Wall clock time and date at job start Fri Apr 10 2020 22:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38082 * 119.52558 * 2 1 4 4 C 1.38777 * 119.35834 * 180.02562 * 3 2 1 5 5 C 1.38809 * 118.44313 * 0.02562 * 4 3 2 6 6 O 1.35981 * 120.49097 * 180.02562 * 5 4 3 7 7 C 1.39462 * 119.00335 * 359.97438 * 5 4 3 8 8 N 1.39581 * 119.72060 * 180.02562 * 7 5 4 9 9 C 1.34784 * 119.99747 * 179.97438 * 8 7 5 10 10 O 1.21281 * 119.99942 * 0.02562 * 9 8 7 11 11 C 1.50701 * 119.99890 * 179.97438 * 9 8 7 12 12 C 1.50697 * 109.47024 * 180.02562 * 11 9 8 13 13 C 1.37635 * 120.13029 * 265.00398 * 12 11 9 14 14 C 1.38616 * 120.25180 * 180.29925 * 13 12 11 15 15 C 1.38657 * 120.49769 * 359.43991 * 14 13 12 16 16 C 1.37599 * 120.24996 * 0.55619 * 15 14 13 17 17 C 1.40698 * 120.12726 * 85.02044 * 12 11 9 18 18 C 1.41401 * 120.24306 * 359.95711 * 17 12 11 19 19 H 1.07996 * 120.00140 * 329.78968 * 18 17 12 20 20 C 1.39943 * 119.99611 * 149.79577 * 18 17 12 21 21 N 1.30828 * 120.00177 * 162.08912 * 20 18 17 22 22 Si 1.86803 * 120.00186 * 342.08044 * 20 18 17 23 23 H 1.48499 * 109.47049 * 95.39710 * 22 20 18 24 24 H 1.48502 * 109.46957 * 215.39592 * 22 20 18 25 25 H 1.48500 * 109.46884 * 335.39299 * 22 20 18 26 26 N 1.31955 * 119.51943 * 180.29075 * 2 1 3 27 27 H 1.08997 * 109.47295 * 89.99635 * 1 2 3 28 28 H 1.08992 * 109.47143 * 210.00260 * 1 2 3 29 29 H 1.09005 * 109.46844 * 330.00394 * 1 2 3 30 30 H 1.08006 * 120.32326 * 0.02562 * 3 2 1 31 31 H 1.07998 * 120.78097 * 179.97438 * 4 3 2 32 32 H 0.96701 * 113.99618 * 269.97319 * 6 5 4 33 33 H 0.97000 * 120.00682 * 0.02562 * 8 7 5 34 34 H 1.08999 * 109.47141 * 60.00010 * 11 9 8 35 35 H 1.09003 * 109.46955 * 300.00132 * 11 9 8 36 36 H 1.08001 * 119.87405 * 0.02562 * 13 12 11 37 37 H 1.07997 * 119.74655 * 179.69995 * 14 13 12 38 38 H 1.07996 * 119.87456 * 180.30205 * 15 14 13 39 39 H 1.07999 * 120.12771 * 179.75037 * 16 15 14 40 40 H 0.96989 * 120.00516 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2015 0.0000 4 6 3.5753 1.1974 -0.0005 5 6 4.2328 -0.0250 -0.0016 6 8 5.5916 -0.0776 -0.0017 7 6 3.4790 -1.1983 -0.0016 8 7 4.1248 -2.4358 -0.0021 9 6 3.4017 -3.5732 -0.0015 10 8 2.1900 -3.5215 -0.0010 11 6 4.0989 -4.9093 -0.0027 12 6 3.0716 -6.0119 -0.0024 13 6 2.6775 -6.5886 1.1836 14 6 1.7374 -7.6072 1.1862 15 6 1.1751 -8.0490 -0.0018 16 6 1.5541 -7.4870 -1.1992 17 6 2.5120 -6.4560 -1.2144 18 6 2.9089 -5.8706 -2.4389 19 1 3.2216 -4.8373 -2.4671 20 6 2.8962 -6.6303 -3.6141 21 7 2.9163 -6.0343 -4.7786 22 14 2.8510 -8.4954 -3.5203 23 1 1.4460 -8.9628 -3.6336 24 1 3.6538 -9.0665 -4.6314 25 1 3.4172 -8.9395 -2.2213 26 7 2.1572 -1.1482 -0.0058 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8899 0.5138 29 1 -0.3633 0.8901 0.5138 30 1 1.6450 2.1354 0.0004 31 1 4.1307 2.1237 -0.0010 32 1 5.9846 -0.0924 -0.8851 33 1 5.0939 -2.4772 -0.0021 34 1 4.7235 -4.9939 0.8866 35 1 4.7215 -4.9934 -0.8934 36 1 3.1056 -6.2492 2.1152 37 1 1.4376 -8.0573 2.1211 38 1 0.4399 -8.8400 0.0125 39 1 1.1178 -7.8353 -2.1237 40 1 2.9079 -6.5607 -5.5931 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753472057.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:49 Heat of formation + Delta-G solvation = -39.397763 kcal Electronic energy + Delta-G solvation = -25230.812800 eV Core-core repulsion = 21588.693190 eV Total energy + Delta-G solvation = -3642.119611 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.98003 -40.50600 -39.24399 -38.32862 -35.87899 -35.49540 -33.65534 -32.89096 -32.26150 -32.08584 -28.95740 -27.70532 -26.71083 -24.66140 -23.31492 -23.18252 -22.13174 -21.03216 -19.58268 -19.25671 -18.50734 -18.22824 -17.46376 -16.91902 -16.85154 -16.45792 -16.13708 -15.65703 -15.54008 -15.20698 -15.03275 -14.81859 -14.53299 -14.28588 -13.87306 -13.73339 -13.51494 -13.38968 -13.15743 -13.09758 -12.72974 -12.69258 -12.52252 -12.26622 -12.00016 -11.62998 -11.54151 -11.39278 -11.18005 -10.98086 -10.58406 -9.96354 -9.40723 -9.30115 -9.07629 -8.87194 -6.46045 -0.02243 0.30077 0.77525 0.89723 1.26956 1.39218 1.49213 1.79791 1.96534 2.13818 2.63614 2.73935 3.07427 3.33789 3.56274 3.83276 3.95969 4.07423 4.24914 4.26694 4.41154 4.46371 4.49922 4.55731 4.70078 4.72875 4.76735 4.91993 4.93914 5.01466 5.06269 5.13306 5.15621 5.34471 5.36809 5.65983 5.72325 5.85740 5.94070 6.04324 6.27076 6.28478 6.45269 6.67361 6.79257 6.89795 7.07312 7.42655 8.20955 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.015544 B = 0.004079 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1800.874195 B = 6862.319431 C = 7241.870099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.122 3.878 3 C -0.181 4.181 4 C -0.068 4.068 5 C 0.012 3.988 6 O -0.488 6.488 7 C 0.318 3.682 8 N -0.655 5.655 9 C 0.503 3.497 10 O -0.506 6.506 11 C -0.069 4.069 12 C -0.174 4.174 13 C -0.078 4.078 14 C -0.229 4.229 15 C -0.090 4.090 16 C -0.256 4.256 17 C 0.085 3.915 18 C -0.469 4.469 19 H 0.053 0.947 20 C 0.048 3.952 21 N -0.854 5.854 22 Si 0.965 3.035 23 H -0.268 1.268 24 H -0.277 1.277 25 H -0.249 1.249 26 N -0.513 5.513 27 H 0.079 0.921 28 H 0.052 0.948 29 H 0.112 0.888 30 H 0.176 0.824 31 H 0.180 0.820 32 H 0.407 0.593 33 H 0.431 0.569 34 H 0.124 0.876 35 H 0.100 0.900 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.122 0.878 39 H 0.091 0.909 40 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.836 12.471 8.335 15.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.016 4.016 3 C -0.202 4.202 4 C -0.093 4.093 5 C -0.038 4.038 6 O -0.299 6.299 7 C 0.086 3.914 8 N -0.304 5.304 9 C 0.290 3.710 10 O -0.377 6.377 11 C -0.109 4.109 12 C -0.176 4.176 13 C -0.096 4.096 14 C -0.248 4.248 15 C -0.108 4.108 16 C -0.275 4.275 17 C 0.083 3.917 18 C -0.499 4.499 19 H 0.072 0.928 20 C -0.166 4.166 21 N -0.480 5.480 22 Si 0.789 3.211 23 H -0.194 1.194 24 H -0.203 1.203 25 H -0.173 1.173 26 N -0.230 5.230 27 H 0.098 0.902 28 H 0.071 0.929 29 H 0.130 0.870 30 H 0.194 0.806 31 H 0.197 0.803 32 H 0.265 0.735 33 H 0.270 0.730 34 H 0.142 0.858 35 H 0.118 0.882 36 H 0.143 0.857 37 H 0.146 0.854 38 H 0.140 0.860 39 H 0.109 0.891 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.500 11.663 8.638 14.930 hybrid contribution 0.779 -0.085 -1.215 1.446 sum 4.279 11.579 7.423 14.404 Atomic orbital electron populations 1.20768 0.87615 1.03881 1.03454 1.21750 0.98275 0.87761 0.93853 1.22160 0.94359 0.99475 1.04190 1.22062 0.94660 0.97764 0.94855 1.18816 0.84517 0.91110 1.09395 1.84833 1.13808 1.95927 1.35323 1.19340 0.89237 0.86456 0.96388 1.43694 1.11361 1.02851 1.72480 1.21587 0.88100 0.86207 0.75092 1.90762 1.15542 1.87028 1.44329 1.20355 0.97413 0.87794 1.05339 1.19497 1.02846 1.01893 0.93344 1.20893 0.96622 0.95608 0.96432 1.20867 1.03684 1.02837 0.97436 1.20982 0.98526 0.98638 0.92644 1.21140 1.04025 1.04965 0.97347 1.17711 0.89927 0.90900 0.93172 1.19295 1.40869 0.98437 0.91249 0.92834 1.26793 0.90454 1.05270 0.94055 1.69743 1.38081 1.40598 0.99613 0.85501 0.78933 0.77720 0.78986 1.19447 1.20345 1.17281 1.67481 1.07763 1.31342 1.16447 0.90229 0.92860 0.86967 0.80646 0.80281 0.73511 0.72956 0.85810 0.88190 0.85708 0.85389 0.86007 0.89141 0.89868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.47 10.16 71.24 0.72 -1.74 16 2 C 0.12 3.61 6.78 42.50 0.29 3.90 16 3 C -0.18 -3.73 9.73 22.36 0.22 -3.51 16 4 C -0.07 -1.32 10.12 22.54 0.23 -1.09 16 5 C 0.01 0.30 6.76 22.70 0.15 0.45 16 6 O -0.49 -9.17 12.77 -93.34 -1.19 -10.36 16 7 C 0.32 10.86 7.45 132.98 0.99 11.85 16 8 N -0.65 -21.95 5.39 -308.02 -1.66 -23.61 16 9 C 0.50 21.13 7.41 87.66 0.65 21.78 16 10 O -0.51 -26.49 14.29 -3.03 -0.04 -26.54 16 11 C -0.07 -2.67 5.19 29.10 0.15 -2.52 16 12 C -0.17 -8.07 4.43 -19.41 -0.09 -8.16 16 13 C -0.08 -3.22 9.66 22.22 0.21 -3.00 16 14 C -0.23 -9.31 10.05 22.46 0.23 -9.09 16 15 C -0.09 -3.94 10.02 22.22 0.22 -3.72 16 16 C -0.26 -12.95 7.17 22.73 0.16 -12.79 16 17 C 0.09 4.53 5.10 -21.29 -0.11 4.42 16 18 C -0.47 -26.82 8.55 23.46 0.20 -26.61 16 19 H 0.05 3.31 7.00 -2.91 -0.02 3.29 16 20 C 0.05 2.65 5.41 85.26 0.46 3.11 16 21 N -0.85 -48.16 13.93 21.83 0.30 -47.85 16 22 Si 0.96 44.29 24.52 68.60 1.68 45.97 16 23 H -0.27 -12.04 6.71 99.48 0.67 -11.38 16 24 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 25 H -0.25 -11.52 6.86 99.48 0.68 -10.84 16 26 N -0.51 -19.99 7.79 -180.67 -1.41 -21.40 16 27 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.11 1.77 8.07 -2.38 -0.02 1.75 16 30 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 31 H 0.18 2.05 8.06 -2.91 -0.02 2.02 16 32 H 0.41 4.12 9.06 -74.06 -0.67 3.45 16 33 H 0.43 10.78 8.05 -92.71 -0.75 10.04 16 34 H 0.12 3.59 8.05 -2.39 -0.02 3.57 16 35 H 0.10 3.88 7.13 -2.39 -0.02 3.87 16 36 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 37 H 0.13 4.27 8.06 -2.91 -0.02 4.25 16 38 H 0.12 4.52 8.06 -2.91 -0.02 4.49 16 39 H 0.09 4.63 4.77 -2.91 -0.01 4.61 16 40 H 0.29 14.80 8.30 -92.72 -0.77 14.03 16 Total: -1.00 -80.63 340.34 2.00 -78.63 By element: Atomic # 1 Polarization: 32.25 SS G_CDS: -0.38 Total: 31.88 kcal Atomic # 6 Polarization: -31.42 SS G_CDS: 4.69 Total: -26.72 kcal Atomic # 7 Polarization: -90.09 SS G_CDS: -2.76 Total: -92.86 kcal Atomic # 8 Polarization: -35.66 SS G_CDS: -1.23 Total: -36.89 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.68 Total: 45.97 kcal Total: -80.63 2.00 -78.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753472057.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.229 kcal (2) G-P(sol) polarization free energy of solvation -80.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds