Wall clock time and date at job start Fri Apr 10 2020 22:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38289 * 119.93090 * 2 1 4 4 C 1.38106 * 120.07580 * 179.74913 * 3 2 1 5 5 C 1.38895 * 119.92635 * 0.24780 * 4 3 2 6 6 N 1.39833 * 120.07215 * 180.02562 * 5 4 3 7 7 C 1.46509 * 119.99887 * 172.25517 * 6 5 4 8 8 C 1.50699 * 109.46777 * 75.58109 * 7 6 5 9 9 H 1.07997 * 120.00471 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99470 * 179.97438 * 8 7 6 11 11 N 1.31509 * 120.00006 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00043 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46731 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.46811 * 119.99850 * 12 10 8 15 15 H 1.48493 * 109.47444 * 240.00564 * 12 10 8 16 16 C 1.34775 * 120.00243 * 352.25441 * 6 5 4 17 17 O 1.21520 * 119.99870 * 3.35969 * 16 6 5 18 18 C 1.48125 * 120.00135 * 183.35788 * 16 6 5 19 19 C 1.39981 * 120.89360 * 26.14870 * 18 16 6 20 20 C 1.37969 * 119.13350 * 179.79726 * 19 18 16 21 21 N 1.31917 * 120.97391 * 0.49276 * 20 19 18 22 22 C 1.32177 * 121.97617 * 359.73230 * 21 20 19 23 23 O 1.35686 * 119.61726 * 180.02562 * 22 21 20 24 24 C 1.38880 * 120.75844 * 0.02807 * 22 21 20 25 25 C 1.38894 * 119.85368 * 0.02562 * 5 4 3 26 26 C 1.38106 * 119.93081 * 359.97438 * 25 5 4 27 27 H 1.08997 * 109.47282 * 89.99821 * 1 2 3 28 28 H 1.09001 * 109.46755 * 210.00116 * 1 2 3 29 29 H 1.09003 * 109.46562 * 329.99852 * 1 2 3 30 30 H 1.07997 * 119.96124 * 0.02562 * 3 2 1 31 31 H 1.07993 * 120.03589 * 180.27911 * 4 3 2 32 32 H 1.08993 * 109.46905 * 195.58093 * 7 6 5 33 33 H 1.09003 * 109.46609 * 315.58098 * 7 6 5 34 34 H 0.96999 * 120.00309 * 180.02562 * 11 10 8 35 35 H 1.07996 * 120.43235 * 359.97438 * 19 18 16 36 36 H 1.07998 * 119.51359 * 180.22517 * 20 19 18 37 37 H 0.96702 * 114.00300 * 270.02239 * 23 22 21 38 38 H 1.07991 * 120.53205 * 179.97438 * 24 22 21 39 39 H 1.07998 * 120.03749 * 179.97438 * 25 5 4 40 40 H 1.07997 * 119.96910 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1985 0.0000 4 6 3.5780 1.2020 0.0052 5 6 4.2740 0.0000 0.0053 6 7 5.6723 -0.0001 0.0111 7 6 6.4041 -1.2577 0.1822 8 6 6.3542 -2.0464 -1.1010 9 1 5.8302 -1.6504 -1.9583 10 6 6.9784 -3.2733 -1.1807 11 7 7.6169 -3.7553 -0.1370 12 14 6.9160 -4.2513 -2.7710 13 1 6.1410 -3.4949 -3.7872 14 1 8.2970 -4.4757 -3.2685 15 1 6.2607 -5.5603 -2.5217 16 6 6.3469 1.1568 -0.1406 17 8 5.7412 2.2072 -0.2213 18 6 7.8265 1.1479 -0.2091 19 6 8.5185 0.0165 -0.6568 20 6 9.8968 0.0494 -0.7099 21 7 10.5651 1.1239 -0.3370 22 6 9.9541 2.2128 0.0965 23 8 10.6889 3.2914 0.4675 24 6 8.5686 2.2656 0.1767 25 6 3.5780 -1.2020 -0.0005 26 6 2.1969 -1.1985 -0.0057 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3632 0.8900 0.5139 30 1 1.6552 2.1327 0.0004 31 1 4.1162 2.1382 0.0098 32 1 7.4419 -1.0425 0.4362 33 1 5.9467 -1.8381 0.9835 34 1 8.0564 -4.6182 -0.1932 35 1 7.9804 -0.8696 -0.9595 36 1 10.4367 -0.8188 -1.0579 37 1 10.9383 3.2950 1.4018 38 1 8.0732 3.1570 0.5318 39 1 4.1161 -2.1383 -0.0008 40 1 1.6551 -2.1327 -0.0097 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760479845.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:43:08 Heat of formation + Delta-G solvation = 21.314811 kcal Electronic energy + Delta-G solvation = -25532.641668 eV Core-core repulsion = 21893.154752 eV Total energy + Delta-G solvation = -3639.486916 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.86309 -39.68288 -38.06885 -36.82340 -35.75277 -33.24534 -32.57513 -31.16272 -30.38089 -29.93416 -27.85523 -26.44127 -24.17955 -23.43860 -23.15187 -21.83657 -21.16079 -19.82974 -18.24734 -17.20937 -16.97321 -16.42009 -15.92281 -15.89113 -15.47053 -14.87663 -14.79082 -14.48191 -14.23670 -13.84764 -13.53171 -13.42565 -13.08402 -12.93056 -12.86485 -12.62474 -12.09082 -11.89753 -11.87610 -11.70889 -11.46496 -11.17624 -11.11761 -10.68346 -10.53966 -10.37877 -10.19001 -9.59142 -9.41960 -9.24010 -8.92199 -8.81420 -8.44488 -8.36879 -7.22733 -6.49834 -4.61899 0.96880 1.29560 1.86003 1.98151 3.06242 3.14207 3.17536 3.22854 3.34751 3.78347 4.08802 4.09570 4.40277 4.72560 4.80035 4.99807 5.27434 5.28412 5.32637 5.37418 5.55797 5.61182 5.78479 5.81859 5.91270 5.93411 6.07565 6.11112 6.17635 6.22714 6.47863 6.53488 6.66697 6.83832 6.89357 6.93346 6.95587 7.10257 7.22041 7.44045 7.59719 7.61365 7.73558 7.93498 8.12878 8.43923 8.57173 9.07081 10.53848 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.009967 B = 0.005884 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.614492 B = 4757.550286 C = 7233.537367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.126 4.126 3 C -0.110 4.110 4 C -0.173 4.173 5 C 0.160 3.840 6 N -0.522 5.522 7 C 0.203 3.797 8 C -0.551 4.551 9 H 0.071 0.929 10 C 0.073 3.927 11 N -0.875 5.875 12 Si 0.898 3.102 13 H -0.269 1.269 14 H -0.278 1.278 15 H -0.279 1.279 16 C 0.557 3.443 17 O -0.533 6.533 18 C -0.079 4.079 19 C -0.147 4.147 20 C 0.110 3.890 21 N -0.491 5.491 22 C 0.282 3.718 23 O -0.482 6.482 24 C -0.132 4.132 25 C -0.131 4.131 26 C -0.107 4.107 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.114 0.886 31 H 0.177 0.823 32 H 0.070 0.930 33 H 0.044 0.956 34 H 0.272 0.728 35 H 0.211 0.789 36 H 0.166 0.834 37 H 0.395 0.605 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.287 5.043 2.574 6.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.127 4.127 3 C -0.129 4.129 4 C -0.192 4.192 5 C 0.065 3.935 6 N -0.240 5.240 7 C 0.084 3.916 8 C -0.588 4.588 9 H 0.089 0.911 10 C -0.133 4.133 11 N -0.511 5.511 12 Si 0.724 3.276 13 H -0.193 1.193 14 H -0.203 1.203 15 H -0.205 1.205 16 C 0.348 3.652 17 O -0.414 6.414 18 C -0.090 4.090 19 C -0.165 4.165 20 C -0.046 4.046 21 N -0.210 5.210 22 C 0.103 3.897 23 O -0.288 6.288 24 C -0.154 4.154 25 C -0.151 4.151 26 C -0.126 4.126 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.132 0.868 31 H 0.193 0.807 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.227 0.773 36 H 0.183 0.817 37 H 0.251 0.749 38 H 0.162 0.838 39 H 0.164 0.836 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.558 5.613 2.019 6.491 hybrid contribution -0.701 -0.895 -0.271 1.169 sum -3.259 4.718 1.748 5.994 Atomic orbital electron populations 1.20674 0.92068 1.01900 1.01525 1.19819 0.95461 0.93547 1.03902 1.20878 0.93923 0.96831 1.01252 1.22686 0.94407 1.00104 1.02024 1.17977 0.82120 0.94376 0.99064 1.45781 1.04512 1.09683 1.64007 1.20480 0.93701 0.78872 0.98508 1.21390 1.35913 1.03452 0.98059 0.91082 1.24983 0.94266 0.96902 0.97140 1.69926 1.32517 1.19424 1.29213 0.86410 0.78417 0.79964 0.82796 1.19285 1.20326 1.20458 1.18309 0.86873 0.83257 0.76782 1.90358 1.67834 1.31970 1.51188 1.20123 0.93365 0.94696 1.00784 1.24400 0.96477 1.00947 0.94716 1.22583 0.91598 0.94496 0.95971 1.66965 1.43281 0.99900 1.10902 1.18880 0.86664 0.86268 0.97878 1.84801 1.73324 1.38619 1.32095 1.22095 0.93534 0.98966 1.00790 1.21241 0.93938 0.98078 1.01822 1.20764 0.93548 0.97062 1.01234 0.91995 0.92167 0.92259 0.86773 0.80683 0.91307 0.93806 0.91838 0.77292 0.81717 0.74903 0.83807 0.83605 0.86466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.23 10.01 36.00 0.36 -0.87 16 2 C -0.13 -1.95 5.88 -104.58 -0.62 -2.57 16 3 C -0.11 -1.81 9.69 -39.61 -0.38 -2.19 16 4 C -0.17 -3.29 9.04 -39.39 -0.36 -3.65 16 5 C 0.16 3.24 6.41 -83.72 -0.54 2.70 16 6 N -0.52 -10.82 2.73 -115.69 -0.32 -11.14 16 7 C 0.20 4.37 4.03 -5.19 -0.02 4.35 16 8 C -0.55 -12.56 5.79 -34.44 -0.20 -12.76 16 9 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 10 C 0.07 1.69 5.38 -17.82 -0.10 1.60 16 11 N -0.88 -20.97 13.29 55.43 0.74 -20.24 16 12 Si 0.90 18.50 29.54 -169.99 -5.02 13.47 16 13 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 14 H -0.28 -5.68 7.11 56.52 0.40 -5.27 16 15 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 16 C 0.56 11.33 7.47 -12.20 -0.09 11.24 16 17 O -0.53 -11.20 13.13 5.35 0.07 -11.13 16 18 C -0.08 -1.47 5.54 -104.68 -0.58 -2.05 16 19 C -0.15 -2.73 7.55 -39.03 -0.29 -3.03 16 20 C 0.11 1.88 11.17 -17.61 -0.20 1.69 16 21 N -0.49 -8.52 10.36 -13.38 -0.14 -8.66 16 22 C 0.28 4.59 7.74 -17.17 -0.13 4.46 16 23 O -0.48 -6.59 13.56 -18.76 -0.25 -6.84 16 24 C -0.13 -2.20 9.62 -38.84 -0.37 -2.58 16 25 C -0.13 -2.51 8.87 -39.39 -0.35 -2.86 16 26 C -0.11 -1.78 9.69 -39.61 -0.38 -2.16 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 29 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 30 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 31 H 0.18 3.49 4.56 -56.11 -0.26 3.24 16 32 H 0.07 1.49 4.27 -51.93 -0.22 1.27 16 33 H 0.04 1.01 7.43 -51.93 -0.39 0.62 16 34 H 0.27 6.22 8.31 -40.82 -0.34 5.88 16 35 H 0.21 4.32 3.26 -52.49 -0.17 4.15 16 36 H 0.17 2.47 8.06 -52.49 -0.42 2.05 16 37 H 0.39 3.27 9.06 45.56 0.41 3.68 16 38 H 0.14 2.21 7.94 -52.49 -0.42 1.79 16 39 H 0.15 2.97 5.90 -52.49 -0.31 2.66 16 40 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 334.82 15.07 5.05 5.05 Total: -1.00 -26.82 334.82 -7.55 -34.37 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -3.42 Total: 13.79 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -4.25 Total: -8.68 kcal Atomic # 7 Polarization: -40.32 SS G_CDS: 0.28 Total: -40.03 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.18 Total: -17.97 kcal Atomic # 14 Polarization: 18.50 SS G_CDS: -5.02 Total: 13.47 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -26.82 -7.55 -34.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760479845.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.687 kcal (2) G-P(sol) polarization free energy of solvation -26.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds