Wall clock time and date at job start Fri Apr 10 2020 22:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30646 * 1 3 3 Si 1.86799 * 120.00380 * 2 1 4 4 H 1.48504 * 109.46860 * 269.99843 * 3 2 1 5 5 H 1.48500 * 109.46990 * 29.99474 * 3 2 1 6 6 H 1.48492 * 109.47636 * 149.99844 * 3 2 1 7 7 C 1.40229 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00396 * 197.86759 * 7 2 1 9 9 C 1.41113 * 119.99993 * 17.87020 * 7 2 1 10 10 C 1.40885 * 120.10691 * 204.62946 * 9 7 2 11 11 C 1.36308 * 119.89405 * 180.02562 * 10 9 7 12 12 C 1.40014 * 120.10644 * 0.02562 * 11 10 9 13 13 C 1.47642 * 119.89209 * 179.97438 * 12 11 10 14 14 O 1.21577 * 120.00626 * 359.97438 * 13 12 11 15 15 N 1.34785 * 119.99645 * 180.02562 * 13 12 11 16 16 C 1.46496 * 119.99867 * 180.02562 * 15 13 12 17 17 C 1.53004 * 109.47144 * 179.97438 * 16 15 13 18 18 O 1.42894 * 109.47164 * 64.99781 * 17 16 15 19 19 C 1.35918 * 117.00006 * 180.02562 * 18 17 16 20 20 C 1.39140 * 120.47000 * 180.23425 * 19 18 17 21 21 C 1.38540 * 118.36727 * 180.23967 * 20 19 18 22 22 C 1.38257 * 119.22219 * 359.48793 * 21 20 19 23 23 N 1.31840 * 120.88441 * 0.30000 * 22 21 20 24 24 C 1.31834 * 121.78723 * 359.97055 * 23 22 21 25 25 C 1.40008 * 120.20970 * 0.25529 * 12 11 10 26 26 C 1.36319 * 120.10491 * 359.48013 * 25 12 11 27 27 H 0.97004 * 119.99497 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.05119 * 359.97438 * 10 9 7 29 29 H 1.08001 * 119.94548 * 179.97438 * 11 10 9 30 30 H 0.96999 * 120.00051 * 359.97438 * 15 13 12 31 31 H 1.08998 * 109.47632 * 59.99547 * 16 15 13 32 32 H 1.08998 * 109.47326 * 299.99507 * 16 15 13 33 33 H 1.09005 * 109.46519 * 304.99709 * 17 16 15 34 34 H 1.08999 * 109.46897 * 184.99936 * 17 16 15 35 35 H 1.07998 * 120.81479 * 0.02906 * 20 19 18 36 36 H 1.08000 * 120.38519 * 179.75940 * 21 20 19 37 37 H 1.08001 * 119.54995 * 180.27155 * 22 21 20 38 38 H 1.08004 * 119.66409 * 180.02562 * 24 23 22 39 39 H 1.07997 * 119.94860 * 179.74605 * 25 12 11 40 40 H 1.07999 * 120.05205 * 180.23393 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2406 1.6177 0.0000 4 1 2.4881 2.0463 -1.4001 5 1 1.4380 2.6527 0.6999 6 1 3.5380 1.4402 0.7000 7 6 2.0076 -1.2144 0.0005 8 1 3.0485 -1.2369 0.2875 9 6 1.3531 -2.4072 -0.3739 10 6 1.8266 -3.6495 0.0922 11 6 1.1914 -4.7990 -0.2726 12 6 0.0703 -4.7465 -1.1097 13 6 -0.6138 -5.9946 -1.5024 14 8 -0.2033 -7.0656 -1.0995 15 7 -1.6929 -5.9466 -2.3086 16 6 -2.3721 -7.1849 -2.6978 17 6 -3.5564 -6.8527 -3.6078 18 8 -3.0752 -6.2858 -4.8280 19 6 -4.0059 -5.9315 -5.7530 20 6 -3.6171 -5.3773 -6.9687 21 6 -4.6023 -5.0275 -7.8777 22 6 -5.9282 -5.2484 -7.5544 23 7 -6.2626 -5.7797 -6.3950 24 6 -5.3565 -6.1215 -5.5006 25 6 -0.4006 -3.5148 -1.5803 26 6 0.2249 -2.3595 -1.2165 27 1 -0.4849 0.8401 -0.0004 28 1 2.6921 -3.6910 0.7369 29 1 1.5540 -5.7518 0.0839 30 1 -2.0203 -5.0921 -2.6304 31 1 -2.7323 -7.6976 -1.8059 32 1 -1.6738 -7.8302 -3.2308 33 1 -4.2095 -6.1375 -3.1075 34 1 -4.1141 -7.7636 -3.8254 35 1 -2.5731 -5.2207 -7.1966 36 1 -4.3373 -4.5913 -8.8295 37 1 -6.7003 -4.9817 -8.2609 38 1 -5.6688 -6.5546 -4.5618 39 1 -1.2632 -3.4796 -2.2291 40 1 -0.1413 -1.4096 -1.5769 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759106008.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:42:58 Heat of formation + Delta-G solvation = -44.017186 kcal Electronic energy + Delta-G solvation = -23846.994294 eV Core-core repulsion = 20204.674370 eV Total energy + Delta-G solvation = -3642.319924 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.61316 -40.76432 -39.31333 -38.81271 -35.86258 -35.67508 -33.38642 -32.39232 -31.39874 -31.27963 -30.21329 -27.66897 -25.35771 -24.29916 -23.77683 -23.00446 -22.57981 -21.33190 -19.40080 -19.36752 -18.61969 -17.70967 -17.58417 -17.43281 -17.09434 -16.43553 -16.02501 -15.75971 -15.50719 -15.35194 -15.06410 -14.70846 -14.54354 -14.31546 -14.05257 -13.95298 -13.78127 -13.65274 -13.22306 -13.05567 -12.87663 -12.75304 -12.62155 -12.39664 -12.27795 -11.76880 -11.37766 -11.13328 -10.75713 -10.67466 -10.45289 -10.10667 -9.58348 -9.47179 -9.41366 -8.80113 -6.49015 0.14139 0.28873 0.43323 1.14287 1.38630 1.43179 1.53133 1.99829 2.12390 2.17313 2.37581 2.78077 2.82130 3.52138 3.60028 3.68522 3.76255 4.00966 4.02620 4.11005 4.23501 4.27892 4.31980 4.38743 4.44353 4.62209 4.67652 4.78344 4.91748 5.00747 5.02472 5.15177 5.15492 5.29142 5.50314 5.57438 5.58905 5.81256 5.93291 5.98822 6.20180 6.22008 6.53251 6.66084 6.76489 6.88131 6.96005 7.41370 8.15111 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.013440 B = 0.002840 C = 0.002430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.833972 B = 9857.280785 C =11518.550935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.038 3.962 3 Si 0.988 3.012 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.257 1.257 7 C -0.473 4.473 8 H 0.085 0.915 9 C 0.101 3.899 10 C -0.253 4.253 11 C -0.033 4.033 12 C -0.294 4.294 13 C 0.572 3.428 14 O -0.604 6.604 15 N -0.725 5.725 16 C 0.124 3.876 17 C 0.049 3.951 18 O -0.321 6.321 19 C 0.069 3.931 20 C -0.124 4.124 21 C -0.124 4.124 22 C 0.048 3.952 23 N -0.478 5.478 24 C 0.005 3.995 25 C -0.053 4.053 26 C -0.198 4.198 27 H 0.297 0.703 28 H 0.105 0.895 29 H 0.104 0.896 30 H 0.407 0.593 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.149 0.851 36 H 0.173 0.827 37 H 0.183 0.817 38 H 0.172 0.828 39 H 0.120 0.880 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.025 -4.596 -13.239 17.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.181 4.181 3 Si 0.808 3.192 4 H -0.183 1.183 5 H -0.189 1.189 6 H -0.181 1.181 7 C -0.500 4.500 8 H 0.104 0.896 9 C 0.098 3.902 10 C -0.273 4.273 11 C -0.052 4.052 12 C -0.298 4.298 13 C 0.366 3.634 14 O -0.489 6.489 15 N -0.377 5.377 16 C 0.000 4.000 17 C -0.026 4.026 18 O -0.234 6.234 19 C 0.021 3.979 20 C -0.150 4.150 21 C -0.143 4.143 22 C -0.109 4.109 23 N -0.188 5.188 24 C -0.152 4.152 25 C -0.072 4.072 26 C -0.217 4.217 27 H 0.108 0.892 28 H 0.123 0.877 29 H 0.122 0.878 30 H 0.244 0.756 31 H 0.115 0.885 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.127 0.873 35 H 0.167 0.833 36 H 0.190 0.810 37 H 0.199 0.801 38 H 0.189 0.811 39 H 0.137 0.863 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.654 -5.353 -12.753 18.086 hybrid contribution 1.046 1.010 0.104 1.457 sum -10.609 -4.343 -12.648 17.070 Atomic orbital electron populations 1.69765 1.09236 1.31613 1.31497 1.26931 0.95553 1.04836 0.90814 0.85101 0.79094 0.75196 0.79829 1.18333 1.18917 1.18110 1.20125 0.98780 0.92206 1.38926 0.89646 1.18140 0.91233 0.92919 0.87891 1.20863 1.05205 0.92747 1.08447 1.20521 0.93469 0.97091 0.94114 1.19182 1.04444 0.92215 1.14005 1.18360 0.79494 0.88487 0.77080 1.90613 1.67583 1.32291 1.58418 1.45743 1.30590 1.10557 1.50843 1.21446 0.93686 0.86996 0.97823 1.23273 0.96437 1.00573 0.82296 1.86141 1.33803 1.76743 1.26713 1.20257 0.89690 0.97012 0.90934 1.21330 1.02321 0.99702 0.91669 1.22381 0.92769 0.98251 1.00940 1.23189 0.96468 0.97288 0.93982 1.67540 1.38308 1.09820 1.03124 1.23166 0.87912 1.03236 1.00917 1.20694 0.97713 0.91622 0.97181 1.21003 1.00590 0.97361 1.02794 0.89190 0.87732 0.87783 0.75644 0.88544 0.91602 0.89485 0.87267 0.83324 0.80968 0.80050 0.81073 0.86271 0.86922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -38.07 10.96 21.87 0.24 -37.83 16 2 C 0.04 1.75 5.13 85.35 0.44 2.19 16 3 Si 0.99 34.70 29.60 68.60 2.03 36.73 16 4 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 5 H -0.26 -8.79 7.11 99.48 0.71 -8.09 16 6 H -0.26 -8.90 7.11 99.48 0.71 -8.20 16 7 C -0.47 -23.90 9.04 23.46 0.21 -23.69 16 8 H 0.09 4.14 7.91 -2.91 -0.02 4.12 16 9 C 0.10 5.28 5.57 -21.28 -0.12 5.16 16 10 C -0.25 -12.59 9.73 22.47 0.22 -12.38 16 11 C -0.03 -1.58 9.52 22.25 0.21 -1.36 16 12 C -0.29 -13.43 5.89 -19.93 -0.12 -13.55 16 13 C 0.57 23.79 7.76 86.73 0.67 24.47 16 14 O -0.60 -28.29 16.32 -3.96 -0.06 -28.35 16 15 N -0.72 -22.70 5.45 -466.16 -2.54 -25.24 16 16 C 0.12 2.94 6.06 86.38 0.52 3.47 16 17 C 0.05 0.83 4.88 71.98 0.35 1.18 16 18 O -0.32 -6.99 10.10 -92.63 -0.94 -7.92 16 19 C 0.07 1.40 6.71 22.60 0.15 1.55 16 20 C -0.12 -2.23 10.13 22.56 0.23 -2.01 16 21 C -0.12 -1.72 10.11 22.35 0.23 -1.49 16 22 C 0.05 0.76 11.18 84.70 0.95 1.71 16 23 N -0.48 -9.90 10.35 -195.44 -2.02 -11.92 16 24 C 0.00 0.10 10.22 84.80 0.87 0.96 16 25 C -0.05 -2.34 9.47 22.25 0.21 -2.13 16 26 C -0.20 -9.83 8.64 22.47 0.19 -9.64 16 27 H 0.30 12.57 8.29 -92.71 -0.77 11.81 16 28 H 0.10 4.88 8.06 -2.91 -0.02 4.86 16 29 H 0.10 4.84 7.63 -2.91 -0.02 4.82 16 30 H 0.41 11.63 6.47 -92.71 -0.60 11.03 16 31 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.09 1.26 7.68 -2.38 -0.02 1.24 16 34 H 0.11 1.24 7.68 -2.39 -0.02 1.22 16 35 H 0.15 2.42 8.06 -2.91 -0.02 2.39 16 36 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 37 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 38 H 0.17 2.55 6.32 -2.91 -0.02 2.53 16 39 H 0.12 4.36 6.37 -2.91 -0.02 4.34 16 40 H 0.11 5.67 6.16 -2.91 -0.02 5.65 16 Total: -1.00 -66.16 347.18 2.41 -63.76 By element: Atomic # 1 Polarization: 35.86 SS G_CDS: 0.48 Total: 36.34 kcal Atomic # 6 Polarization: -30.78 SS G_CDS: 5.22 Total: -25.56 kcal Atomic # 7 Polarization: -70.67 SS G_CDS: -4.33 Total: -74.99 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -1.00 Total: -36.28 kcal Atomic # 14 Polarization: 34.70 SS G_CDS: 2.03 Total: 36.73 kcal Total: -66.16 2.41 -63.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759106008.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.741 kcal (2) G-P(sol) polarization free energy of solvation -66.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds