Wall clock time and date at job start Fri Apr 10 2020 22:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30641 * 1 3 3 Si 1.86802 * 120.00008 * 2 1 4 4 H 1.48502 * 109.47363 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47003 * 300.00348 * 3 2 1 6 6 H 1.48497 * 109.47385 * 60.00208 * 3 2 1 7 7 C 1.40230 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99894 * 197.87659 * 7 2 1 9 9 C 1.41105 * 120.00193 * 17.87241 * 7 2 1 10 10 C 1.40888 * 120.10299 * 204.63280 * 9 7 2 11 11 C 1.36313 * 119.88606 * 180.02562 * 10 9 7 12 12 C 1.40014 * 120.11532 * 0.02562 * 11 10 9 13 13 C 1.47638 * 119.89950 * 179.97438 * 12 11 10 14 14 O 1.21586 * 120.00148 * 0.02562 * 13 12 11 15 15 N 1.34785 * 119.99752 * 180.27106 * 13 12 11 16 16 C 1.46497 * 119.99417 * 179.72414 * 15 13 12 17 17 C 1.53009 * 109.46698 * 180.02562 * 16 15 13 18 18 H 1.09003 * 109.46929 * 60.00124 * 17 16 15 19 19 O 1.42898 * 109.46908 * 300.00327 * 17 16 15 20 20 C 1.50696 * 109.46939 * 180.02562 * 17 16 15 21 21 C 1.38674 * 120.42010 * 264.99683 * 20 17 16 22 22 C 1.38623 * 118.41994 * 180.02562 * 21 20 17 23 23 C 1.38221 * 119.16662 * 0.02562 * 22 21 20 24 24 N 1.31860 * 120.76056 * 359.97438 * 23 22 21 25 25 C 1.31888 * 121.72698 * 359.70335 * 24 23 22 26 26 C 1.40016 * 120.20058 * 0.25173 * 12 11 10 27 27 C 1.36319 * 120.11088 * 359.48456 * 26 12 11 28 28 H 0.96993 * 120.00291 * 359.97438 * 1 2 3 29 29 H 1.07990 * 120.05477 * 359.97438 * 10 9 7 30 30 H 1.08005 * 119.94401 * 179.97438 * 11 10 9 31 31 H 0.96998 * 120.00180 * 359.73305 * 15 13 12 32 32 H 1.08993 * 109.47723 * 299.99862 * 16 15 13 33 33 H 1.08997 * 109.47189 * 60.01062 * 16 15 13 34 34 H 0.96703 * 114.00574 * 299.99686 * 19 17 16 35 35 H 1.07997 * 120.78489 * 359.97438 * 21 20 17 36 36 H 1.08008 * 120.41436 * 180.02562 * 22 21 20 37 37 H 1.08002 * 119.62074 * 179.97438 * 23 22 21 38 38 H 1.07991 * 119.61664 * 180.31105 * 25 24 23 39 39 H 1.08004 * 119.94056 * 179.74384 * 26 12 11 40 40 H 1.07994 * 120.05462 * 180.25544 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 3.7005 1.3465 -0.0006 5 1 1.8816 2.3965 -1.2125 6 1 1.8818 2.3965 1.2125 7 6 2.0076 -1.2144 -0.0005 8 1 3.0485 -1.2371 0.2866 9 6 1.3532 -2.4068 -0.3761 10 6 1.8269 -3.6495 0.0891 11 6 1.1916 -4.7987 -0.2769 12 6 0.0706 -4.7457 -1.1141 13 6 -0.6134 -5.9933 -1.5079 14 8 -0.2034 -7.0647 -1.1051 15 7 -1.6895 -5.9450 -2.3182 16 6 -2.3645 -7.1835 -2.7138 17 6 -3.5452 -6.8510 -3.6284 18 1 -3.1822 -6.3351 -4.5174 19 8 -4.4653 -6.0087 -2.9313 20 6 -4.2400 -8.1249 -4.0350 21 6 -3.9196 -8.7485 -5.2314 22 6 -4.5848 -9.9182 -5.5647 23 6 -5.5390 -10.4202 -4.6998 24 7 -5.8180 -9.8003 -3.5700 25 6 -5.2009 -8.6893 -3.2177 26 6 -0.4003 -3.5134 -1.5835 27 6 0.2251 -2.3584 -1.2186 28 1 -0.4850 0.8400 0.0004 29 1 2.6922 -3.6915 0.7338 30 1 1.5542 -5.7518 0.0788 31 1 -2.0168 -5.0903 -2.6393 32 1 -1.6629 -7.8258 -3.2460 33 1 -2.7273 -7.6996 -1.8249 34 1 -4.8296 -6.4044 -2.1276 35 1 -3.1702 -8.3323 -5.8883 36 1 -4.3602 -10.4307 -6.4885 37 1 -6.0620 -11.3308 -4.9524 38 1 -5.4528 -8.2125 -2.2821 39 1 -1.2629 -3.4778 -2.2324 40 1 -0.1413 -1.4082 -1.5779 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759650858.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:43:01 Heat of formation + Delta-G solvation = -60.693058 kcal Electronic energy + Delta-G solvation = -23932.174132 eV Core-core repulsion = 20289.131089 eV Total energy + Delta-G solvation = -3643.043044 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.44812 -40.71013 -39.04976 -38.33996 -35.66836 -35.29327 -33.79338 -32.52962 -32.03633 -31.29483 -29.49321 -27.55181 -25.20617 -24.56670 -23.49198 -22.84022 -22.51441 -21.23745 -19.36743 -18.84721 -18.51801 -17.66099 -17.53615 -17.23357 -16.57314 -16.32202 -15.94246 -15.71372 -15.38228 -15.22410 -15.03784 -14.91424 -14.56749 -14.41866 -14.01368 -13.88054 -13.71592 -13.53092 -13.19833 -13.06232 -12.85194 -12.62058 -12.52156 -12.36945 -11.75941 -11.46896 -11.36493 -11.12037 -10.84330 -10.71829 -10.41045 -10.11677 -10.00671 -9.56844 -9.40356 -8.79221 -6.47894 0.05954 0.29304 0.44055 1.15664 1.38979 1.42586 1.55950 2.11797 2.18091 2.29215 2.78454 2.79763 3.33250 3.40663 3.69421 3.70292 3.75602 3.85274 4.02851 4.06658 4.23294 4.28122 4.33042 4.44953 4.56647 4.66395 4.74463 4.84089 4.93247 5.03631 5.14735 5.16436 5.25012 5.30489 5.50119 5.59585 5.70918 5.82671 5.94763 6.00156 6.23197 6.54587 6.57973 6.69843 6.77614 6.89410 6.96690 7.42332 8.16153 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.029304 B = 0.002364 C = 0.002260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.284886 B =11839.223182 C =12386.466323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.037 3.963 3 Si 0.988 3.012 4 H -0.257 1.257 5 H -0.260 1.260 6 H -0.264 1.264 7 C -0.472 4.472 8 H 0.085 0.915 9 C 0.101 3.899 10 C -0.253 4.253 11 C -0.033 4.033 12 C -0.293 4.293 13 C 0.572 3.428 14 O -0.607 6.607 15 N -0.718 5.718 16 C 0.098 3.902 17 C 0.159 3.841 18 H 0.129 0.871 19 O -0.558 6.558 20 C -0.173 4.173 21 C -0.069 4.069 22 C -0.167 4.167 23 C 0.086 3.914 24 N -0.513 5.513 25 C 0.094 3.906 26 C -0.052 4.052 27 C -0.199 4.199 28 H 0.297 0.703 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.410 0.590 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.388 0.612 35 H 0.159 0.841 36 H 0.167 0.833 37 H 0.179 0.821 38 H 0.163 0.837 39 H 0.123 0.877 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.031 -9.772 -11.619 18.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.182 4.182 3 Si 0.807 3.193 4 H -0.181 1.181 5 H -0.184 1.184 6 H -0.189 1.189 7 C -0.499 4.499 8 H 0.103 0.897 9 C 0.097 3.903 10 C -0.273 4.273 11 C -0.052 4.052 12 C -0.298 4.298 13 C 0.366 3.634 14 O -0.492 6.492 15 N -0.371 5.371 16 C -0.026 4.026 17 C 0.099 3.901 18 H 0.146 0.854 19 O -0.366 6.366 20 C -0.176 4.176 21 C -0.095 4.095 22 C -0.186 4.186 23 C -0.071 4.071 24 N -0.221 5.221 25 C -0.062 4.062 26 C -0.071 4.071 27 C -0.218 4.218 28 H 0.108 0.892 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.248 0.752 32 H 0.089 0.911 33 H 0.079 0.921 34 H 0.239 0.761 35 H 0.176 0.824 36 H 0.185 0.815 37 H 0.196 0.804 38 H 0.180 0.820 39 H 0.141 0.859 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.512 -10.337 -11.268 18.556 hybrid contribution 0.751 0.839 0.161 1.138 sum -9.761 -9.497 -11.106 17.574 Atomic orbital electron populations 1.69761 1.09231 1.31600 1.31488 1.26936 0.95555 1.04854 0.90852 0.85067 0.79442 0.75501 0.79255 1.18060 1.18410 1.18876 1.20133 0.98738 0.92212 1.38835 0.89698 1.18151 0.91279 0.92890 0.87935 1.20851 1.05211 0.92759 1.08471 1.20513 0.93546 0.97017 0.94164 1.19159 1.04381 0.92185 1.14065 1.18391 0.79502 0.88463 0.77088 1.90620 1.67729 1.32404 1.58431 1.45607 1.30331 1.10417 1.50750 1.21999 0.94717 0.86992 0.98865 1.20831 0.86238 0.88006 0.95029 0.85391 1.86633 1.61912 1.44897 1.43133 1.21392 0.99956 0.98918 0.97360 1.21851 0.97957 0.94606 0.95094 1.22504 0.97054 0.96803 1.02247 1.23341 0.95162 0.99394 0.89189 1.67722 1.26576 1.09115 1.18720 1.22728 0.92338 0.91706 0.99445 1.20727 0.97668 0.91478 0.97199 1.21016 1.00539 0.97457 1.02775 0.89163 0.87824 0.87955 0.75198 0.91145 0.92066 0.76136 0.82356 0.81514 0.80403 0.82020 0.85888 0.86838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.99 10.96 21.87 0.24 -37.75 16 2 C 0.04 1.72 5.14 85.35 0.44 2.15 16 3 Si 0.99 34.62 29.60 68.60 2.03 36.65 16 4 H -0.26 -8.92 7.11 99.48 0.71 -8.22 16 5 H -0.26 -8.68 7.11 99.48 0.71 -7.97 16 6 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 7 C -0.47 -23.78 9.04 23.46 0.21 -23.57 16 8 H 0.08 4.11 7.91 -2.91 -0.02 4.09 16 9 C 0.10 5.22 5.57 -21.28 -0.12 5.10 16 10 C -0.25 -12.57 9.73 22.47 0.22 -12.36 16 11 C -0.03 -1.59 9.52 22.25 0.21 -1.38 16 12 C -0.29 -13.27 5.89 -19.93 -0.12 -13.39 16 13 C 0.57 23.57 7.76 86.72 0.67 24.25 16 14 O -0.61 -28.52 16.32 -3.99 -0.07 -28.58 16 15 N -0.72 -22.00 5.40 -466.15 -2.52 -24.51 16 16 C 0.10 2.38 5.32 86.38 0.46 2.84 16 17 C 0.16 2.83 3.32 29.85 0.10 2.93 16 18 H 0.13 2.00 8.06 -2.39 -0.02 1.98 16 19 O -0.56 -10.66 12.89 -148.98 -1.92 -12.58 16 20 C -0.17 -2.95 5.02 -19.77 -0.10 -3.04 16 21 C -0.07 -0.96 9.84 22.47 0.22 -0.74 16 22 C -0.17 -2.01 10.11 22.36 0.23 -1.79 16 23 C 0.09 1.29 11.18 84.68 0.95 2.24 16 24 N -0.51 -10.49 10.36 -195.84 -2.03 -12.51 16 25 C 0.09 1.76 10.49 84.67 0.89 2.65 16 26 C -0.05 -2.25 9.47 22.25 0.21 -2.04 16 27 C -0.20 -9.77 8.64 22.47 0.19 -9.58 16 28 H 0.30 12.52 8.29 -92.71 -0.77 11.75 16 29 H 0.10 4.84 8.06 -2.92 -0.02 4.81 16 30 H 0.10 4.77 7.63 -2.91 -0.02 4.75 16 31 H 0.41 11.33 6.35 -92.71 -0.59 10.75 16 32 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.39 5.46 7.42 -74.06 -0.55 4.91 16 35 H 0.16 1.46 8.06 -2.91 -0.02 1.43 16 36 H 0.17 0.94 8.06 -2.91 -0.02 0.91 16 37 H 0.18 1.65 8.06 -2.91 -0.02 1.63 16 38 H 0.16 2.45 6.64 -2.92 -0.02 2.43 16 39 H 0.12 4.39 6.37 -2.91 -0.02 4.37 16 40 H 0.11 5.67 6.16 -2.91 -0.02 5.65 16 Total: -1.00 -66.95 346.24 0.37 -66.59 By element: Atomic # 1 Polarization: 38.44 SS G_CDS: -0.04 Total: 38.40 kcal Atomic # 6 Polarization: -30.37 SS G_CDS: 4.67 Total: -25.70 kcal Atomic # 7 Polarization: -70.47 SS G_CDS: -4.31 Total: -74.78 kcal Atomic # 8 Polarization: -39.18 SS G_CDS: -1.98 Total: -41.16 kcal Atomic # 14 Polarization: 34.62 SS G_CDS: 2.03 Total: 36.65 kcal Total: -66.95 0.37 -66.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759650858.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.895 kcal (2) G-P(sol) polarization free energy of solvation -66.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds