.46 -0.07 -8.70 16 27 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.07 0.65 8.07 -51.93 -0.42 0.23 16 30 H 0.13 1.14 8.06 -52.48 -0.42 0.71 16 31 H 0.14 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.38 2.45 9.06 45.56 0.41 2.86 16 33 H 0.42 5.23 8.05 -40.82 -0.33 4.90 16 34 H 0.08 1.26 8.05 -51.93 -0.42 0.84 16 35 H 0.10 1.92 7.13 -51.93 -0.37 1.55 16 36 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 37 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 38 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 39 H 0.10 2.47 4.77 -52.49 -0.25 2.22 16 40 H 0.28 6.92 8.30 -40.82 -0.34 6.58 16 LS Contribution 340.34 15.07 5.13 5.13 Total: -1.00 -34.30 340.34 -7.93 -42.23 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -3.87 Total: 10.89 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -5.49 Total: -17.88 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.65 Total: -40.66 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: -0.17 Total: -16.49 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.17 Total: 16.77 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -34.30 -7.93 -42.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753472057.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.446 kcal (2) G-P(sol) polarization free energy of solvation -34.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds