Wall clock time and date at job start Fri Apr 10 2020 22:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38549 * 120.01048 * 2 1 4 4 C 1.40114 * 117.80642 * 179.97438 * 3 2 1 5 5 C 1.48043 * 121.15008 * 179.97438 * 4 3 2 6 6 O 1.21430 * 120.00260 * 174.19405 * 5 4 3 7 7 O 1.34672 * 119.99643 * 354.19806 * 5 4 3 8 8 C 1.45202 * 117.00033 * 180.02562 * 7 5 4 9 9 C 1.50700 * 109.47227 * 180.02562 * 8 7 5 10 10 C 1.38635 * 119.74612 * 269.72523 * 9 8 7 11 11 C 1.37620 * 120.24703 * 179.71804 * 10 9 8 12 12 C 1.40718 * 119.74156 * 0.57749 * 11 10 9 13 13 C 1.41393 * 120.24319 * 179.67598 * 12 11 10 14 14 H 1.07997 * 120.00281 * 207.08740 * 13 12 11 15 15 C 1.39952 * 119.99960 * 27.09119 * 13 12 11 16 16 N 1.30821 * 119.99830 * 13.50476 * 15 13 12 17 17 Si 1.86796 * 119.99792 * 193.50584 * 15 13 12 18 18 H 1.48505 * 109.47199 * 60.00182 * 17 15 13 19 19 H 1.48501 * 109.46693 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47412 * 299.99602 * 17 15 13 21 21 C 1.40718 * 119.51313 * 359.70099 * 12 11 10 22 22 C 1.37614 * 119.74279 * 359.97438 * 21 12 11 23 23 C 1.39809 * 117.70458 * 359.97438 * 4 3 2 24 24 C 1.50697 * 120.17776 * 179.97438 * 23 4 3 25 25 N 1.31899 * 119.64504 * 0.25320 * 23 4 3 26 26 N 1.28274 * 122.33114 * 359.46863 * 25 23 4 27 27 H 1.08998 * 109.46736 * 90.00048 * 1 2 3 28 28 H 1.09000 * 109.46822 * 210.00029 * 1 2 3 29 29 H 1.08997 * 109.46899 * 329.99752 * 1 2 3 30 30 H 1.07997 * 121.09870 * 359.95851 * 3 2 1 31 31 H 1.09006 * 109.46786 * 300.00143 * 8 7 5 32 32 H 1.09003 * 109.46977 * 59.99519 * 8 7 5 33 33 H 1.08000 * 119.87654 * 359.97438 * 10 9 8 34 34 H 1.07994 * 120.13103 * 180.27330 * 11 10 9 35 35 H 0.96999 * 119.99867 * 180.02562 * 16 15 13 36 36 H 1.08001 * 120.12637 * 179.97438 * 21 12 11 37 37 H 1.08010 * 119.87359 * 180.02562 * 22 21 12 38 38 H 1.09001 * 109.47076 * 83.11397 * 24 23 4 39 39 H 1.09000 * 109.46847 * 203.11100 * 24 23 4 40 40 H 1.08997 * 109.47143 * 323.11362 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1997 0.0000 4 6 3.6001 1.1459 0.0006 5 6 4.4141 2.3824 0.0000 6 8 5.6218 2.3145 0.1069 7 8 3.8151 3.5827 -0.1189 8 6 4.6754 4.7524 -0.1123 9 6 3.8348 5.9952 -0.2535 10 6 3.5571 6.4980 -1.5152 11 6 2.7857 7.6289 -1.6564 12 6 2.2885 8.2820 -0.5134 13 6 1.5006 9.4486 -0.6458 14 1 1.4815 10.1804 0.1482 15 6 0.7455 9.6549 -1.8059 16 7 0.5534 8.6700 -2.6452 17 14 0.0118 11.3368 -2.1558 18 1 1.1010 12.3415 -2.2534 19 1 -0.7370 11.2931 -3.4375 20 1 -0.9115 11.7128 -1.0552 21 6 2.5817 7.7658 0.7625 22 6 3.3495 6.6298 0.8795 23 6 4.2020 -0.1160 0.0016 24 6 5.7040 -0.2389 0.0017 25 7 3.4482 -1.1984 -0.0030 26 7 2.1667 -1.1420 0.0015 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.6782 2.1453 -0.0007 31 1 5.2272 4.7922 0.8270 32 1 5.3775 4.6917 -0.9438 33 1 3.9440 5.9980 -2.3908 34 1 2.5668 8.0165 -2.6403 35 1 0.0303 8.8131 -3.4494 36 1 2.2056 8.2594 1.6465 37 1 3.5755 6.2316 1.8577 38 1 6.0762 -0.1449 1.0218 39 1 5.9890 -1.2109 -0.4009 40 1 6.1331 0.5501 -0.6158 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753506279.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:52 Heat of formation + Delta-G solvation = -18.503522 kcal Electronic energy + Delta-G solvation = -24178.039258 eV Core-core repulsion = 20536.825689 eV Total energy + Delta-G solvation = -3641.213568 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.55629 -40.02032 -37.81393 -36.42799 -34.63181 -33.99833 -33.76694 -30.97487 -30.10446 -29.46928 -27.42091 -27.03217 -25.49857 -23.95150 -22.96865 -21.21047 -21.13707 -20.16844 -18.12558 -17.59330 -17.46524 -16.54682 -16.35072 -15.87698 -15.53291 -15.35792 -14.70391 -14.16020 -13.94699 -13.88373 -13.58312 -13.45833 -12.98239 -12.88770 -12.64249 -12.50929 -12.46479 -12.30509 -12.12102 -11.80487 -11.25339 -11.23574 -11.08995 -10.94421 -10.66882 -10.54844 -10.47800 -10.32012 -9.89964 -9.75222 -9.68503 -9.54132 -9.33956 -7.66053 -7.52654 -6.90811 -4.56038 0.03055 0.60277 2.22457 2.36776 2.82345 2.91748 2.97679 3.00061 3.16729 3.29515 3.67013 3.80433 4.01556 4.15445 4.39384 4.51854 4.76187 4.89237 5.05377 5.29909 5.35573 5.45959 5.49574 5.51766 5.52876 5.53739 5.56095 5.81312 5.88787 5.95915 6.07462 6.14205 6.21504 6.58597 6.78226 6.90526 7.08138 7.17438 7.42823 7.62166 7.74414 7.87453 7.90256 8.10855 8.41571 8.45783 8.70722 8.77481 10.02412 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.018898 B = 0.002824 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.255927 B = 9913.487150 C =10880.449654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.054 3.946 3 C -0.052 4.052 4 C -0.120 4.120 5 C 0.506 3.494 6 O -0.497 6.497 7 O -0.342 6.342 8 C 0.137 3.863 9 C -0.238 4.238 10 C -0.076 4.076 11 C -0.166 4.166 12 C 0.119 3.881 13 C -0.456 4.456 14 H 0.080 0.920 15 C 0.074 3.926 16 N -0.789 5.789 17 Si 0.913 3.087 18 H -0.263 1.263 19 H -0.277 1.277 20 H -0.264 1.264 21 C -0.228 4.228 22 C -0.064 4.064 23 C 0.118 3.882 24 C -0.106 4.106 25 N -0.245 5.245 26 N -0.221 5.221 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.170 0.830 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.122 0.878 35 H 0.283 0.717 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.678 -11.381 2.440 11.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.091 4.091 3 C -0.081 4.081 4 C -0.132 4.132 5 C 0.349 3.651 6 O -0.387 6.387 7 O -0.258 6.258 8 C 0.066 3.934 9 C -0.239 4.239 10 C -0.095 4.095 11 C -0.185 4.185 12 C 0.117 3.883 13 C -0.484 4.484 14 H 0.098 0.902 15 C -0.145 4.145 16 N -0.414 5.414 17 Si 0.737 3.263 18 H -0.187 1.187 19 H -0.202 1.202 20 H -0.189 1.189 21 C -0.247 4.247 22 C -0.082 4.082 23 C -0.026 4.026 24 C -0.164 4.164 25 N -0.087 5.087 26 N -0.065 5.065 27 H 0.105 0.895 28 H 0.102 0.898 29 H 0.103 0.897 30 H 0.187 0.813 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.139 0.861 35 H 0.094 0.906 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.851 -13.046 2.239 13.366 hybrid contribution -0.330 2.338 -0.208 2.371 sum 1.522 -10.707 2.032 11.004 Atomic orbital electron populations 1.20718 0.86642 1.04441 1.04073 1.22951 0.99565 0.89717 0.96855 1.22858 0.93218 1.01215 0.90775 1.20386 0.94351 0.93118 1.05321 1.20730 0.86174 0.84381 0.73786 1.90774 1.14875 1.87666 1.45362 1.86769 1.43029 1.14273 1.81686 1.21857 0.90778 0.79570 1.01223 1.18653 1.13009 0.98020 0.94219 1.20556 0.97781 0.96613 0.94524 1.21332 1.00054 0.97622 0.99525 1.17704 0.88434 0.91334 0.90850 1.19665 1.22483 1.04527 1.01772 0.90197 1.25966 0.95171 0.98335 0.95035 1.69786 1.29892 1.31754 1.09971 0.86284 0.79567 0.81965 0.78485 1.18718 1.20196 1.18876 1.21002 1.07389 0.99392 0.96949 1.20398 0.96549 0.95652 0.95634 1.23137 0.99765 0.88298 0.91379 1.20983 0.86341 1.04385 1.04672 1.73096 0.98957 1.25827 1.10826 1.72753 1.01796 1.25148 1.06768 0.89487 0.89758 0.89681 0.81291 0.91685 0.91614 0.89277 0.86073 0.90559 0.88638 0.89257 0.89289 0.90333 0.87950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 10.19 36.01 0.37 -0.43 16 2 C 0.05 0.62 6.86 -82.45 -0.57 0.05 16 3 C -0.05 -0.62 9.46 -38.76 -0.37 -0.99 16 4 C -0.12 -1.63 5.92 -104.58 -0.62 -2.25 16 5 C 0.51 7.75 7.86 34.75 0.27 8.02 16 6 O -0.50 -7.97 13.33 -19.21 -0.26 -8.23 16 7 O -0.34 -5.78 9.62 -40.42 -0.39 -6.17 16 8 C 0.14 2.40 5.59 36.01 0.20 2.60 16 9 C -0.24 -4.91 5.54 -104.33 -0.58 -5.49 16 10 C -0.08 -1.68 9.67 -39.66 -0.38 -2.06 16 11 C -0.17 -4.07 8.67 -38.87 -0.34 -4.41 16 12 C 0.12 3.01 5.56 -106.82 -0.59 2.41 16 13 C -0.46 -11.40 9.06 -37.74 -0.34 -11.74 16 14 H 0.08 1.91 7.88 -52.49 -0.41 1.50 16 15 C 0.07 1.74 5.21 -17.34 -0.09 1.65 16 16 N -0.79 -19.29 10.88 55.55 0.60 -18.69 16 17 Si 0.91 17.64 29.58 -169.99 -5.03 12.61 16 18 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 19 H -0.28 -5.23 7.11 56.52 0.40 -4.82 16 20 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 21 C -0.23 -5.26 9.80 -38.87 -0.38 -5.64 16 22 C -0.06 -1.35 9.67 -39.66 -0.38 -1.73 16 23 C 0.12 1.57 6.91 -81.98 -0.57 1.01 16 24 C -0.11 -1.18 8.95 36.00 0.32 -0.86 16 25 N -0.24 -3.47 11.42 33.82 0.39 -3.08 16 26 N -0.22 -3.02 11.40 33.58 0.38 -2.64 16 27 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.56 8.09 -51.93 -0.42 0.14 16 30 H 0.17 1.86 7.78 -52.49 -0.41 1.45 16 31 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 32 H 0.07 1.09 8.07 -51.93 -0.42 0.67 16 33 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 34 H 0.12 3.07 6.19 -52.49 -0.33 2.74 16 35 H 0.28 6.31 8.30 -40.82 -0.34 5.97 16 36 H 0.10 2.07 8.06 -52.49 -0.42 1.64 16 37 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 38 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.10 1.22 5.97 -51.93 -0.31 0.91 16 LS Contribution 349.58 15.07 5.27 5.27 Total: -1.00 -27.56 349.58 -7.88 -35.44 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -4.81 Total: 5.35 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -4.04 Total: -19.86 kcal Atomic # 7 Polarization: -25.78 SS G_CDS: 1.37 Total: -24.41 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -0.65 Total: -14.40 kcal Atomic # 14 Polarization: 17.64 SS G_CDS: -5.03 Total: 12.61 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -27.56 -7.88 -35.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753506279.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.939 kcal (2) G-P(sol) polarization free energy of solvation -27.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds