Wall clock time and date at job start Fri Apr 10 2020 22:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38078 * 119.51051 * 2 1 4 4 C 1.38739 * 119.34197 * 180.25849 * 3 2 1 5 5 C 1.38959 * 118.42443 * 359.45176 * 4 3 2 6 6 N 1.40130 * 120.50072 * 180.25317 * 5 4 3 7 7 C 1.34769 * 120.00528 * 17.42964 * 6 5 4 8 8 O 1.21296 * 119.99952 * 5.44344 * 7 6 5 9 9 C 1.50695 * 120.00333 * 185.44812 * 7 6 5 10 10 C 1.50700 * 109.47490 * 179.97438 * 9 7 6 11 11 C 1.37638 * 120.12771 * 265.00070 * 10 9 7 12 12 C 1.38612 * 120.24880 * 179.97438 * 11 10 9 13 13 C 1.38661 * 120.50157 * 0.02860 * 12 11 10 14 14 C 1.37599 * 120.24834 * 0.02562 * 13 12 11 15 15 C 1.40698 * 120.12636 * 84.72381 * 10 9 7 16 16 C 1.41393 * 120.24689 * 0.02562 * 15 10 9 17 17 H 1.08000 * 119.99481 * 329.54121 * 16 15 10 18 18 C 1.39940 * 120.00264 * 149.54391 * 16 15 10 19 19 N 1.30824 * 119.99818 * 348.07392 * 18 16 15 20 20 Si 1.86804 * 120.00165 * 168.07253 * 18 16 15 21 21 H 1.48507 * 109.46891 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46987 * 119.99733 * 20 18 16 23 23 H 1.48491 * 109.47326 * 240.00079 * 20 18 16 24 24 C 1.39482 * 118.99103 * 0.27696 * 5 4 3 25 25 O 1.35739 * 119.72881 * 179.97438 * 24 5 4 26 26 N 1.31990 * 119.51212 * 179.70201 * 2 1 3 27 27 H 1.09004 * 109.46924 * 270.30305 * 1 2 3 28 28 H 1.09002 * 109.47440 * 30.29838 * 1 2 3 29 29 H 1.08998 * 109.47082 * 150.30350 * 1 2 3 30 30 H 1.08000 * 120.32906 * 0.02562 * 3 2 1 31 31 H 1.08003 * 120.78291 * 179.72613 * 4 3 2 32 32 H 0.97001 * 119.99736 * 197.42357 * 6 5 4 33 33 H 1.09006 * 109.47400 * 299.99629 * 9 7 6 34 34 H 1.09000 * 109.47386 * 59.99624 * 9 7 6 35 35 H 1.08000 * 119.87844 * 359.97438 * 11 10 9 36 36 H 1.08001 * 119.75166 * 179.97438 * 12 11 10 37 37 H 1.08003 * 119.87559 * 179.97438 * 13 12 11 38 38 H 1.07999 * 120.12682 * 179.97438 * 14 13 12 39 39 H 0.97004 * 119.99874 * 180.02562 * 19 18 16 40 40 H 0.96692 * 114.00243 * 90.00035 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1872 1.2016 0.0000 4 6 3.5746 1.1976 -0.0055 5 6 4.2324 -0.0264 0.0009 6 7 5.6327 -0.0813 0.0011 7 6 6.3497 1.0068 0.3450 8 8 5.7859 2.0020 0.7488 9 6 7.8519 0.9873 0.2276 10 6 8.4078 2.3162 0.6703 11 6 8.6772 3.2961 -0.2579 12 6 9.1881 4.5196 0.1466 13 6 9.4340 4.7708 1.4879 14 6 9.1733 3.8054 2.4331 15 6 8.6479 2.5620 2.0347 16 6 8.3700 1.5648 2.9978 17 1 7.5715 0.8577 2.8279 18 6 9.1296 1.4940 4.1710 19 7 10.2341 2.1869 4.2779 20 14 8.5663 0.4103 5.5844 21 1 7.2961 -0.2646 5.2149 22 1 9.6050 -0.6122 5.8685 23 1 8.3502 1.2455 6.7930 24 6 3.4778 -1.1995 0.0066 25 8 4.1050 -2.4033 0.0124 26 7 2.1572 -1.1486 0.0060 27 1 -0.3633 0.0054 1.0277 28 1 -0.3634 0.8873 -0.5185 29 1 -0.3633 -0.8927 -0.5091 30 1 1.6446 2.1354 0.0004 31 1 4.1300 2.1238 -0.0100 32 1 6.0859 -0.9025 -0.2461 33 1 8.2555 0.1957 0.8592 34 1 8.1331 0.8035 -0.8094 35 1 8.4899 3.1112 -1.3053 36 1 9.3969 5.2826 -0.5886 37 1 9.8325 5.7275 1.7918 38 1 9.3660 4.0031 3.4772 39 1 10.7608 2.1375 5.0910 40 1 4.2868 -2.7478 0.8974 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000754516886.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:54 Heat of formation + Delta-G solvation = -21.997596 kcal Electronic energy + Delta-G solvation = -25033.796509 eV Core-core repulsion = 21392.431427 eV Total energy + Delta-G solvation = -3641.365083 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.96327 -39.28656 -37.47598 -37.25740 -34.81624 -33.64545 -32.31015 -31.55444 -31.21250 -29.52218 -27.67457 -26.23078 -24.99287 -23.49044 -22.52144 -20.99921 -20.63142 -19.52745 -18.67346 -17.90322 -17.17685 -16.83202 -16.17423 -15.47818 -15.38852 -15.06932 -14.56056 -14.41016 -13.99153 -13.78128 -13.49814 -13.47317 -13.08575 -12.69238 -12.63526 -12.35209 -12.15670 -11.84822 -11.74213 -11.62158 -11.34461 -11.17345 -11.07023 -10.74346 -10.69596 -10.43870 -9.93424 -9.55470 -9.51435 -9.43386 -9.25361 -9.01819 -7.94468 -7.39485 -7.31862 -6.75748 -4.42546 0.94864 1.27128 2.69691 2.85736 2.97320 3.04326 3.08332 3.19891 3.28677 3.43895 3.82223 3.90165 4.58945 4.62316 4.77720 4.95738 5.08930 5.38160 5.43284 5.48656 5.56508 5.66762 5.80586 5.87028 5.92682 6.04893 6.20448 6.23322 6.30192 6.36346 6.43962 6.71579 6.73168 7.04653 7.21347 7.34396 7.39979 7.51249 7.61581 7.84184 7.90780 7.99806 8.05374 8.24863 8.45775 8.58982 8.85944 8.94107 10.19246 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.013481 B = 0.004162 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.430923 B = 6726.439870 C = 7820.542823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.110 3.890 3 C -0.153 4.153 4 C -0.091 4.091 5 C 0.103 3.897 6 N -0.671 5.671 7 C 0.515 3.485 8 O -0.497 6.497 9 C -0.068 4.068 10 C -0.182 4.182 11 C -0.082 4.082 12 C -0.234 4.234 13 C -0.107 4.107 14 C -0.152 4.152 15 C 0.131 3.869 16 C -0.461 4.461 17 H 0.072 0.928 18 C 0.076 3.924 19 N -0.800 5.800 20 Si 0.904 3.096 21 H -0.263 1.263 22 H -0.274 1.274 23 H -0.272 1.272 24 C 0.270 3.730 25 O -0.480 6.480 26 N -0.482 5.482 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.139 0.861 31 H 0.175 0.825 32 H 0.414 0.586 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.116 0.884 39 H 0.279 0.721 40 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.619 -5.594 -5.801 13.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.028 4.028 3 C -0.174 4.174 4 C -0.118 4.118 5 C 0.003 3.997 6 N -0.316 5.316 7 C 0.304 3.696 8 O -0.369 6.369 9 C -0.108 4.108 10 C -0.184 4.184 11 C -0.100 4.100 12 C -0.253 4.253 13 C -0.126 4.126 14 C -0.171 4.171 15 C 0.129 3.871 16 C -0.491 4.491 17 H 0.091 0.909 18 C -0.140 4.140 19 N -0.426 5.426 20 Si 0.729 3.271 21 H -0.187 1.187 22 H -0.200 1.200 23 H -0.197 1.197 24 C 0.087 3.913 25 O -0.287 6.287 26 N -0.201 5.201 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.157 0.843 31 H 0.191 0.809 32 H 0.251 0.749 33 H 0.120 0.880 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.134 0.866 39 H 0.090 0.910 40 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -11.155 -5.559 -5.946 13.809 hybrid contribution 0.655 -0.303 1.140 1.349 sum -10.500 -5.862 -4.806 12.950 Atomic orbital electron populations 1.20651 0.88698 1.03237 1.02923 1.20881 0.96639 0.87279 0.98050 1.21947 0.94337 0.99185 1.01886 1.22290 0.94290 0.98952 0.96313 1.18990 0.84782 0.94183 1.01771 1.43817 1.03301 1.16703 1.67779 1.21676 0.91071 0.81631 0.75189 1.90565 1.71754 1.32712 1.41914 1.20289 0.88268 1.00265 1.01981 1.19047 1.11687 0.93919 0.93783 1.20319 0.99387 0.93793 0.96532 1.20340 1.12081 0.97609 0.95303 1.20712 1.00493 0.97815 0.93581 1.21295 1.04255 0.92896 0.98677 1.17339 0.87917 0.91663 0.90223 1.19460 1.14937 1.13348 1.01339 0.90941 1.25844 0.93715 0.95430 0.99042 1.69799 1.10598 1.34960 1.27214 0.86331 0.79704 0.80118 0.80974 1.18709 1.19951 1.19726 1.18653 0.86788 0.84084 1.01765 1.84777 1.76644 1.33331 1.33915 1.66876 1.08521 1.30680 1.14035 0.90629 0.90707 0.90735 0.84303 0.80851 0.74929 0.87987 0.89901 0.89633 0.89520 0.89452 0.86611 0.91006 0.74665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.88 10.16 36.01 0.37 -0.51 16 2 C 0.11 1.41 6.78 -82.58 -0.56 0.85 16 3 C -0.15 -1.98 9.73 -39.46 -0.38 -2.36 16 4 C -0.09 -1.41 8.92 -39.13 -0.35 -1.76 16 5 C 0.10 1.57 6.57 -83.33 -0.55 1.03 16 6 N -0.67 -9.85 5.35 -9.65 -0.05 -9.91 16 7 C 0.51 9.35 7.29 -10.99 -0.08 9.27 16 8 O -0.50 -10.76 12.89 5.54 0.07 -10.69 16 9 C -0.07 -1.25 5.19 -29.04 -0.15 -1.40 16 10 C -0.18 -4.16 4.43 -103.91 -0.46 -4.62 16 11 C -0.08 -1.80 9.66 -39.66 -0.38 -2.18 16 12 C -0.23 -5.23 10.05 -39.29 -0.39 -5.62 16 13 C -0.11 -2.53 10.02 -39.66 -0.40 -2.93 16 14 C -0.15 -3.93 8.65 -38.87 -0.34 -4.27 16 15 C 0.13 3.36 5.53 -106.82 -0.59 2.77 16 16 C -0.46 -11.72 8.03 -37.74 -0.30 -12.02 16 17 H 0.07 1.80 6.81 -52.49 -0.36 1.44 16 18 C 0.08 1.88 5.22 -17.34 -0.09 1.78 16 19 N -0.80 -20.25 11.00 55.55 0.61 -19.64 16 20 Si 0.90 18.51 29.58 -169.99 -5.03 13.48 16 21 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 22 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 23 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 24 C 0.27 3.90 7.77 -16.95 -0.13 3.76 16 25 O -0.48 -5.80 12.91 -18.93 -0.24 -6.05 16 26 N -0.48 -7.06 10.29 -9.40 -0.10 -7.16 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 31 H 0.17 3.00 5.39 -52.48 -0.28 2.71 16 32 H 0.41 4.86 8.23 -40.82 -0.34 4.53 16 33 H 0.10 1.82 7.15 -51.93 -0.37 1.44 16 34 H 0.08 1.25 8.05 -51.93 -0.42 0.83 16 35 H 0.09 1.64 8.06 -52.49 -0.42 1.21 16 36 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 38 H 0.12 3.10 6.38 -52.49 -0.33 2.77 16 39 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 40 H 0.40 3.17 9.06 45.56 0.41 3.58 16 LS Contribution 343.31 15.07 5.17 5.17 Total: -1.00 -31.22 343.31 -8.14 -39.36 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -3.78 Total: 13.62 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -4.79 Total: -18.21 kcal Atomic # 7 Polarization: -37.16 SS G_CDS: 0.46 Total: -36.70 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.17 Total: -16.74 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.22 -8.14 -39.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754516886.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.361 kcal (2) G-P(sol) polarization free energy of solvation -31.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds