Wall clock time and date at job start Fri Apr 10 2020 22:43:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38389 * 119.99882 * 2 1 4 4 N 1.32128 * 119.99858 * 179.97438 * 3 2 1 5 5 C 1.32152 * 119.99814 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99790 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47118 * 304.99801 * 6 5 4 8 8 O 1.45199 * 109.47330 * 180.02562 * 7 6 5 9 9 C 1.34704 * 117.00141 * 180.02562 * 8 7 6 10 10 O 1.21469 * 119.99716 * 359.97438 * 9 8 7 11 11 C 1.47761 * 120.00154 * 180.02562 * 9 8 7 12 12 C 1.39976 * 120.03029 * 359.94877 * 11 9 8 13 13 C 1.38308 * 120.35430 * 180.02562 * 12 11 9 14 14 C 1.37769 * 120.41881 * 0.04891 * 13 12 11 15 15 C 1.40748 * 120.04688 * 359.97417 * 14 13 12 16 16 C 1.41444 * 120.17042 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00355 * 335.19330 * 16 15 14 18 18 C 1.39938 * 119.99878 * 155.20169 * 16 15 14 19 19 N 1.30832 * 120.00122 * 342.30037 * 18 16 15 20 20 Si 1.86801 * 120.00083 * 162.29951 * 18 16 15 21 21 H 1.48498 * 109.46859 * 59.99920 * 20 18 16 22 22 H 1.48499 * 109.47243 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47241 * 299.99693 * 20 18 16 24 24 C 1.39051 * 120.03437 * 179.97438 * 11 9 8 25 25 C 1.38346 * 120.00071 * 0.25062 * 5 4 3 26 26 N 1.32117 * 120.00168 * 179.97438 * 2 1 3 27 27 H 1.08996 * 109.47731 * 89.99738 * 1 2 3 28 28 H 1.09005 * 109.47105 * 209.99664 * 1 2 3 29 29 H 1.09006 * 109.47235 * 329.99665 * 1 2 3 30 30 H 1.08006 * 120.00384 * 0.02562 * 3 2 1 31 31 H 1.09002 * 109.46791 * 185.00223 * 6 5 4 32 32 H 1.08999 * 109.47018 * 65.00263 * 6 5 4 33 33 H 1.08996 * 109.46938 * 59.99808 * 7 6 5 34 34 H 1.09003 * 109.47198 * 300.00488 * 7 6 5 35 35 H 1.07999 * 119.81856 * 0.04887 * 12 11 9 36 36 H 1.08000 * 119.79295 * 180.02562 * 13 12 11 37 37 H 1.07996 * 119.97345 * 179.97438 * 14 13 12 38 38 H 0.96997 * 120.00049 * 180.02562 * 19 18 16 39 39 H 1.08003 * 120.20124 * 0.24938 * 24 11 9 40 40 H 1.08000 * 119.99373 * 179.71733 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.1985 0.0000 4 7 3.5202 1.1985 0.0005 5 6 4.1809 0.0540 0.0005 6 6 5.6879 0.0540 0.0005 7 6 6.1979 0.8813 -1.1811 8 8 7.6499 0.8809 -1.1815 9 6 8.2614 1.5696 -2.1644 10 8 7.5998 2.1542 -2.9987 11 6 9.7370 1.6131 -2.2285 12 6 10.5001 0.9396 -1.2675 13 6 11.8816 0.9762 -1.3207 14 6 12.5229 1.6764 -2.3190 15 6 11.7726 2.3602 -3.2940 16 6 12.4283 3.0793 -4.3204 17 1 13.4311 3.4491 -4.1650 18 6 11.7776 3.3119 -5.5373 19 7 10.7338 2.5960 -5.8682 20 14 12.3993 4.6446 -6.6891 21 1 13.7996 4.3451 -7.0825 22 1 11.5430 4.6902 -7.9014 23 1 12.3493 5.9585 -5.9988 24 6 10.3690 2.3234 -3.2432 25 6 3.4892 -1.1441 -0.0053 26 7 2.1676 -1.1441 0.0005 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8901 0.5138 29 1 -0.3634 0.8900 0.5139 30 1 1.6589 2.1339 0.0004 31 1 6.0512 -0.9698 -0.0891 32 1 6.0512 0.4883 0.9319 33 1 5.8346 1.9050 -1.0916 34 1 5.8345 0.4470 -2.1125 35 1 10.0073 0.3882 -0.4804 36 1 12.4615 0.4530 -0.5748 37 1 13.6020 1.7005 -2.3535 38 1 10.2830 2.7569 -6.7119 39 1 9.7845 2.8483 -3.9843 40 1 4.0293 -2.0793 -0.0099 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760376812.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:43:05 Heat of formation + Delta-G solvation = -50.814278 kcal Electronic energy + Delta-G solvation = -23682.070637 eV Core-core repulsion = 20039.455969 eV Total energy + Delta-G solvation = -3642.614668 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.23273 -41.44166 -39.21959 -37.67493 -36.11701 -35.61249 -34.47582 -32.64201 -31.94084 -31.35519 -28.48911 -27.26504 -25.81969 -25.45748 -24.10372 -22.85493 -22.53613 -21.56537 -19.67348 -18.88162 -18.24096 -17.78917 -17.51371 -17.14290 -16.74171 -16.63789 -16.47046 -16.15452 -15.26676 -15.16794 -15.08324 -14.47332 -14.29810 -14.26371 -13.77485 -13.58760 -13.52654 -13.21314 -13.07031 -12.92996 -12.82300 -12.79500 -12.61543 -12.55946 -12.23126 -12.15797 -12.06091 -11.62646 -11.55412 -11.32139 -11.08662 -10.11383 -10.04234 -9.61954 -9.44407 -8.69111 -6.40144 -0.31060 0.06653 0.12121 0.97218 1.36902 1.46745 1.50476 1.60354 1.78960 2.18513 2.59823 2.72012 3.00771 3.18309 3.39474 3.62606 3.66729 3.84106 3.86880 3.97258 4.15306 4.18847 4.34213 4.44639 4.49554 4.64246 4.73842 4.75445 4.79838 4.83599 4.90088 5.04866 5.09383 5.13429 5.26862 5.28809 5.41689 5.44668 5.81897 5.89374 6.00917 6.23135 6.25377 6.52630 6.74273 6.78608 6.85841 6.88875 8.28310 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.022420 B = 0.002414 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.566640 B =11593.995753 C =12555.833040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.070 3.930 3 C 0.048 3.952 4 N -0.462 5.462 5 C 0.061 3.939 6 C -0.051 4.051 7 C 0.073 3.927 8 O -0.344 6.344 9 C 0.516 3.484 10 O -0.549 6.549 11 C -0.129 4.129 12 C -0.178 4.178 13 C -0.099 4.099 14 C -0.202 4.202 15 C 0.064 3.936 16 C -0.494 4.494 17 H 0.088 0.912 18 C 0.029 3.971 19 N -0.828 5.828 20 Si 0.984 3.016 21 H -0.251 1.251 22 H -0.273 1.273 23 H -0.260 1.260 24 C -0.124 4.124 25 C 0.064 3.936 26 N -0.460 5.460 27 H 0.092 0.908 28 H 0.080 0.920 29 H 0.104 0.896 30 H 0.196 0.804 31 H 0.124 0.876 32 H 0.106 0.894 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.137 0.863 36 H 0.143 0.857 37 H 0.116 0.884 38 H 0.287 0.713 39 H 0.103 0.897 40 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.506 -5.834 11.672 20.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.070 4.070 3 C -0.113 4.113 4 N -0.177 5.177 5 C -0.079 4.079 6 C -0.089 4.089 7 C -0.001 4.001 8 O -0.260 6.260 9 C 0.364 3.636 10 O -0.442 6.442 11 C -0.130 4.130 12 C -0.197 4.197 13 C -0.117 4.117 14 C -0.222 4.222 15 C 0.062 3.938 16 C -0.523 4.523 17 H 0.106 0.894 18 C -0.186 4.186 19 N -0.453 5.453 20 Si 0.804 3.196 21 H -0.175 1.175 22 H -0.198 1.198 23 H -0.185 1.185 24 C -0.144 4.144 25 C -0.095 4.095 26 N -0.176 5.176 27 H 0.110 0.890 28 H 0.099 0.901 29 H 0.122 0.878 30 H 0.213 0.787 31 H 0.142 0.858 32 H 0.124 0.876 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.155 0.845 36 H 0.161 0.839 37 H 0.134 0.866 38 H 0.098 0.902 39 H 0.121 0.879 40 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -15.904 -5.741 11.266 20.317 hybrid contribution -0.008 0.738 -1.045 1.279 sum -15.912 -5.003 10.221 19.562 Atomic orbital electron populations 1.20806 0.85111 1.05177 1.04467 1.22937 1.00247 0.89252 0.94567 1.24130 0.89880 1.00738 0.96504 1.68237 1.10221 1.30336 1.08866 1.22048 0.97275 0.90271 0.98276 1.20336 0.87261 1.03224 0.98111 1.22963 0.75871 1.01508 0.99757 1.86498 1.23482 1.66968 1.49084 1.21730 0.89768 0.74458 0.77676 1.90748 1.67645 1.44814 1.40946 1.19075 0.87464 1.05965 1.00513 1.20995 0.94005 1.04695 1.00044 1.20988 0.93942 0.98694 0.98036 1.21519 0.99153 1.02399 0.99118 1.17906 0.91268 0.91338 0.93263 1.19839 1.02443 1.32190 0.97868 0.89354 1.26876 0.94082 0.97289 1.00346 1.69871 1.18347 1.34316 1.22794 0.85222 0.79484 0.78242 0.76648 1.17500 1.19803 1.18475 1.21454 0.95367 1.00571 0.97010 1.24022 0.90488 0.99796 0.95213 1.68409 1.09035 1.30166 1.09956 0.88993 0.90084 0.87755 0.78740 0.85813 0.87598 0.91944 0.92434 0.84495 0.83893 0.86596 0.90217 0.87892 0.78496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.87 10.19 71.24 0.73 -0.15 16 2 C 0.07 1.18 6.79 42.55 0.29 1.47 16 3 C 0.05 0.87 10.88 84.68 0.92 1.79 16 4 N -0.46 -10.94 10.06 -183.29 -1.84 -12.78 16 5 C 0.06 1.29 6.18 42.54 0.26 1.56 16 6 C -0.05 -1.05 6.01 29.85 0.18 -0.87 16 7 C 0.07 2.23 5.34 71.98 0.38 2.61 16 8 O -0.34 -12.57 9.46 -56.14 -0.53 -13.10 16 9 C 0.52 23.83 7.90 70.34 0.56 24.38 16 10 O -0.55 -28.64 16.12 19.94 0.32 -28.32 16 11 C -0.13 -6.28 5.87 -20.14 -0.12 -6.40 16 12 C -0.18 -7.36 9.62 22.71 0.22 -7.15 16 13 C -0.10 -3.92 10.01 22.18 0.22 -3.70 16 14 C -0.20 -9.28 9.78 22.77 0.22 -9.05 16 15 C 0.06 3.46 5.57 -21.32 -0.12 3.34 16 16 C -0.49 -26.41 9.05 23.47 0.21 -26.20 16 17 H 0.09 4.41 7.91 -2.91 -0.02 4.38 16 18 C 0.03 1.49 5.14 85.25 0.44 1.93 16 19 N -0.83 -45.68 10.97 21.83 0.24 -45.44 16 20 Si 0.98 39.06 29.59 68.60 2.03 41.09 16 21 H -0.25 -9.34 7.11 99.48 0.71 -8.64 16 22 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 23 H -0.26 -10.13 7.11 99.48 0.71 -9.43 16 24 C -0.12 -6.88 8.23 23.02 0.19 -6.69 16 25 C 0.06 1.18 10.85 84.67 0.92 2.10 16 26 N -0.46 -9.21 10.42 -183.29 -1.91 -11.12 16 27 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.10 0.42 8.09 -2.38 -0.02 0.40 16 30 H 0.20 2.19 8.06 -2.91 -0.02 2.17 16 31 H 0.12 1.86 7.89 -2.39 -0.02 1.84 16 32 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.06 2.08 7.96 -2.39 -0.02 2.06 16 34 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.14 4.73 7.59 -2.91 -0.02 4.71 16 36 H 0.14 4.39 8.06 -2.91 -0.02 4.36 16 37 H 0.12 4.81 8.06 -2.91 -0.02 4.79 16 38 H 0.29 14.64 8.30 -92.71 -0.77 13.87 16 39 H 0.10 6.29 5.77 -2.91 -0.02 6.27 16 40 H 0.20 2.34 7.95 -2.91 -0.02 2.31 16 Total: -1.00 -71.09 353.51 4.87 -66.22 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: 1.06 Total: 24.50 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: 5.50 Total: -21.04 kcal Atomic # 7 Polarization: -65.83 SS G_CDS: -3.51 Total: -69.35 kcal Atomic # 8 Polarization: -41.21 SS G_CDS: -0.21 Total: -41.42 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 2.03 Total: 41.09 kcal Total: -71.09 4.87 -66.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760376812.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.406 kcal (2) G-P(sol) polarization free energy of solvation -71.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds