Wall clock time and date at job start Fri Apr 10 2020 22:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38389 * 119.99882 * 2 1 4 4 N 1.32128 * 119.99858 * 179.97438 * 3 2 1 5 5 C 1.32152 * 119.99814 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99790 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47118 * 304.99801 * 6 5 4 8 8 O 1.45199 * 109.47330 * 180.02562 * 7 6 5 9 9 C 1.34704 * 117.00141 * 180.02562 * 8 7 6 10 10 O 1.21469 * 119.99716 * 359.97438 * 9 8 7 11 11 C 1.47761 * 120.00154 * 180.02562 * 9 8 7 12 12 C 1.39976 * 120.03029 * 359.94877 * 11 9 8 13 13 C 1.38308 * 120.35430 * 180.02562 * 12 11 9 14 14 C 1.37769 * 120.41881 * 0.04891 * 13 12 11 15 15 C 1.40748 * 120.04688 * 359.97417 * 14 13 12 16 16 C 1.41444 * 120.17042 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00355 * 335.19330 * 16 15 14 18 18 C 1.39938 * 119.99878 * 155.20169 * 16 15 14 19 19 N 1.30832 * 120.00122 * 342.30037 * 18 16 15 20 20 Si 1.86801 * 120.00083 * 162.29951 * 18 16 15 21 21 H 1.48498 * 109.46859 * 59.99920 * 20 18 16 22 22 H 1.48499 * 109.47243 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47241 * 299.99693 * 20 18 16 24 24 C 1.39051 * 120.03437 * 179.97438 * 11 9 8 25 25 C 1.38346 * 120.00071 * 0.25062 * 5 4 3 26 26 N 1.32117 * 120.00168 * 179.97438 * 2 1 3 27 27 H 1.08996 * 109.47731 * 89.99738 * 1 2 3 28 28 H 1.09005 * 109.47105 * 209.99664 * 1 2 3 29 29 H 1.09006 * 109.47235 * 329.99665 * 1 2 3 30 30 H 1.08006 * 120.00384 * 0.02562 * 3 2 1 31 31 H 1.09002 * 109.46791 * 185.00223 * 6 5 4 32 32 H 1.08999 * 109.47018 * 65.00263 * 6 5 4 33 33 H 1.08996 * 109.46938 * 59.99808 * 7 6 5 34 34 H 1.09003 * 109.47198 * 300.00488 * 7 6 5 35 35 H 1.07999 * 119.81856 * 0.04887 * 12 11 9 36 36 H 1.08000 * 119.79295 * 180.02562 * 13 12 11 37 37 H 1.07996 * 119.97345 * 179.97438 * 14 13 12 38 38 H 0.96997 * 120.00049 * 180.02562 * 19 18 16 39 39 H 1.08003 * 120.20124 * 0.24938 * 24 11 9 40 40 H 1.08000 * 119.99373 * 179.71733 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.1985 0.0000 4 7 3.5202 1.1985 0.0005 5 6 4.1809 0.0540 0.0005 6 6 5.6879 0.0540 0.0005 7 6 6.1979 0.8813 -1.1811 8 8 7.6499 0.8809 -1.1815 9 6 8.2614 1.5696 -2.1644 10 8 7.5998 2.1542 -2.9987 11 6 9.7370 1.6131 -2.2285 12 6 10.5001 0.9396 -1.2675 13 6 11.8816 0.9762 -1.3207 14 6 12.5229 1.6764 -2.3190 15 6 11.7726 2.3602 -3.2940 16 6 12.4283 3.0793 -4.3204 17 1 13.4311 3.4491 -4.1650 18 6 11.7776 3.3119 -5.5373 19 7 10.7338 2.5960 -5.8682 20 14 12.3993 4.6446 -6.6891 21 1 13.7996 4.3451 -7.0825 22 1 11.5430 4.6902 -7.9014 23 1 12.3493 5.9585 -5.9988 24 6 10.3690 2.3234 -3.2432 25 6 3.4892 -1.1441 -0.0053 26 7 2.1676 -1.1441 0.0005 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 1.6589 2.1339 0.0004 31 1 6.0512 -0.9698 -0.0891 32 1 6.0512 0.4883 0.9319 33 1 5.8346 1.9050 -1.0916 34 1 5.8345 0.4470 -2.1125 35 1 10.0073 0.3882 -0.4804 36 1 12.4615 0.4530 -0.5748 37 1 13.6020 1.7005 -2.3535 38 1 10.2830 2.7569 -6.7119 39 1 9.7845 2.8483 -3.9843 40 1 4.0293 -2.0793 -0.0099 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760376812.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:43:06 Heat of formation + Delta-G solvation = -33.481061 kcal Electronic energy + Delta-G solvation = -23681.319012 eV Core-core repulsion = 20039.455969 eV Total energy + Delta-G solvation = -3641.863043 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.47574 -39.74040 -37.43541 -36.11797 -35.15996 -33.78467 -33.65355 -31.62958 -30.27828 -29.51674 -27.60766 -25.40982 -25.05985 -24.20376 -22.75756 -21.61714 -20.99331 -19.82706 -18.08313 -17.88146 -16.69594 -16.37755 -16.09653 -15.93915 -15.82494 -15.41500 -14.95697 -14.65246 -13.92951 -13.73410 -13.51080 -13.31519 -13.17036 -12.95052 -12.74173 -12.61239 -12.50797 -11.93244 -11.83710 -11.71893 -11.52798 -11.34214 -11.19123 -11.11760 -10.77906 -10.54424 -10.20968 -10.19401 -9.74647 -9.54498 -9.31846 -9.31692 -9.24651 -7.75599 -7.57103 -6.83994 -4.45099 0.42444 0.83094 1.97500 2.77748 3.05558 3.06547 3.07566 3.13897 3.38047 3.59691 3.70896 3.87021 3.89272 4.14494 4.42139 4.56802 4.67824 4.82603 4.98427 4.99463 5.13770 5.18669 5.28017 5.38849 5.51196 5.52817 5.63298 5.79402 5.90640 6.08223 6.12420 6.38935 6.62669 6.91526 6.93795 6.97885 6.99004 7.15729 7.29676 7.48345 7.66868 7.73945 7.89440 8.09049 8.42623 8.54991 8.75623 8.77550 10.11421 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.022420 B = 0.002414 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.566640 B =11593.995753 C =12555.833040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.070 3.930 3 C 0.057 3.943 4 N -0.430 5.430 5 C 0.079 3.921 6 C -0.064 4.064 7 C 0.075 3.925 8 O -0.357 6.357 9 C 0.513 3.487 10 O -0.517 6.517 11 C -0.114 4.114 12 C -0.194 4.194 13 C -0.104 4.104 14 C -0.202 4.202 15 C 0.095 3.905 16 C -0.460 4.460 17 H 0.082 0.918 18 C 0.073 3.927 19 N -0.787 5.787 20 Si 0.912 3.088 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.262 1.262 24 C -0.089 4.089 25 C 0.063 3.937 26 N -0.438 5.438 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.170 0.830 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.285 0.715 39 H 0.135 0.865 40 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.291 -4.845 9.977 18.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.070 4.070 3 C -0.103 4.103 4 N -0.144 5.144 5 C -0.061 4.061 6 C -0.103 4.103 7 C 0.000 4.000 8 O -0.274 6.274 9 C 0.360 3.640 10 O -0.406 6.406 11 C -0.116 4.116 12 C -0.214 4.214 13 C -0.122 4.122 14 C -0.222 4.222 15 C 0.093 3.907 16 C -0.489 4.489 17 H 0.100 0.900 18 C -0.146 4.146 19 N -0.411 5.411 20 Si 0.736 3.264 21 H -0.189 1.189 22 H -0.202 1.202 23 H -0.187 1.187 24 C -0.108 4.108 25 C -0.097 4.097 26 N -0.153 5.153 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.187 0.813 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.122 0.878 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.096 0.904 39 H 0.153 0.847 40 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -15.698 -4.723 9.534 18.963 hybrid contribution 0.053 0.532 -0.695 0.877 sum -15.645 -4.191 8.839 18.451 Atomic orbital electron populations 1.20682 0.87632 1.03919 1.03567 1.22360 0.98587 0.89764 0.96327 1.23656 0.90493 0.99313 0.96888 1.68283 1.08760 1.29390 1.07982 1.22041 0.97432 0.89866 0.96758 1.20371 0.87110 1.02651 1.00130 1.22706 0.78187 1.01302 0.97812 1.86538 1.21408 1.68430 1.51058 1.21861 0.89998 0.74668 0.77476 1.90769 1.67023 1.43328 1.39497 1.18829 0.86301 1.06010 1.00441 1.20561 0.93597 1.06477 1.00728 1.20513 0.93826 0.99776 0.98089 1.21185 0.98191 1.03206 0.99575 1.17539 0.91008 0.90202 0.91957 1.19538 1.01745 1.30624 0.97006 0.89954 1.25971 0.94161 0.95572 0.98902 1.69772 1.16761 1.32493 1.22117 0.86303 0.79596 0.81569 0.78944 1.18912 1.20240 1.18695 1.21648 0.94991 0.98304 0.95876 1.23649 0.90457 0.99241 0.96312 1.68317 1.08651 1.29364 1.09013 0.89918 0.90175 0.90160 0.81282 0.88475 0.88251 0.90464 0.91757 0.87817 0.88511 0.88336 0.90353 0.84745 0.81026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.56 10.19 36.01 0.37 -0.19 16 2 C 0.07 0.64 6.79 -82.41 -0.56 0.08 16 3 C 0.06 0.55 10.88 -17.37 -0.19 0.36 16 4 N -0.43 -5.21 10.06 -9.28 -0.09 -5.30 16 5 C 0.08 0.88 6.18 -82.41 -0.51 0.37 16 6 C -0.06 -0.71 6.01 -27.88 -0.17 -0.88 16 7 C 0.07 1.14 5.34 37.16 0.20 1.34 16 8 O -0.36 -6.66 9.46 -40.50 -0.38 -7.04 16 9 C 0.51 11.64 7.90 34.62 0.27 11.91 16 10 O -0.52 -12.88 16.12 -19.24 -0.31 -13.19 16 11 C -0.11 -2.76 5.87 -105.05 -0.62 -3.38 16 12 C -0.19 -4.24 9.62 -38.90 -0.37 -4.61 16 13 C -0.10 -2.22 10.01 -39.73 -0.40 -2.62 16 14 C -0.20 -4.74 9.78 -38.81 -0.38 -5.12 16 15 C 0.10 2.50 5.57 -106.88 -0.60 1.90 16 16 C -0.46 -11.94 9.05 -37.73 -0.34 -12.28 16 17 H 0.08 2.01 7.91 -52.49 -0.41 1.60 16 18 C 0.07 1.82 5.14 -17.34 -0.09 1.74 16 19 N -0.79 -20.67 10.97 55.55 0.61 -20.06 16 20 Si 0.91 18.61 29.59 -169.99 -5.03 13.58 16 21 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 22 H -0.28 -5.57 7.11 56.52 0.40 -5.16 16 23 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 24 C -0.09 -2.36 8.23 -38.43 -0.32 -2.67 16 25 C 0.06 0.63 10.85 -17.37 -0.19 0.44 16 26 N -0.44 -4.70 10.42 -9.29 -0.10 -4.80 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.28 8.09 -51.93 -0.42 -0.14 16 30 H 0.17 1.09 8.06 -52.48 -0.42 0.67 16 31 H 0.10 0.86 7.89 -51.93 -0.41 0.45 16 32 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.08 1.26 7.96 -51.93 -0.41 0.84 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.10 2.00 7.59 -52.49 -0.40 1.61 16 36 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.10 2.13 8.06 -52.49 -0.42 1.70 16 38 H 0.29 6.90 8.30 -40.82 -0.34 6.56 16 39 H 0.13 3.82 5.77 -52.48 -0.30 3.52 16 40 H 0.17 1.22 7.95 -52.49 -0.42 0.80 16 LS Contribution 353.51 15.07 5.33 5.33 Total: -1.00 -31.14 353.51 -8.73 -39.87 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -4.87 Total: 5.20 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -3.88 Total: -13.59 kcal Atomic # 7 Polarization: -30.58 SS G_CDS: 0.42 Total: -30.16 kcal Atomic # 8 Polarization: -19.54 SS G_CDS: -0.69 Total: -20.23 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.14 -8.73 -39.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760376812.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.388 kcal (2) G-P(sol) polarization free energy of solvation -31.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds