Wall clock time and date at job start Fri Apr 10 2020 22:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 120.00043 * 2 1 4 4 H 1.48496 * 109.47191 * 270.00039 * 3 2 1 5 5 H 1.48501 * 109.46981 * 30.00086 * 3 2 1 6 6 H 1.48500 * 109.46794 * 149.99743 * 3 2 1 7 7 C 1.38813 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99890 * 163.07876 * 7 2 1 9 9 N 1.36931 * 120.00220 * 343.08678 * 7 2 1 10 10 C 1.46925 * 120.63201 * 151.82683 * 9 7 2 11 11 C 1.53198 * 108.89335 * 126.29969 * 10 9 7 12 12 C 1.53350 * 109.14641 * 54.57862 * 11 10 9 13 13 C 1.53000 * 109.41773 * 178.67869 * 12 11 10 14 14 N 1.46501 * 109.46914 * 295.12314 * 13 12 11 15 15 C 1.34778 * 120.00231 * 179.97438 * 14 13 12 16 16 O 1.21283 * 119.99768 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00266 * 180.02562 * 15 14 13 18 18 F 1.39899 * 109.47117 * 274.99959 * 17 15 14 19 19 F 1.39900 * 109.47329 * 35.00026 * 17 15 14 20 20 C 1.53001 * 109.47286 * 154.99934 * 17 15 14 21 21 F 1.39900 * 109.47020 * 179.97438 * 20 17 15 22 22 F 1.39899 * 109.47062 * 300.00058 * 20 17 15 23 23 C 1.53044 * 109.60893 * 298.71132 * 12 11 10 24 24 C 1.46925 * 120.62943 * 331.81086 * 9 7 2 25 25 H 0.96996 * 119.99787 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.58983 * 246.15688 * 10 9 7 27 27 H 1.08993 * 109.58892 * 6.44125 * 10 9 7 28 28 H 1.08996 * 109.49640 * 174.65737 * 11 10 9 29 29 H 1.09000 * 109.49939 * 294.75884 * 11 10 9 30 30 H 1.08997 * 109.42600 * 58.75344 * 12 11 10 31 31 H 1.09000 * 109.47417 * 55.12332 * 13 12 11 32 32 H 1.08998 * 109.47314 * 175.12869 * 13 12 11 33 33 H 0.97000 * 120.00186 * 0.02562 * 14 13 12 34 34 H 1.08999 * 109.46939 * 59.99945 * 20 17 15 35 35 H 1.08996 * 109.49900 * 301.42445 * 23 12 11 36 36 H 1.08999 * 109.52516 * 181.34285 * 23 12 11 37 37 H 1.08998 * 109.58495 * 353.41108 * 24 9 7 38 38 H 1.09000 * 109.58924 * 113.69864 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2717 9 7 1.3701 -2.3622 0.3460 10 6 1.8140 -3.6529 -0.1980 11 6 2.0708 -4.6187 0.9632 12 6 0.8133 -4.7005 1.8369 13 6 1.0517 -5.6889 2.9802 14 7 1.2348 -7.0350 2.4318 15 6 1.4609 -8.0748 3.2590 16 8 1.5123 -7.8961 4.4575 17 6 1.6498 -9.4593 2.6949 18 9 0.4005 -10.0584 2.5011 19 9 2.3221 -9.3764 1.4708 20 6 2.4727 -10.3006 3.6727 21 9 2.6475 -11.5861 3.1491 22 9 3.7219 -9.7015 3.8664 23 6 0.4985 -3.3188 2.4148 24 6 0.2264 -2.3401 1.2681 25 1 -0.4849 0.8400 0.0004 26 1 1.0402 -4.0609 -0.8482 27 1 2.7330 -3.5129 -0.7669 28 1 2.3089 -5.6065 0.5688 29 1 2.9059 -4.2543 1.5615 30 1 -0.0270 -5.0411 1.2318 31 1 1.9449 -5.3970 3.5325 32 1 0.1921 -5.6835 3.6504 33 1 1.1940 -7.1779 1.4732 34 1 1.9488 -10.3652 4.6263 35 1 1.3483 -2.9669 2.9996 36 1 -0.3816 -3.3834 3.0546 37 1 0.0994 -1.3343 1.6686 38 1 -0.6773 -2.6386 0.7368 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000756952448.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:56 Heat of formation + Delta-G solvation = -235.482540 kcal Electronic energy + Delta-G solvation = -26674.459579 eV Core-core repulsion = 22051.211130 eV Total energy + Delta-G solvation = -4623.248450 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 312.120 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -51.18615 -49.93894 -48.83872 -48.31869 -41.14753 -39.41917 -36.67820 -34.65315 -32.70034 -31.82972 -31.37808 -28.69749 -26.36752 -25.04384 -23.82844 -22.76745 -22.18757 -20.87674 -20.14548 -19.76803 -19.48484 -18.67928 -18.11301 -18.00129 -17.26291 -16.87576 -16.49089 -16.17909 -15.85075 -15.67451 -15.48979 -15.30818 -15.27120 -15.03699 -14.99932 -14.79829 -14.74604 -14.63430 -14.08633 -13.91861 -13.84592 -13.48961 -13.00931 -12.85439 -12.68054 -12.55993 -12.28377 -12.02906 -11.85078 -11.68242 -11.47408 -11.16589 -11.10670 -10.53488 -10.43949 -8.66551 -7.87577 -5.32244 0.69955 0.97219 1.46161 1.48165 1.57435 1.59870 2.25189 2.51501 2.63852 2.75451 2.95833 3.27218 3.54485 3.64199 3.69529 3.77012 3.88651 4.04160 4.46383 4.52858 4.62956 4.67733 4.74844 4.90041 4.95194 5.04226 5.13437 5.27060 5.28699 5.41645 5.55041 5.66302 5.79557 5.90794 6.40298 6.50615 7.16411 7.88620 8.38639 9.18523 Molecular weight = 312.12amu Principal moments of inertia in cm(-1) A = 0.034361 B = 0.002718 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.678767 B =10300.064444 C =10398.698716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.050 4.050 3 Si 0.964 3.036 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.271 1.271 7 C -0.263 4.263 8 H 0.064 0.936 9 N -0.612 5.612 10 C 0.139 3.861 11 C -0.118 4.118 12 C -0.081 4.081 13 C 0.131 3.869 14 N -0.688 5.688 15 C 0.490 3.510 16 O -0.519 6.519 17 C 0.243 3.757 18 F -0.155 7.155 19 F -0.169 7.169 20 C 0.251 3.749 21 F -0.183 7.183 22 F -0.183 7.183 23 C -0.121 4.121 24 C 0.176 3.824 25 H 0.250 0.750 26 H 0.017 0.983 27 H 0.049 0.951 28 H 0.081 0.919 29 H 0.054 0.946 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.419 0.581 34 H 0.185 0.815 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.051 0.949 38 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.099 -21.523 7.593 22.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.245 4.245 3 Si 0.792 3.208 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.196 1.196 7 C -0.394 4.394 8 H 0.081 0.919 9 N -0.336 5.336 10 C 0.013 3.987 11 C -0.157 4.157 12 C -0.100 4.100 13 C 0.009 3.991 14 N -0.339 5.339 15 C 0.270 3.730 16 O -0.395 6.395 17 C 0.202 3.798 18 F -0.136 7.136 19 F -0.150 7.150 20 C 0.196 3.804 21 F -0.164 7.164 22 F -0.164 7.164 23 C -0.160 4.160 24 C 0.050 3.950 25 H 0.059 0.941 26 H 0.035 0.965 27 H 0.068 0.932 28 H 0.100 0.900 29 H 0.073 0.927 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.257 0.743 34 H 0.201 0.799 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.070 0.930 38 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges 2.061 -21.255 8.376 22.939 hybrid contribution 0.205 1.049 -1.083 1.521 sum 2.267 -20.207 7.293 21.602 Atomic orbital electron populations 1.70169 1.06577 1.25809 1.55454 1.25761 0.96029 1.01388 1.01364 0.85335 0.78132 0.79794 0.77536 1.21232 1.21855 1.19641 1.19490 0.92772 0.86228 1.40874 0.91860 1.44337 1.36053 1.02334 1.50901 1.21059 0.97225 0.86084 0.94295 1.22022 0.97073 0.99261 0.97340 1.21247 0.98804 0.94264 0.95716 1.21609 1.02708 0.78607 0.96202 1.45971 1.68825 1.07625 1.11476 1.20261 0.79385 0.85846 0.87538 1.90832 1.50270 1.84022 1.14420 1.22369 0.80176 0.93549 0.83737 1.93181 1.40769 1.84294 1.95319 1.93156 1.79789 1.96803 1.45229 1.22754 0.82621 0.76095 0.98939 1.93082 1.95792 1.38760 1.88775 1.93077 1.44026 1.83471 1.95822 1.21962 1.01272 0.94555 0.98225 1.20587 0.87722 0.97652 0.89009 0.94126 0.96509 0.93203 0.90007 0.92674 0.90238 0.90812 0.89883 0.74330 0.79851 0.92764 0.90715 0.93043 0.98367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.54 11.20 21.65 0.24 -54.30 16 2 C -0.05 -2.76 4.92 84.86 0.42 -2.35 16 3 Si 0.96 44.45 29.59 68.60 2.03 46.48 16 4 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 6 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 7 C -0.26 -14.30 9.58 84.03 0.81 -13.49 16 8 H 0.06 3.37 7.89 -2.91 -0.02 3.35 16 9 N -0.61 -29.70 2.99 -699.09 -2.09 -31.79 16 10 C 0.14 5.35 6.50 86.36 0.56 5.91 16 11 C -0.12 -3.38 5.27 30.78 0.16 -3.22 16 12 C -0.08 -2.15 2.19 -10.66 -0.02 -2.17 16 13 C 0.13 2.84 5.07 86.38 0.44 3.28 16 14 N -0.69 -13.02 5.21 -463.06 -2.41 -15.43 16 15 C 0.49 9.82 6.98 87.66 0.61 10.43 16 16 O -0.52 -12.62 16.04 -3.04 -0.05 -12.67 16 17 C 0.24 4.14 2.02 29.85 0.06 4.20 16 18 F -0.15 -2.58 17.03 44.97 0.77 -1.81 16 19 F -0.17 -3.08 16.47 44.97 0.74 -2.34 16 20 C 0.25 3.80 4.39 71.98 0.32 4.11 16 21 F -0.18 -3.05 17.30 44.97 0.78 -2.28 16 22 F -0.18 -3.53 16.97 44.97 0.76 -2.76 16 23 C -0.12 -4.01 5.36 30.68 0.16 -3.84 16 24 C 0.18 8.05 5.30 86.36 0.46 8.51 16 25 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 26 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.05 1.93 7.93 -2.39 -0.02 1.91 16 28 H 0.08 1.82 7.16 -2.39 -0.02 1.80 16 29 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.08 2.04 8.14 -2.39 -0.02 2.03 16 31 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.42 6.63 7.21 -92.71 -0.67 5.96 16 34 H 0.18 1.67 7.87 -2.39 -0.02 1.65 16 35 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.05 2.72 6.06 -2.39 -0.01 2.71 16 38 H 0.00 -0.09 8.14 -2.39 -0.02 -0.10 16 Total: -1.00 -64.76 329.25 5.17 -59.58 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: 0.43 Total: 5.95 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: 3.97 Total: 11.37 kcal Atomic # 7 Polarization: -97.26 SS G_CDS: -4.26 Total: -101.52 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: -0.05 Total: -12.67 kcal Atomic # 9 Polarization: -12.24 SS G_CDS: 3.05 Total: -9.20 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -64.76 5.17 -59.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756952448.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.898 kcal (2) G-P(sol) polarization free energy of solvation -64.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -240.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -235.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds