Wall clock time and date at job start Fri Apr 10 2020 22:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38078 * 119.51051 * 2 1 4 4 C 1.38739 * 119.34197 * 180.25849 * 3 2 1 5 5 C 1.38959 * 118.42443 * 359.45176 * 4 3 2 6 6 N 1.40130 * 120.50072 * 180.25317 * 5 4 3 7 7 C 1.34769 * 120.00528 * 17.42964 * 6 5 4 8 8 O 1.21296 * 119.99952 * 5.44344 * 7 6 5 9 9 C 1.50695 * 120.00333 * 185.44812 * 7 6 5 10 10 C 1.50700 * 109.47490 * 179.97438 * 9 7 6 11 11 C 1.37638 * 120.12771 * 265.00070 * 10 9 7 12 12 C 1.38612 * 120.24880 * 179.97438 * 11 10 9 13 13 C 1.38661 * 120.50157 * 0.02860 * 12 11 10 14 14 C 1.37599 * 120.24834 * 0.02562 * 13 12 11 15 15 C 1.40698 * 120.12636 * 84.72381 * 10 9 7 16 16 C 1.41393 * 120.24689 * 0.02562 * 15 10 9 17 17 H 1.08000 * 119.99481 * 329.54121 * 16 15 10 18 18 C 1.39940 * 120.00264 * 149.54391 * 16 15 10 19 19 N 1.30824 * 119.99818 * 348.07392 * 18 16 15 20 20 Si 1.86804 * 120.00165 * 168.07253 * 18 16 15 21 21 H 1.48507 * 109.46891 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46987 * 119.99733 * 20 18 16 23 23 H 1.48491 * 109.47326 * 240.00079 * 20 18 16 24 24 C 1.39482 * 118.99103 * 0.27696 * 5 4 3 25 25 O 1.35739 * 119.72881 * 179.97438 * 24 5 4 26 26 N 1.31990 * 119.51212 * 179.70201 * 2 1 3 27 27 H 1.09004 * 109.46924 * 270.30305 * 1 2 3 28 28 H 1.09002 * 109.47440 * 30.29838 * 1 2 3 29 29 H 1.08998 * 109.47082 * 150.30350 * 1 2 3 30 30 H 1.08000 * 120.32906 * 0.02562 * 3 2 1 31 31 H 1.08003 * 120.78291 * 179.72613 * 4 3 2 32 32 H 0.97001 * 119.99736 * 197.42357 * 6 5 4 33 33 H 1.09006 * 109.47400 * 299.99629 * 9 7 6 34 34 H 1.09000 * 109.47386 * 59.99624 * 9 7 6 35 35 H 1.08000 * 119.87844 * 359.97438 * 11 10 9 36 36 H 1.08001 * 119.75166 * 179.97438 * 12 11 10 37 37 H 1.08003 * 119.87559 * 179.97438 * 13 12 11 38 38 H 1.07999 * 120.12682 * 179.97438 * 14 13 12 39 39 H 0.97004 * 119.99874 * 180.02562 * 19 18 16 40 40 H 0.96692 * 114.00243 * 90.00035 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1872 1.2016 0.0000 4 6 3.5746 1.1976 -0.0055 5 6 4.2324 -0.0264 0.0009 6 7 5.6327 -0.0813 0.0011 7 6 6.3497 1.0068 0.3450 8 8 5.7859 2.0020 0.7488 9 6 7.8519 0.9873 0.2276 10 6 8.4078 2.3162 0.6703 11 6 8.6772 3.2961 -0.2579 12 6 9.1881 4.5196 0.1466 13 6 9.4340 4.7708 1.4879 14 6 9.1733 3.8054 2.4331 15 6 8.6479 2.5620 2.0347 16 6 8.3700 1.5648 2.9978 17 1 7.5715 0.8577 2.8279 18 6 9.1296 1.4940 4.1710 19 7 10.2341 2.1869 4.2779 20 14 8.5663 0.4103 5.5844 21 1 7.2961 -0.2646 5.2149 22 1 9.6050 -0.6122 5.8685 23 1 8.3502 1.2455 6.7930 24 6 3.4778 -1.1995 0.0066 25 8 4.1050 -2.4033 0.0124 26 7 2.1572 -1.1486 0.0060 27 1 -0.3633 0.0054 1.0277 28 1 -0.3634 0.8873 -0.5185 29 1 -0.3633 -0.8927 -0.5091 30 1 1.6446 2.1354 0.0004 31 1 4.1300 2.1238 -0.0100 32 1 6.0859 -0.9025 -0.2461 33 1 8.2555 0.1957 0.8592 34 1 8.1331 0.8035 -0.8094 35 1 8.4899 3.1112 -1.3053 36 1 9.3969 5.2826 -0.5886 37 1 9.8325 5.7275 1.7918 38 1 9.3660 4.0031 3.4772 39 1 10.7608 2.1375 5.0910 40 1 4.2868 -2.7478 0.8974 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754516886.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:54 Heat of formation + Delta-G solvation = -44.113108 kcal Electronic energy + Delta-G solvation = -25034.755510 eV Core-core repulsion = 21392.431427 eV Total energy + Delta-G solvation = -3642.324083 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.11679 -40.62603 -39.18271 -38.23333 -36.09215 -35.47462 -33.76918 -32.67724 -32.34357 -31.34968 -29.04990 -27.57313 -26.70594 -24.56653 -23.65694 -22.82288 -22.07700 -21.06616 -19.68328 -19.21002 -18.91066 -18.09281 -17.30403 -17.21344 -16.54114 -16.42167 -16.21590 -15.63020 -15.41397 -15.08406 -15.00508 -14.81140 -14.38146 -14.17815 -13.60900 -13.55744 -13.38658 -13.31466 -13.04018 -12.92993 -12.78251 -12.70920 -12.65953 -12.48598 -12.12645 -11.91869 -11.33567 -11.23171 -11.19956 -11.06819 -10.59877 -10.26476 -9.21020 -9.16063 -9.05842 -8.57431 -6.32584 -0.10959 0.15884 0.96470 1.11044 1.35709 1.47882 1.49921 1.63190 1.99813 2.19292 2.44140 2.76805 2.79840 3.60297 3.63546 3.81324 3.97428 4.02652 4.19985 4.37881 4.46597 4.48571 4.58888 4.69832 4.73732 4.79989 4.84174 4.92764 5.03152 5.07763 5.19959 5.20495 5.32723 5.35234 5.52972 5.66424 5.77078 6.02135 6.14951 6.20089 6.37855 6.41326 6.51376 6.73063 6.87785 6.98942 7.09719 7.13974 8.39753 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.013481 B = 0.004162 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.430923 B = 6726.439870 C = 7820.542823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.111 3.889 3 C -0.153 4.153 4 C -0.107 4.107 5 C 0.080 3.920 6 N -0.654 5.654 7 C 0.519 3.481 8 O -0.539 6.539 9 C -0.067 4.067 10 C -0.185 4.185 11 C -0.091 4.091 12 C -0.236 4.236 13 C -0.118 4.118 14 C -0.186 4.186 15 C 0.099 3.901 16 C -0.485 4.485 17 H 0.070 0.930 18 C 0.036 3.964 19 N -0.833 5.833 20 Si 0.971 3.029 21 H -0.263 1.263 22 H -0.262 1.262 23 H -0.272 1.272 24 C 0.273 3.727 25 O -0.481 6.481 26 N -0.501 5.501 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.076 0.924 30 H 0.166 0.834 31 H 0.154 0.846 32 H 0.428 0.572 33 H 0.104 0.896 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.116 0.884 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.284 0.716 40 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.144 -6.807 -6.891 15.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.027 4.027 3 C -0.173 4.173 4 C -0.135 4.135 5 C -0.020 4.020 6 N -0.300 5.300 7 C 0.309 3.691 8 O -0.415 6.415 9 C -0.106 4.106 10 C -0.186 4.186 11 C -0.109 4.109 12 C -0.255 4.255 13 C -0.136 4.136 14 C -0.206 4.206 15 C 0.097 3.903 16 C -0.515 4.515 17 H 0.088 0.912 18 C -0.177 4.177 19 N -0.460 5.460 20 Si 0.793 3.207 21 H -0.187 1.187 22 H -0.186 1.186 23 H -0.197 1.197 24 C 0.091 3.909 25 O -0.290 6.290 26 N -0.220 5.220 27 H 0.106 0.894 28 H 0.118 0.882 29 H 0.095 0.905 30 H 0.184 0.816 31 H 0.171 0.829 32 H 0.267 0.733 33 H 0.123 0.877 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.134 0.866 37 H 0.123 0.877 38 H 0.112 0.888 39 H 0.095 0.905 40 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -12.678 -6.815 -7.051 16.028 hybrid contribution 1.058 0.105 1.358 1.724 sum -11.621 -6.711 -5.694 14.577 Atomic orbital electron populations 1.20780 0.85794 1.04597 1.04120 1.21551 0.98497 0.86667 0.95996 1.22231 0.93392 1.00636 1.01003 1.22257 0.95566 0.98362 0.97335 1.19086 0.84718 0.94653 1.03526 1.43470 1.03311 1.16293 1.66892 1.21500 0.90995 0.81798 0.74814 1.90568 1.72401 1.34453 1.44099 1.20304 0.88331 0.97934 1.04071 1.19505 1.10163 0.96020 0.92945 1.20761 0.98568 0.93419 0.98161 1.20750 1.10873 0.98604 0.95245 1.20971 1.00420 0.98143 0.94102 1.21289 1.06753 0.94288 0.98233 1.17707 0.88885 0.91787 0.91921 1.19598 1.15464 1.13858 1.02571 0.91203 1.26599 0.93461 0.96631 1.01030 1.69870 1.11595 1.36433 1.28086 0.85328 0.79313 0.78488 0.77611 1.18710 1.18613 1.19664 1.18712 0.86891 0.84383 1.00910 1.84728 1.76397 1.32357 1.35552 1.67021 1.08503 1.31585 1.14911 0.89353 0.88245 0.90503 0.81610 0.82923 0.73284 0.87749 0.86224 0.86324 0.86592 0.87701 0.88840 0.90519 0.72541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.43 10.16 71.24 0.72 -0.70 16 2 C 0.11 2.61 6.78 42.50 0.29 2.90 16 3 C -0.15 -3.70 9.73 22.35 0.22 -3.49 16 4 C -0.11 -3.30 8.92 22.56 0.20 -3.10 16 5 C 0.08 2.38 6.57 38.29 0.25 2.63 16 6 N -0.65 -18.63 5.35 -302.82 -1.62 -20.24 16 7 C 0.52 18.67 7.29 87.66 0.64 19.31 16 8 O -0.54 -23.76 12.89 -3.08 -0.04 -23.80 16 9 C -0.07 -2.37 5.19 29.10 0.15 -2.22 16 10 C -0.18 -8.39 4.43 -19.40 -0.09 -8.48 16 11 C -0.09 -3.87 9.66 22.22 0.21 -3.66 16 12 C -0.24 -10.26 10.05 22.46 0.23 -10.03 16 13 C -0.12 -5.63 10.02 22.22 0.22 -5.40 16 14 C -0.19 -10.02 8.65 22.73 0.20 -9.82 16 15 C 0.10 5.23 5.53 -21.29 -0.12 5.12 16 16 C -0.48 -25.37 8.03 23.46 0.19 -25.19 16 17 H 0.07 3.56 6.81 -2.91 -0.02 3.54 16 18 C 0.04 1.82 5.22 85.26 0.45 2.27 16 19 N -0.83 -43.61 11.00 21.83 0.24 -43.37 16 20 Si 0.97 38.53 29.58 68.60 2.03 40.56 16 21 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 22 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 23 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 24 C 0.27 7.52 7.77 84.94 0.66 8.18 16 25 O -0.48 -10.77 12.91 -90.63 -1.17 -11.94 16 26 N -0.50 -13.79 10.29 -296.53 -3.05 -16.84 16 27 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.10 1.00 8.08 -2.39 -0.02 0.98 16 29 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.17 2.97 8.06 -2.91 -0.02 2.94 16 31 H 0.15 5.41 5.39 -2.91 -0.02 5.39 16 32 H 0.43 9.40 8.23 -92.71 -0.76 8.64 16 33 H 0.10 3.66 7.15 -2.38 -0.02 3.64 16 34 H 0.12 3.28 8.05 -2.39 -0.02 3.27 16 35 H 0.12 4.19 8.06 -2.91 -0.02 4.17 16 36 H 0.12 4.29 8.06 -2.91 -0.02 4.27 16 37 H 0.10 4.45 8.06 -2.91 -0.02 4.43 16 38 H 0.09 5.32 6.38 -2.91 -0.02 5.30 16 39 H 0.28 13.56 8.30 -92.70 -0.77 12.79 16 40 H 0.41 5.83 9.06 -74.06 -0.67 5.16 16 Total: -1.00 -69.65 343.31 0.49 -69.17 By element: Atomic # 1 Polarization: 38.48 SS G_CDS: -0.33 Total: 38.15 kcal Atomic # 6 Polarization: -36.10 SS G_CDS: 4.42 Total: -31.68 kcal Atomic # 7 Polarization: -76.03 SS G_CDS: -4.43 Total: -80.46 kcal Atomic # 8 Polarization: -34.53 SS G_CDS: -1.21 Total: -35.74 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.56 kcal Total: -69.65 0.49 -69.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754516886.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.052 kcal (2) G-P(sol) polarization free energy of solvation -69.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds