Wall clock time and date at job start Fri Apr 10 2020 22:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30646 * 1 3 3 Si 1.86799 * 120.00380 * 2 1 4 4 H 1.48504 * 109.46860 * 269.99843 * 3 2 1 5 5 H 1.48500 * 109.46990 * 29.99474 * 3 2 1 6 6 H 1.48492 * 109.47636 * 149.99844 * 3 2 1 7 7 C 1.40229 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00396 * 197.86759 * 7 2 1 9 9 C 1.41113 * 119.99993 * 17.87020 * 7 2 1 10 10 C 1.40885 * 120.10691 * 204.62946 * 9 7 2 11 11 C 1.36308 * 119.89405 * 180.02562 * 10 9 7 12 12 C 1.40014 * 120.10644 * 0.02562 * 11 10 9 13 13 C 1.47642 * 119.89209 * 179.97438 * 12 11 10 14 14 O 1.21577 * 120.00626 * 359.97438 * 13 12 11 15 15 N 1.34785 * 119.99645 * 180.02562 * 13 12 11 16 16 C 1.46496 * 119.99867 * 180.02562 * 15 13 12 17 17 C 1.53004 * 109.47144 * 179.97438 * 16 15 13 18 18 O 1.42894 * 109.47164 * 64.99781 * 17 16 15 19 19 C 1.35918 * 117.00006 * 180.02562 * 18 17 16 20 20 C 1.39140 * 120.47000 * 180.23425 * 19 18 17 21 21 C 1.38540 * 118.36727 * 180.23967 * 20 19 18 22 22 C 1.38257 * 119.22219 * 359.48793 * 21 20 19 23 23 N 1.31840 * 120.88441 * 0.30000 * 22 21 20 24 24 C 1.31834 * 121.78723 * 359.97055 * 23 22 21 25 25 C 1.40008 * 120.20970 * 0.25529 * 12 11 10 26 26 C 1.36319 * 120.10491 * 359.48013 * 25 12 11 27 27 H 0.97004 * 119.99497 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.05119 * 359.97438 * 10 9 7 29 29 H 1.08001 * 119.94548 * 179.97438 * 11 10 9 30 30 H 0.96999 * 120.00051 * 359.97438 * 15 13 12 31 31 H 1.08998 * 109.47632 * 59.99547 * 16 15 13 32 32 H 1.08998 * 109.47326 * 299.99507 * 16 15 13 33 33 H 1.09005 * 109.46519 * 304.99709 * 17 16 15 34 34 H 1.08999 * 109.46897 * 184.99936 * 17 16 15 35 35 H 1.07998 * 120.81479 * 0.02906 * 20 19 18 36 36 H 1.08000 * 120.38519 * 179.75940 * 21 20 19 37 37 H 1.08001 * 119.54995 * 180.27155 * 22 21 20 38 38 H 1.08004 * 119.66409 * 180.02562 * 24 23 22 39 39 H 1.07997 * 119.94860 * 179.74605 * 25 12 11 40 40 H 1.07999 * 120.05205 * 180.23393 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2406 1.6177 0.0000 4 1 2.4881 2.0463 -1.4001 5 1 1.4380 2.6527 0.6999 6 1 3.5380 1.4402 0.7000 7 6 2.0076 -1.2144 0.0005 8 1 3.0485 -1.2369 0.2875 9 6 1.3531 -2.4072 -0.3739 10 6 1.8266 -3.6495 0.0922 11 6 1.1914 -4.7990 -0.2726 12 6 0.0703 -4.7465 -1.1097 13 6 -0.6138 -5.9946 -1.5024 14 8 -0.2033 -7.0656 -1.0995 15 7 -1.6929 -5.9466 -2.3086 16 6 -2.3721 -7.1849 -2.6978 17 6 -3.5564 -6.8527 -3.6078 18 8 -3.0752 -6.2858 -4.8280 19 6 -4.0059 -5.9315 -5.7530 20 6 -3.6171 -5.3773 -6.9687 21 6 -4.6023 -5.0275 -7.8777 22 6 -5.9282 -5.2484 -7.5544 23 7 -6.2626 -5.7797 -6.3950 24 6 -5.3565 -6.1215 -5.5006 25 6 -0.4006 -3.5148 -1.5803 26 6 0.2249 -2.3595 -1.2165 27 1 -0.4849 0.8401 -0.0004 28 1 2.6921 -3.6910 0.7369 29 1 1.5540 -5.7518 0.0839 30 1 -2.0203 -5.0921 -2.6304 31 1 -2.7323 -7.6976 -1.8059 32 1 -1.6738 -7.8302 -3.2308 33 1 -4.2095 -6.1375 -3.1075 34 1 -4.1141 -7.7636 -3.8254 35 1 -2.5731 -5.2207 -7.1966 36 1 -4.3373 -4.5913 -8.8295 37 1 -6.7003 -4.9817 -8.2609 38 1 -5.6688 -6.5546 -4.5618 39 1 -1.2632 -3.4796 -2.2291 40 1 -0.1413 -1.4096 -1.5769 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759106008.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:59 Heat of formation + Delta-G solvation = -25.666537 kcal Electronic energy + Delta-G solvation = -23846.198550 eV Core-core repulsion = 20204.674370 eV Total energy + Delta-G solvation = -3641.524180 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.86606 -39.21920 -38.36846 -37.11066 -34.51455 -33.88690 -32.63757 -31.00258 -30.29326 -29.47455 -29.05139 -25.98036 -24.42302 -23.51535 -22.50384 -21.63683 -20.88368 -19.71384 -18.63890 -17.55217 -17.27545 -16.94238 -16.54342 -16.42173 -15.53328 -15.13335 -14.89350 -14.48125 -14.16264 -13.97639 -13.85248 -13.51796 -13.24509 -13.21216 -12.78379 -12.71367 -12.32778 -12.09916 -11.95408 -11.92149 -11.49845 -11.35280 -11.29761 -10.97140 -10.66614 -10.05956 -10.00415 -9.73942 -9.57659 -9.37397 -9.02063 -8.73802 -8.67773 -7.73838 -7.56214 -7.05378 -4.62098 0.82209 1.01284 2.20951 2.77168 2.90555 2.94635 2.97054 3.02248 3.51903 3.70064 3.72655 3.84569 4.18524 4.35057 4.51251 4.54662 4.66466 4.79750 4.80582 4.94620 5.08625 5.24311 5.52493 5.58652 5.64721 5.72863 5.81615 6.02575 6.07700 6.22462 6.30239 6.75223 6.81103 6.83963 6.95407 7.03023 7.11664 7.41842 7.62947 7.65762 7.76954 7.84479 8.05344 8.18727 8.38296 8.61422 8.73592 9.02846 9.86641 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.013440 B = 0.002840 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.833972 B = 9857.280785 C =11518.550935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.442 4.442 8 H 0.085 0.915 9 C 0.129 3.871 10 C -0.239 4.239 11 C -0.022 4.022 12 C -0.285 4.285 13 C 0.573 3.427 14 O -0.576 6.576 15 N -0.740 5.740 16 C 0.127 3.873 17 C 0.044 3.956 18 O -0.302 6.302 19 C 0.084 3.916 20 C -0.109 4.109 21 C -0.131 4.131 22 C 0.055 3.945 23 N -0.452 5.452 24 C 0.014 3.986 25 C -0.062 4.062 26 C -0.178 4.178 27 H 0.287 0.713 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.400 0.600 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.144 0.856 36 H 0.142 0.858 37 H 0.157 0.843 38 H 0.158 0.842 39 H 0.088 0.912 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.790 -5.308 -11.863 16.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.147 4.147 3 Si 0.738 3.262 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.470 4.470 8 H 0.103 0.897 9 C 0.125 3.875 10 C -0.259 4.259 11 C -0.041 4.041 12 C -0.289 4.289 13 C 0.368 3.632 14 O -0.458 6.458 15 N -0.395 5.395 16 C 0.003 3.997 17 C -0.031 4.031 18 O -0.214 6.214 19 C 0.036 3.964 20 C -0.135 4.135 21 C -0.151 4.151 22 C -0.103 4.103 23 N -0.161 5.161 24 C -0.144 4.144 25 C -0.081 4.081 26 C -0.197 4.197 27 H 0.098 0.902 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.236 0.764 31 H 0.104 0.896 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.162 0.838 36 H 0.159 0.841 37 H 0.174 0.826 38 H 0.175 0.825 39 H 0.106 0.894 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -10.379 -6.051 -11.356 16.531 hybrid contribution 0.745 1.307 -0.250 1.525 sum -9.634 -4.744 -11.605 15.811 Atomic orbital electron populations 1.69746 1.07919 1.30058 1.31711 1.26106 0.94818 1.01906 0.91892 0.86200 0.80581 0.79791 0.79658 1.18922 1.20012 1.18266 1.19866 0.98452 0.91179 1.37489 0.89670 1.17793 0.90362 0.92188 0.87122 1.20717 1.04614 0.92642 1.07878 1.20361 0.92895 0.97158 0.93672 1.18869 1.04582 0.90972 1.14494 1.18587 0.78505 0.89688 0.76439 1.90632 1.66449 1.31711 1.57055 1.45854 1.32138 1.08718 1.52764 1.21220 0.92988 0.88752 0.96725 1.23254 0.97894 0.98803 0.83190 1.86190 1.32951 1.76200 1.26048 1.20113 0.89566 0.96066 0.90608 1.21027 1.01478 0.99556 0.91477 1.22044 0.93496 0.99372 1.00195 1.22658 0.95262 0.98191 0.94182 1.67509 1.37689 1.08771 1.02112 1.22943 0.88091 1.03060 1.00294 1.20466 0.97365 0.92607 0.97650 1.20973 0.99952 0.96892 1.01930 0.90224 0.88357 0.88083 0.76447 0.89573 0.90763 0.90839 0.90217 0.83817 0.84052 0.82586 0.82494 0.89416 0.86222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.39 10.96 55.56 0.61 -17.78 16 2 C 0.07 1.72 5.13 -17.31 -0.09 1.63 16 3 Si 0.91 17.19 29.60 -169.99 -5.03 12.16 16 4 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 5 H -0.28 -5.06 7.11 56.52 0.40 -4.66 16 6 H -0.26 -4.84 7.11 56.52 0.40 -4.43 16 7 C -0.44 -10.96 9.04 -37.74 -0.34 -11.30 16 8 H 0.09 2.02 7.91 -52.49 -0.42 1.60 16 9 C 0.13 3.27 5.57 -106.80 -0.60 2.67 16 10 C -0.24 -5.77 9.73 -39.28 -0.38 -6.16 16 11 C -0.02 -0.51 9.52 -39.61 -0.38 -0.89 16 12 C -0.28 -6.49 5.89 -104.73 -0.62 -7.10 16 13 C 0.57 12.05 7.76 -12.42 -0.10 11.95 16 14 O -0.58 -13.52 16.32 5.30 0.09 -13.43 16 15 N -0.74 -12.09 5.45 -61.32 -0.33 -12.43 16 16 C 0.13 1.62 6.06 -4.04 -0.02 1.60 16 17 C 0.04 0.42 4.88 37.16 0.18 0.60 16 18 O -0.30 -3.52 10.10 -19.48 -0.20 -3.71 16 19 C 0.08 0.92 6.71 -39.07 -0.26 0.66 16 20 C -0.11 -1.07 10.13 -39.14 -0.40 -1.46 16 21 C -0.13 -1.07 10.11 -39.46 -0.40 -1.46 16 22 C 0.05 0.49 11.18 -17.54 -0.20 0.30 16 23 N -0.45 -5.05 10.35 -13.13 -0.14 -5.18 16 24 C 0.01 0.15 10.22 -17.38 -0.18 -0.03 16 25 C -0.06 -1.37 9.47 -39.61 -0.38 -1.74 16 26 C -0.18 -4.36 8.64 -39.27 -0.34 -4.70 16 27 H 0.29 6.14 8.29 -40.82 -0.34 5.80 16 28 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 29 H 0.10 2.29 7.63 -52.49 -0.40 1.89 16 30 H 0.40 6.07 6.47 -40.82 -0.26 5.81 16 31 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.07 0.63 7.68 -51.93 -0.40 0.23 16 34 H 0.08 0.57 7.68 -51.93 -0.40 0.17 16 35 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 36 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 37 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.16 1.32 6.32 -52.48 -0.33 0.99 16 39 H 0.09 1.67 6.37 -52.49 -0.33 1.33 16 40 H 0.12 2.97 6.16 -52.49 -0.32 2.64 16 LS Contribution 347.18 15.07 5.23 5.23 Total: -1.00 -30.26 347.18 -8.80 -39.06 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -4.54 Total: 11.52 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: -4.49 Total: -15.43 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: 0.14 Total: -35.39 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.11 Total: -17.15 kcal Atomic # 14 Polarization: 17.19 SS G_CDS: -5.03 Total: 12.16 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.26 -8.80 -39.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759106008.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.389 kcal (2) G-P(sol) polarization free energy of solvation -30.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds