Wall clock time and date at job start Fri Apr 10 2020 22:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38549 * 120.01048 * 2 1 4 4 C 1.40114 * 117.80642 * 179.97438 * 3 2 1 5 5 C 1.48043 * 121.15008 * 179.97438 * 4 3 2 6 6 O 1.21430 * 120.00260 * 174.19405 * 5 4 3 7 7 O 1.34672 * 119.99643 * 354.19806 * 5 4 3 8 8 C 1.45202 * 117.00033 * 180.02562 * 7 5 4 9 9 C 1.50700 * 109.47227 * 180.02562 * 8 7 5 10 10 C 1.38635 * 119.74612 * 269.72523 * 9 8 7 11 11 C 1.37620 * 120.24703 * 179.71804 * 10 9 8 12 12 C 1.40718 * 119.74156 * 0.57749 * 11 10 9 13 13 C 1.41393 * 120.24319 * 179.67598 * 12 11 10 14 14 H 1.07997 * 120.00281 * 207.08740 * 13 12 11 15 15 C 1.39952 * 119.99960 * 27.09119 * 13 12 11 16 16 N 1.30821 * 119.99830 * 13.50476 * 15 13 12 17 17 Si 1.86796 * 119.99792 * 193.50584 * 15 13 12 18 18 H 1.48505 * 109.47199 * 60.00182 * 17 15 13 19 19 H 1.48501 * 109.46693 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47412 * 299.99602 * 17 15 13 21 21 C 1.40718 * 119.51313 * 359.70099 * 12 11 10 22 22 C 1.37614 * 119.74279 * 359.97438 * 21 12 11 23 23 C 1.39809 * 117.70458 * 359.97438 * 4 3 2 24 24 C 1.50697 * 120.17776 * 179.97438 * 23 4 3 25 25 N 1.31899 * 119.64504 * 0.25320 * 23 4 3 26 26 N 1.28274 * 122.33114 * 359.46863 * 25 23 4 27 27 H 1.08998 * 109.46736 * 90.00048 * 1 2 3 28 28 H 1.09000 * 109.46822 * 210.00029 * 1 2 3 29 29 H 1.08997 * 109.46899 * 329.99752 * 1 2 3 30 30 H 1.07997 * 121.09870 * 359.95851 * 3 2 1 31 31 H 1.09006 * 109.46786 * 300.00143 * 8 7 5 32 32 H 1.09003 * 109.46977 * 59.99519 * 8 7 5 33 33 H 1.08000 * 119.87654 * 359.97438 * 10 9 8 34 34 H 1.07994 * 120.13103 * 180.27330 * 11 10 9 35 35 H 0.96999 * 119.99867 * 180.02562 * 16 15 13 36 36 H 1.08001 * 120.12637 * 179.97438 * 21 12 11 37 37 H 1.08010 * 119.87359 * 180.02562 * 22 21 12 38 38 H 1.09001 * 109.47076 * 83.11397 * 24 23 4 39 39 H 1.09000 * 109.46847 * 203.11100 * 24 23 4 40 40 H 1.08997 * 109.47143 * 323.11362 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2000 1.1997 0.0000 4 6 3.6001 1.1459 0.0006 5 6 4.4141 2.3824 0.0000 6 8 5.6218 2.3145 0.1069 7 8 3.8151 3.5827 -0.1189 8 6 4.6754 4.7524 -0.1123 9 6 3.8348 5.9952 -0.2535 10 6 3.5571 6.4980 -1.5152 11 6 2.7857 7.6289 -1.6564 12 6 2.2885 8.2820 -0.5134 13 6 1.5006 9.4486 -0.6458 14 1 1.4815 10.1804 0.1482 15 6 0.7455 9.6549 -1.8059 16 7 0.5534 8.6700 -2.6452 17 14 0.0118 11.3368 -2.1558 18 1 1.1010 12.3415 -2.2534 19 1 -0.7370 11.2931 -3.4375 20 1 -0.9115 11.7128 -1.0552 21 6 2.5817 7.7658 0.7625 22 6 3.3495 6.6298 0.8795 23 6 4.2020 -0.1160 0.0016 24 6 5.7040 -0.2389 0.0017 25 7 3.4482 -1.1984 -0.0030 26 7 2.1667 -1.1420 0.0015 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.6782 2.1453 -0.0007 31 1 5.2272 4.7922 0.8270 32 1 5.3775 4.6917 -0.9438 33 1 3.9440 5.9980 -2.3908 34 1 2.5668 8.0165 -2.6403 35 1 0.0303 8.8131 -3.4494 36 1 2.2056 8.2594 1.6465 37 1 3.5755 6.2316 1.8577 38 1 6.0762 -0.1449 1.0218 39 1 5.9890 -1.2109 -0.4009 40 1 6.1331 0.5501 -0.6158 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753506279.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:51 Heat of formation + Delta-G solvation = -31.125141 kcal Electronic energy + Delta-G solvation = -24178.586572 eV Core-core repulsion = 20536.825689 eV Total energy + Delta-G solvation = -3641.760883 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.58671 -41.25070 -39.49916 -37.75913 -35.71763 -35.52556 -34.84500 -32.60840 -31.24671 -31.00475 -29.00506 -27.93158 -26.64772 -25.43899 -24.02946 -22.95365 -22.33384 -21.83464 -19.27035 -19.20926 -18.73445 -17.78810 -17.57775 -17.16543 -16.83847 -16.47435 -16.13265 -15.67989 -15.45819 -15.13171 -14.51285 -14.41596 -14.39203 -14.01275 -13.93408 -13.84376 -13.66416 -13.48519 -13.34762 -13.11162 -12.84460 -12.71504 -12.60588 -12.21887 -12.10471 -11.83713 -11.74687 -11.52737 -11.49021 -11.27914 -11.08810 -10.83232 -10.62132 -9.43593 -9.31229 -8.65620 -6.41349 -1.01046 -0.34442 0.66794 1.10995 1.21089 1.37442 1.40926 1.50746 1.68978 2.19798 2.29201 2.70416 2.76237 3.05336 3.19366 3.45142 3.65061 3.77727 3.98447 4.04587 4.10881 4.16472 4.40779 4.47442 4.49123 4.55586 4.63313 4.71657 4.73469 4.78244 5.01349 5.03125 5.06674 5.12287 5.23866 5.30335 5.37678 5.40132 5.65421 5.87201 6.06068 6.13264 6.32582 6.48769 6.64919 6.89161 6.96749 7.43026 8.29942 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.018898 B = 0.002824 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.255927 B = 9913.487150 C =10880.449654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.058 3.942 3 C -0.046 4.046 4 C -0.133 4.133 5 C 0.512 3.488 6 O -0.504 6.504 7 O -0.350 6.350 8 C 0.141 3.859 9 C -0.228 4.228 10 C -0.080 4.080 11 C -0.189 4.189 12 C 0.089 3.911 13 C -0.494 4.494 14 H 0.079 0.921 15 C 0.035 3.965 16 N -0.822 5.822 17 Si 0.983 3.017 18 H -0.261 1.261 19 H -0.268 1.268 20 H -0.259 1.259 21 C -0.242 4.242 22 C -0.064 4.064 23 C 0.114 3.886 24 C -0.102 4.102 25 N -0.263 5.263 26 N -0.241 5.241 27 H 0.099 0.901 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.181 0.819 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.289 0.711 36 H 0.102 0.898 37 H 0.120 0.880 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.470 -12.049 2.903 12.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.087 4.087 3 C -0.075 4.075 4 C -0.145 4.145 5 C 0.356 3.644 6 O -0.394 6.394 7 O -0.266 6.266 8 C 0.070 3.930 9 C -0.229 4.229 10 C -0.099 4.099 11 C -0.209 4.209 12 C 0.086 3.914 13 C -0.523 4.523 14 H 0.097 0.903 15 C -0.181 4.181 16 N -0.447 5.447 17 Si 0.804 3.196 18 H -0.185 1.185 19 H -0.192 1.192 20 H -0.183 1.183 21 C -0.261 4.261 22 C -0.083 4.083 23 C -0.030 4.030 24 C -0.160 4.160 25 N -0.104 5.104 26 N -0.083 5.083 27 H 0.118 0.882 28 H 0.111 0.889 29 H 0.120 0.880 30 H 0.199 0.801 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.100 0.900 36 H 0.120 0.880 37 H 0.138 0.862 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.656 -13.745 2.711 14.108 hybrid contribution -0.204 2.372 -0.301 2.400 sum 1.452 -11.373 2.411 11.716 Atomic orbital electron populations 1.20876 0.84025 1.05685 1.05219 1.23447 1.01137 0.88797 0.95306 1.23075 0.92739 1.02015 0.89704 1.20343 0.94936 0.92417 1.06805 1.20857 0.86195 0.84132 0.73257 1.90776 1.15259 1.87654 1.45727 1.86704 1.42998 1.14672 1.82222 1.21727 0.90108 0.78610 1.02587 1.18965 1.11577 0.98896 0.93438 1.20796 0.97130 0.95895 0.96067 1.21290 1.01736 0.99056 0.98778 1.18043 0.89288 0.92135 0.91909 1.19911 1.24085 1.05257 1.03032 0.90304 1.26766 0.95107 1.01856 0.94347 1.69842 1.30761 1.33577 1.10553 0.85228 0.78726 0.77088 0.78578 1.18517 1.19244 1.18337 1.21207 1.08094 1.00282 0.96530 1.20723 0.95518 0.94751 0.97265 1.23374 1.00590 0.87974 0.91090 1.20993 0.85092 1.04913 1.04999 1.73062 0.99431 1.26286 1.11665 1.72705 1.01809 1.26299 1.07500 0.88214 0.88950 0.88021 0.80124 0.90084 0.90629 0.87511 0.87814 0.89993 0.87957 0.86240 0.88586 0.88900 0.88704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.33 10.19 71.24 0.73 -0.61 16 2 C 0.06 1.23 6.86 42.63 0.29 1.53 16 3 C -0.05 -1.03 9.46 22.80 0.22 -0.81 16 4 C -0.13 -3.42 5.92 -19.84 -0.12 -3.54 16 5 C 0.51 14.69 7.86 70.42 0.55 15.25 16 6 O -0.50 -15.21 13.33 20.06 0.27 -14.94 16 7 O -0.35 -11.05 9.62 -55.81 -0.54 -11.59 16 8 C 0.14 4.59 5.59 71.24 0.40 4.99 16 9 C -0.23 -9.03 5.54 -19.68 -0.11 -9.14 16 10 C -0.08 -3.51 9.67 22.22 0.21 -3.30 16 11 C -0.19 -9.50 8.67 22.73 0.20 -9.30 16 12 C 0.09 4.57 5.56 -21.29 -0.12 4.45 16 13 C -0.49 -25.44 9.06 23.46 0.21 -25.23 16 14 H 0.08 3.89 7.88 -2.91 -0.02 3.87 16 15 C 0.03 1.67 5.21 85.26 0.44 2.11 16 16 N -0.82 -41.15 10.88 21.83 0.24 -40.91 16 17 Si 0.98 36.42 29.58 68.60 2.03 38.45 16 18 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 19 H -0.27 -9.42 7.11 99.48 0.71 -8.71 16 20 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 21 C -0.24 -11.17 9.80 22.73 0.22 -10.95 16 22 C -0.06 -2.61 9.67 22.22 0.21 -2.40 16 23 C 0.11 2.90 6.91 42.93 0.30 3.19 16 24 C -0.10 -2.14 8.95 71.24 0.64 -1.50 16 25 N -0.26 -7.17 11.42 -46.91 -0.54 -7.70 16 26 N -0.24 -6.24 11.40 -47.68 -0.54 -6.79 16 27 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.10 1.04 8.09 -2.39 -0.02 1.02 16 30 H 0.18 3.56 7.78 -2.91 -0.02 3.54 16 31 H 0.08 2.40 8.08 -2.38 -0.02 2.38 16 32 H 0.08 2.32 8.07 -2.39 -0.02 2.30 16 33 H 0.11 4.18 8.06 -2.91 -0.02 4.15 16 34 H 0.10 5.48 6.19 -2.91 -0.02 5.46 16 35 H 0.29 13.12 8.30 -92.71 -0.77 12.35 16 36 H 0.10 4.44 8.06 -2.91 -0.02 4.42 16 37 H 0.12 4.08 8.06 -2.91 -0.02 4.05 16 38 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.09 2.14 5.97 -2.39 -0.01 2.13 16 Total: -1.00 -59.75 349.58 6.27 -53.48 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: 1.07 Total: 25.26 kcal Atomic # 6 Polarization: -39.54 SS G_CDS: 4.28 Total: -35.26 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: -0.84 Total: -55.40 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.27 Total: -26.53 kcal Atomic # 14 Polarization: 36.42 SS G_CDS: 2.03 Total: 38.45 kcal Total: -59.75 6.27 -53.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753506279.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.356 kcal (2) G-P(sol) polarization free energy of solvation -59.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds