Wall clock time and date at job start Fri Apr 10 2020 22:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30648 * 1 3 3 Si 1.86796 * 120.00168 * 2 1 4 4 H 1.48498 * 109.47513 * 270.00544 * 3 2 1 5 5 H 1.48507 * 109.46819 * 30.00424 * 3 2 1 6 6 H 1.48493 * 109.47229 * 149.99928 * 3 2 1 7 7 C 1.40229 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99855 * 197.86837 * 7 2 1 9 9 C 1.41104 * 120.00062 * 17.86155 * 7 2 1 10 10 C 1.40893 * 120.10361 * 204.63578 * 9 7 2 11 11 C 1.36320 * 119.89200 * 180.02562 * 10 9 7 12 12 C 1.40009 * 120.10659 * 0.02562 * 11 10 9 13 13 C 1.47645 * 119.89538 * 179.97438 * 12 11 10 14 14 O 1.21589 * 119.99748 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00390 * 179.97438 * 13 12 11 16 16 C 1.46493 * 120.00412 * 180.02562 * 15 13 12 17 17 C 1.52997 * 109.47198 * 180.02562 * 16 15 13 18 18 H 1.09005 * 109.47011 * 304.99123 * 17 16 15 19 19 O 1.42898 * 109.47669 * 64.99471 * 17 16 15 20 20 C 1.50703 * 109.47033 * 185.00248 * 17 16 15 21 21 C 1.38674 * 120.42333 * 99.71933 * 20 17 16 22 22 C 1.38623 * 118.41771 * 179.78473 * 21 20 17 23 23 C 1.38227 * 119.16457 * 0.50809 * 22 21 20 24 24 N 1.31852 * 120.76068 * 359.72530 * 23 22 21 25 25 C 1.31885 * 121.72886 * 0.02562 * 24 23 22 26 26 C 1.40017 * 120.20966 * 0.24886 * 12 11 10 27 27 C 1.36314 * 120.10483 * 359.48527 * 26 12 11 28 28 H 0.97003 * 119.99882 * 359.97438 * 1 2 3 29 29 H 1.07998 * 120.05335 * 359.97438 * 10 9 7 30 30 H 1.07997 * 119.94690 * 179.97438 * 11 10 9 31 31 H 0.97005 * 119.99084 * 0.02562 * 15 13 12 32 32 H 1.08998 * 109.47220 * 60.00066 * 16 15 13 33 33 H 1.09004 * 109.46617 * 300.00066 * 16 15 13 34 34 H 0.96703 * 113.99766 * 60.00614 * 19 17 16 35 35 H 1.07994 * 120.78818 * 0.02562 * 21 20 17 36 36 H 1.07998 * 120.41585 * 180.21761 * 22 21 20 37 37 H 1.07999 * 119.61771 * 179.75060 * 23 22 21 38 38 H 1.08002 * 119.61639 * 179.97438 * 25 24 23 39 39 H 1.08006 * 119.94350 * 179.74905 * 26 12 11 40 40 H 1.07997 * 120.05064 * 180.22979 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.4879 2.0465 -1.4000 5 1 1.4379 2.6526 0.7002 6 1 3.5380 1.4401 0.7000 7 6 2.0076 -1.2144 -0.0005 8 1 3.0485 -1.2371 0.2864 9 6 1.3531 -2.4068 -0.3759 10 6 1.8267 -3.6495 0.0894 11 6 1.1914 -4.7988 -0.2764 12 6 0.0703 -4.7457 -1.1133 13 6 -0.6139 -5.9935 -1.5070 14 8 -0.2033 -7.0649 -1.1047 15 7 -1.6936 -5.9449 -2.3122 16 6 -2.3728 -7.1828 -2.7023 17 6 -3.5571 -6.8499 -3.6120 18 1 -4.2102 -6.1352 -3.1112 19 8 -3.0760 -6.2820 -4.8318 20 6 -4.3282 -8.1091 -3.9137 21 6 -5.4922 -8.4030 -3.2196 22 6 -6.1709 -9.5701 -3.5340 23 6 -5.6628 -10.4016 -4.5144 24 7 -4.5501 -10.0924 -5.1507 25 6 -3.8810 -8.9883 -4.8814 26 6 -0.4007 -3.5136 -1.5829 27 6 0.2248 -2.3586 -1.2182 28 1 -0.4850 0.8401 0.0004 29 1 2.6922 -3.6915 0.7340 30 1 1.5539 -5.7519 0.0794 31 1 -2.0209 -5.0901 -2.6334 32 1 -2.7322 -7.6966 -1.8107 33 1 -1.6747 -7.8274 -3.2365 34 1 -2.4874 -6.8643 -5.3315 35 1 -5.8632 -7.7365 -2.4551 36 1 -7.0826 -9.8288 -3.0161 37 1 -6.1835 -11.3147 -4.7623 38 1 -2.9729 -8.7689 -5.4233 39 1 -1.2634 -3.4780 -2.2316 40 1 -0.1415 -1.4084 -1.5779 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759650863.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:43:04 Heat of formation + Delta-G solvation = -40.252323 kcal Electronic energy + Delta-G solvation = -23917.931196 eV Core-core repulsion = 20275.774529 eV Total energy + Delta-G solvation = -3642.156667 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.72671 -39.17875 -37.73231 -36.95876 -33.97889 -33.88285 -33.04388 -31.82038 -30.37515 -29.46080 -28.33017 -25.92781 -24.21884 -23.89691 -21.99661 -21.70848 -20.89886 -19.64034 -18.00073 -17.54523 -17.21444 -16.93203 -16.62421 -15.60573 -15.32362 -15.07919 -15.05762 -14.42097 -14.03251 -13.94682 -13.88283 -13.68825 -13.42080 -13.17815 -12.75668 -12.61766 -12.22014 -12.12809 -11.93210 -11.72411 -11.37233 -11.29876 -10.97223 -10.68163 -10.61925 -10.13841 -10.05799 -9.77709 -9.57210 -9.39468 -9.35700 -8.99847 -8.68441 -7.73421 -7.56082 -7.05183 -4.61852 0.70153 0.91678 2.20998 2.90776 2.95035 2.97346 3.02637 3.37585 3.62797 3.72832 3.83720 4.06943 4.11169 4.43788 4.45762 4.54348 4.55260 4.65179 4.76278 4.98012 5.17692 5.34927 5.53964 5.59608 5.62545 5.74442 5.93545 6.03701 6.08118 6.29625 6.30348 6.75648 6.81403 6.84999 7.02863 7.12030 7.27017 7.42221 7.60473 7.63434 7.77515 7.84817 8.05674 8.19874 8.38655 8.61669 8.73912 9.03009 9.86836 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.028868 B = 0.002358 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.683441 B =11869.371108 C =12374.917837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.074 3.926 3 Si 0.914 3.086 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.442 4.442 8 H 0.085 0.915 9 C 0.128 3.872 10 C -0.239 4.239 11 C -0.022 4.022 12 C -0.285 4.285 13 C 0.572 3.428 14 O -0.577 6.577 15 N -0.737 5.737 16 C 0.099 3.901 17 C 0.142 3.858 18 H 0.117 0.883 19 O -0.547 6.547 20 C -0.164 4.164 21 C -0.062 4.062 22 C -0.170 4.170 23 C 0.097 3.903 24 N -0.482 5.482 25 C 0.110 3.890 26 C -0.061 4.061 27 C -0.178 4.178 28 H 0.287 0.713 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.402 0.598 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.377 0.623 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.156 0.844 38 H 0.154 0.846 39 H 0.090 0.910 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.377 -9.563 -7.362 16.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.148 4.148 3 Si 0.738 3.262 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.469 4.469 8 H 0.103 0.897 9 C 0.125 3.875 10 C -0.259 4.259 11 C -0.041 4.041 12 C -0.289 4.289 13 C 0.367 3.633 14 O -0.459 6.459 15 N -0.391 5.391 16 C -0.026 4.026 17 C 0.082 3.918 18 H 0.135 0.865 19 O -0.353 6.353 20 C -0.167 4.167 21 C -0.088 4.088 22 C -0.190 4.190 23 C -0.060 4.060 24 N -0.190 5.190 25 C -0.047 4.047 26 C -0.081 4.081 27 C -0.198 4.198 28 H 0.098 0.902 29 H 0.116 0.884 30 H 0.119 0.881 31 H 0.238 0.762 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.225 0.775 35 H 0.156 0.844 36 H 0.155 0.845 37 H 0.174 0.826 38 H 0.171 0.829 39 H 0.108 0.892 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.354 -10.237 -7.515 17.034 hybrid contribution -0.024 1.203 0.455 1.286 sum -11.378 -9.034 -7.060 16.153 Atomic orbital electron populations 1.69745 1.07918 1.30075 1.31684 1.26109 0.94824 1.01917 0.91899 0.86197 0.80569 0.79777 0.79668 1.18904 1.20020 1.18278 1.19862 0.98443 0.91185 1.37440 0.89677 1.17799 0.90384 0.92180 0.87134 1.20717 1.04615 0.92639 1.07895 1.20359 0.92916 0.97138 0.93692 1.18863 1.04584 0.90949 1.14545 1.18617 0.78551 0.89691 0.76451 1.90638 1.66540 1.31731 1.57010 1.45793 1.31902 1.08692 1.52759 1.21818 0.93509 0.88596 0.98682 1.20999 0.93590 0.91662 0.85543 0.86544 1.86665 1.68111 1.45747 1.34728 1.21453 0.97519 0.98781 0.98954 1.21505 0.93245 0.96551 0.97507 1.22170 1.01597 0.95644 0.99601 1.22835 0.92102 0.98927 0.92129 1.67707 1.07464 1.17719 1.26114 1.22503 0.98506 0.89181 0.94505 1.20486 0.97400 0.92548 0.97638 1.20978 0.99931 0.96940 1.01906 0.90210 0.88378 0.88142 0.76201 0.91063 0.91533 0.77457 0.84385 0.84478 0.82624 0.82906 0.89226 0.86179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.34 10.96 55.56 0.61 -17.73 16 2 C 0.07 1.71 5.14 -17.31 -0.09 1.62 16 3 Si 0.91 17.17 29.60 -169.99 -5.03 12.14 16 4 H -0.26 -4.92 7.11 56.52 0.40 -4.51 16 5 H -0.28 -5.06 7.11 56.52 0.40 -4.65 16 6 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 7 C -0.44 -10.92 9.04 -37.75 -0.34 -11.26 16 8 H 0.09 2.01 7.91 -52.49 -0.42 1.60 16 9 C 0.13 3.25 5.57 -106.80 -0.60 2.66 16 10 C -0.24 -5.77 9.73 -39.27 -0.38 -6.15 16 11 C -0.02 -0.51 9.52 -39.61 -0.38 -0.89 16 12 C -0.28 -6.46 5.89 -104.73 -0.62 -7.08 16 13 C 0.57 11.98 7.76 -12.42 -0.10 11.89 16 14 O -0.58 -13.61 16.32 5.29 0.09 -13.52 16 15 N -0.74 -11.87 5.45 -61.32 -0.33 -12.21 16 16 C 0.10 1.28 5.29 -4.05 -0.02 1.25 16 17 C 0.14 1.41 3.26 -27.88 -0.09 1.32 16 18 H 0.12 1.10 8.03 -51.93 -0.42 0.68 16 19 O -0.55 -5.64 13.14 -35.23 -0.46 -6.10 16 20 C -0.16 -1.54 4.98 -104.48 -0.52 -2.06 16 21 C -0.06 -0.51 9.82 -39.28 -0.39 -0.90 16 22 C -0.17 -1.27 10.11 -39.44 -0.40 -1.66 16 23 C 0.10 0.82 11.18 -17.55 -0.20 0.62 16 24 N -0.48 -5.13 10.36 -13.25 -0.14 -5.27 16 25 C 0.11 1.07 10.49 -17.55 -0.18 0.89 16 26 C -0.06 -1.35 9.47 -39.61 -0.38 -1.73 16 27 C -0.18 -4.34 8.63 -39.27 -0.34 -4.68 16 28 H 0.29 6.12 8.29 -40.82 -0.34 5.78 16 29 H 0.10 2.21 8.06 -52.49 -0.42 1.78 16 30 H 0.10 2.29 7.63 -52.49 -0.40 1.89 16 31 H 0.40 5.98 6.47 -40.82 -0.26 5.72 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.38 2.79 7.53 45.56 0.34 3.13 16 35 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 37 H 0.16 0.89 8.06 -52.49 -0.42 0.46 16 38 H 0.15 1.17 6.80 -52.49 -0.36 0.81 16 39 H 0.09 1.68 6.37 -52.48 -0.33 1.35 16 40 H 0.12 2.96 6.16 -52.49 -0.32 2.64 16 LS Contribution 346.78 15.07 5.23 5.23 Total: -1.00 -30.82 346.78 -8.89 -39.71 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -3.84 Total: 13.92 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: -5.01 Total: -16.16 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.14 Total: -35.21 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -0.38 Total: -19.63 kcal Atomic # 14 Polarization: 17.17 SS G_CDS: -5.03 Total: 12.14 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.82 -8.89 -39.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759650863.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.540 kcal (2) G-P(sol) polarization free energy of solvation -30.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds