Wall clock time and date at job start Fri Apr 10 2020 22:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 120.00043 * 2 1 4 4 H 1.48496 * 109.47191 * 270.00039 * 3 2 1 5 5 H 1.48501 * 109.46981 * 30.00086 * 3 2 1 6 6 H 1.48500 * 109.46794 * 149.99743 * 3 2 1 7 7 C 1.38813 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99890 * 163.07876 * 7 2 1 9 9 N 1.36931 * 120.00220 * 343.08678 * 7 2 1 10 10 C 1.46925 * 120.63201 * 151.82683 * 9 7 2 11 11 C 1.53198 * 108.89335 * 126.29969 * 10 9 7 12 12 C 1.53350 * 109.14641 * 54.57862 * 11 10 9 13 13 C 1.53000 * 109.41773 * 178.67869 * 12 11 10 14 14 N 1.46501 * 109.46914 * 295.12314 * 13 12 11 15 15 C 1.34778 * 120.00231 * 179.97438 * 14 13 12 16 16 O 1.21283 * 119.99768 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00266 * 180.02562 * 15 14 13 18 18 F 1.39899 * 109.47117 * 274.99959 * 17 15 14 19 19 F 1.39900 * 109.47329 * 35.00026 * 17 15 14 20 20 C 1.53001 * 109.47286 * 154.99934 * 17 15 14 21 21 F 1.39900 * 109.47020 * 179.97438 * 20 17 15 22 22 F 1.39899 * 109.47062 * 300.00058 * 20 17 15 23 23 C 1.53044 * 109.60893 * 298.71132 * 12 11 10 24 24 C 1.46925 * 120.62943 * 331.81086 * 9 7 2 25 25 H 0.96996 * 119.99787 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.58983 * 246.15688 * 10 9 7 27 27 H 1.08993 * 109.58892 * 6.44125 * 10 9 7 28 28 H 1.08996 * 109.49640 * 174.65737 * 11 10 9 29 29 H 1.09000 * 109.49939 * 294.75884 * 11 10 9 30 30 H 1.08997 * 109.42600 * 58.75344 * 12 11 10 31 31 H 1.09000 * 109.47417 * 55.12332 * 13 12 11 32 32 H 1.08998 * 109.47314 * 175.12869 * 13 12 11 33 33 H 0.97000 * 120.00186 * 0.02562 * 14 13 12 34 34 H 1.08999 * 109.46939 * 59.99945 * 20 17 15 35 35 H 1.08996 * 109.49900 * 301.42445 * 23 12 11 36 36 H 1.08999 * 109.52516 * 181.34285 * 23 12 11 37 37 H 1.08998 * 109.58495 * 353.41108 * 24 9 7 38 38 H 1.09000 * 109.58924 * 113.69864 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2717 9 7 1.3701 -2.3622 0.3460 10 6 1.8140 -3.6529 -0.1980 11 6 2.0708 -4.6187 0.9632 12 6 0.8133 -4.7005 1.8369 13 6 1.0517 -5.6889 2.9802 14 7 1.2348 -7.0350 2.4318 15 6 1.4609 -8.0748 3.2590 16 8 1.5123 -7.8961 4.4575 17 6 1.6498 -9.4593 2.6949 18 9 0.4005 -10.0584 2.5011 19 9 2.3221 -9.3764 1.4708 20 6 2.4727 -10.3006 3.6727 21 9 2.6475 -11.5861 3.1491 22 9 3.7219 -9.7015 3.8664 23 6 0.4985 -3.3188 2.4148 24 6 0.2264 -2.3401 1.2681 25 1 -0.4849 0.8400 0.0004 26 1 1.0402 -4.0609 -0.8482 27 1 2.7330 -3.5129 -0.7669 28 1 2.3089 -5.6065 0.5688 29 1 2.9059 -4.2543 1.5615 30 1 -0.0270 -5.0411 1.2318 31 1 1.9449 -5.3970 3.5325 32 1 0.1921 -5.6835 3.6504 33 1 1.1940 -7.1779 1.4732 34 1 1.9488 -10.3652 4.6263 35 1 1.3483 -2.9669 2.9996 36 1 -0.3816 -3.3834 3.0546 37 1 0.0994 -1.3343 1.6686 38 1 -0.6773 -2.6386 0.7368 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756952448.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:56 Heat of formation + Delta-G solvation = -217.191839 kcal Electronic energy + Delta-G solvation = -26673.666435 eV Core-core repulsion = 22051.211130 eV Total energy + Delta-G solvation = -4622.455305 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.120 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.44037 -49.19995 -48.08367 -47.58276 -40.20286 -38.00892 -35.38935 -33.09276 -31.29455 -30.73916 -29.81468 -27.32587 -25.03929 -23.76723 -22.36150 -21.43623 -21.17857 -19.62007 -19.08041 -18.97913 -18.71775 -17.40649 -17.26207 -16.81296 -16.31312 -15.53726 -15.35892 -15.10357 -14.79988 -14.70078 -14.53890 -14.23762 -14.09639 -14.02467 -13.89696 -13.66643 -13.56710 -13.25558 -13.13629 -12.52735 -12.47340 -12.04306 -11.94076 -11.43555 -11.05926 -10.74985 -10.62127 -10.59251 -10.33273 -10.28182 -9.97262 -9.69030 -9.54302 -9.45970 -8.51163 -6.71926 -5.83374 -3.25839 1.56523 1.78096 2.36616 3.02829 3.32912 3.34856 3.42238 3.44603 3.49390 3.69227 4.23337 4.32501 4.46327 4.87184 5.03539 5.23371 5.35187 5.49354 5.63285 5.69908 5.86648 5.87754 6.07542 6.22657 6.34168 6.50403 6.56840 6.65017 6.71220 6.80321 6.90432 7.30062 7.35999 7.59758 7.75775 8.40983 9.17220 9.80484 10.36842 11.25318 Molecular weight = 312.12amu Principal moments of inertia in cm(-1) A = 0.034361 B = 0.002718 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.678767 B =10300.064444 C =10398.698716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.145 3.855 11 C -0.130 4.130 12 C -0.092 4.092 13 C 0.119 3.881 14 N -0.692 5.692 15 C 0.488 3.512 16 O -0.499 6.499 17 C 0.237 3.763 18 F -0.158 7.158 19 F -0.166 7.166 20 C 0.252 3.748 21 F -0.180 7.180 22 F -0.172 7.172 23 C -0.132 4.132 24 C 0.171 3.829 25 H 0.254 0.746 26 H 0.017 0.983 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.411 0.589 34 H 0.155 0.845 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.089 0.911 38 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.532 -19.876 6.902 21.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.383 4.383 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.018 3.982 11 C -0.170 4.170 12 C -0.111 4.111 13 C -0.003 4.003 14 N -0.342 5.342 15 C 0.267 3.733 16 O -0.374 6.374 17 C 0.196 3.804 18 F -0.138 7.138 19 F -0.146 7.146 20 C 0.196 3.804 21 F -0.161 7.161 22 F -0.153 7.153 23 C -0.172 4.172 24 C 0.046 3.954 25 H 0.064 0.936 26 H 0.035 0.965 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.247 0.753 34 H 0.172 0.828 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 1.477 -19.570 7.700 21.082 hybrid contribution 0.392 0.577 -0.806 1.066 sum 1.869 -18.993 6.894 20.291 Atomic orbital electron populations 1.70023 1.05278 1.25562 1.53881 1.25047 0.95287 0.98446 1.00825 0.86310 0.79197 0.83613 0.77737 1.21387 1.21535 1.20459 1.19172 0.92551 0.84822 1.41787 0.91734 1.44048 1.35912 1.01517 1.50030 1.20878 0.97674 0.86989 0.92611 1.22171 0.96860 0.98934 0.98990 1.21419 0.99122 0.95359 0.95170 1.21892 1.02452 0.78601 0.97388 1.46072 1.69021 1.08130 1.10994 1.20101 0.80003 0.85364 0.87848 1.90836 1.49434 1.83576 1.13559 1.22469 0.79916 0.94274 0.83739 1.93170 1.40878 1.84455 1.95336 1.93159 1.79721 1.96819 1.44949 1.22451 0.83108 0.76690 0.98110 1.93088 1.95805 1.38578 1.88592 1.93101 1.43146 1.83239 1.95773 1.22183 1.00491 0.94292 1.00222 1.20766 0.88665 0.98168 0.87847 0.93604 0.96527 0.92758 0.93384 0.91926 0.90964 0.90490 0.90697 0.75276 0.82803 0.92213 0.92893 0.89307 0.96353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.64 11.20 55.49 0.62 -25.02 16 2 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 3 Si 0.90 21.30 29.59 -169.99 -5.03 16.27 16 4 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.25 -6.80 9.58 -15.06 -0.14 -6.94 16 8 H 0.06 1.70 7.89 -52.48 -0.41 1.29 16 9 N -0.59 -14.22 2.99 -172.32 -0.52 -14.74 16 10 C 0.15 2.85 6.50 -3.71 -0.02 2.83 16 11 C -0.13 -2.01 5.27 -26.45 -0.14 -2.15 16 12 C -0.09 -1.32 2.19 -90.42 -0.20 -1.52 16 13 C 0.12 1.46 5.07 -4.04 -0.02 1.44 16 14 N -0.69 -7.59 5.21 -60.29 -0.31 -7.91 16 15 C 0.49 5.55 6.98 -10.99 -0.08 5.47 16 16 O -0.50 -6.70 16.04 5.56 0.09 -6.61 16 17 C 0.24 2.32 2.02 -27.88 -0.06 2.27 16 18 F -0.16 -1.51 17.03 2.25 0.04 -1.47 16 19 F -0.17 -1.71 16.47 2.25 0.04 -1.68 16 20 C 0.25 2.21 4.39 37.16 0.16 2.37 16 21 F -0.18 -1.69 17.30 2.25 0.04 -1.65 16 22 F -0.17 -1.83 16.97 2.25 0.04 -1.79 16 23 C -0.13 -2.27 5.36 -26.61 -0.14 -2.41 16 24 C 0.17 3.86 5.30 -3.71 -0.02 3.84 16 25 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 26 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 28 H 0.05 0.62 7.16 -51.93 -0.37 0.24 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.41 3.94 7.21 -40.82 -0.29 3.65 16 34 H 0.15 0.92 7.87 -51.93 -0.41 0.51 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.09 2.27 6.06 -51.93 -0.31 1.96 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 329.25 15.07 4.96 4.96 Total: -1.00 -29.74 329.25 -5.51 -35.25 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: -4.73 Total: -0.78 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -0.74 Total: 5.17 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: -0.21 Total: -47.66 kcal Atomic # 8 Polarization: -6.70 SS G_CDS: 0.09 Total: -6.61 kcal Atomic # 9 Polarization: -6.74 SS G_CDS: 0.15 Total: -6.59 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.74 -5.51 -35.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756952448.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.946 kcal (2) G-P(sol) polarization free energy of solvation -29.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds