Wall clock time and date at job start Fri Apr 10 2020 22:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38289 * 119.93090 * 2 1 4 4 C 1.38106 * 120.07580 * 179.74913 * 3 2 1 5 5 C 1.38895 * 119.92635 * 0.24780 * 4 3 2 6 6 N 1.39833 * 120.07215 * 180.02562 * 5 4 3 7 7 C 1.46509 * 119.99887 * 172.25517 * 6 5 4 8 8 C 1.50699 * 109.46777 * 75.58109 * 7 6 5 9 9 H 1.07997 * 120.00471 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99470 * 179.97438 * 8 7 6 11 11 N 1.31509 * 120.00006 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00043 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46731 * 0.02562 * 12 10 8 14 14 H 1.48499 * 109.46811 * 119.99850 * 12 10 8 15 15 H 1.48493 * 109.47444 * 240.00564 * 12 10 8 16 16 C 1.34775 * 120.00243 * 352.25441 * 6 5 4 17 17 O 1.21520 * 119.99870 * 3.35969 * 16 6 5 18 18 C 1.48125 * 120.00135 * 183.35788 * 16 6 5 19 19 C 1.39981 * 120.89360 * 26.14870 * 18 16 6 20 20 C 1.37969 * 119.13350 * 179.79726 * 19 18 16 21 21 N 1.31917 * 120.97391 * 0.49276 * 20 19 18 22 22 C 1.32177 * 121.97617 * 359.73230 * 21 20 19 23 23 O 1.35686 * 119.61726 * 180.02562 * 22 21 20 24 24 C 1.38880 * 120.75844 * 0.02807 * 22 21 20 25 25 C 1.38894 * 119.85368 * 0.02562 * 5 4 3 26 26 C 1.38106 * 119.93081 * 359.97438 * 25 5 4 27 27 H 1.08997 * 109.47282 * 89.99821 * 1 2 3 28 28 H 1.09001 * 109.46755 * 210.00116 * 1 2 3 29 29 H 1.09003 * 109.46562 * 329.99852 * 1 2 3 30 30 H 1.07997 * 119.96124 * 0.02562 * 3 2 1 31 31 H 1.07993 * 120.03589 * 180.27911 * 4 3 2 32 32 H 1.08993 * 109.46905 * 195.58093 * 7 6 5 33 33 H 1.09003 * 109.46609 * 315.58098 * 7 6 5 34 34 H 0.96999 * 120.00309 * 180.02562 * 11 10 8 35 35 H 1.07996 * 120.43235 * 359.97438 * 19 18 16 36 36 H 1.07998 * 119.51359 * 180.22517 * 20 19 18 37 37 H 0.96702 * 114.00300 * 270.02239 * 23 22 21 38 38 H 1.07991 * 120.53205 * 179.97438 * 24 22 21 39 39 H 1.07998 * 120.03749 * 179.97438 * 25 5 4 40 40 H 1.07997 * 119.96910 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1985 0.0000 4 6 3.5780 1.2020 0.0052 5 6 4.2740 0.0000 0.0053 6 7 5.6723 -0.0001 0.0111 7 6 6.4041 -1.2577 0.1822 8 6 6.3542 -2.0464 -1.1010 9 1 5.8302 -1.6504 -1.9583 10 6 6.9784 -3.2733 -1.1807 11 7 7.6169 -3.7553 -0.1370 12 14 6.9160 -4.2513 -2.7710 13 1 6.1410 -3.4949 -3.7872 14 1 8.2970 -4.4757 -3.2685 15 1 6.2607 -5.5603 -2.5217 16 6 6.3469 1.1568 -0.1406 17 8 5.7412 2.2072 -0.2213 18 6 7.8265 1.1479 -0.2091 19 6 8.5185 0.0165 -0.6568 20 6 9.8968 0.0494 -0.7099 21 7 10.5651 1.1239 -0.3370 22 6 9.9541 2.2128 0.0965 23 8 10.6889 3.2914 0.4675 24 6 8.5686 2.2656 0.1767 25 6 3.5780 -1.2020 -0.0005 26 6 2.1969 -1.1985 -0.0057 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3632 0.8900 0.5139 30 1 1.6552 2.1327 0.0004 31 1 4.1162 2.1382 0.0098 32 1 7.4419 -1.0425 0.4362 33 1 5.9467 -1.8381 0.9835 34 1 8.0564 -4.6182 -0.1932 35 1 7.9804 -0.8696 -0.9595 36 1 10.4367 -0.8188 -1.0579 37 1 10.9383 3.2950 1.4018 38 1 8.0732 3.1570 0.5318 39 1 4.1161 -2.1383 -0.0008 40 1 1.6551 -2.1327 -0.0097 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760479845.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:43:08 Heat of formation + Delta-G solvation = 4.224121 kcal Electronic energy + Delta-G solvation = -25533.382776 eV Core-core repulsion = 21893.154752 eV Total energy + Delta-G solvation = -3640.228024 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.34439 -41.05518 -39.45469 -38.08847 -37.29779 -34.88789 -34.04697 -32.47460 -31.77913 -31.28177 -29.54261 -27.71075 -25.66863 -25.02583 -24.51529 -23.25767 -22.52146 -21.23973 -19.56691 -18.88504 -18.51414 -17.95398 -17.33939 -17.26870 -16.80815 -16.50889 -16.25363 -15.96342 -15.59473 -15.21142 -14.89404 -14.64098 -14.53288 -14.41148 -14.25888 -14.13398 -13.51038 -13.31548 -12.94755 -12.90970 -12.88785 -12.76410 -12.61248 -12.25411 -12.08455 -11.90085 -11.82898 -11.02332 -10.88054 -10.75614 -10.66558 -10.26958 -9.84878 -9.76808 -8.71470 -8.27321 -6.45306 -0.46613 -0.03589 0.47060 0.57961 1.40590 1.46836 1.54835 1.68064 1.85074 2.36163 2.52175 2.73499 2.98347 3.00562 3.22001 3.68924 3.93219 4.01678 4.07373 4.12444 4.29362 4.39859 4.48624 4.55151 4.61483 4.63783 4.79024 4.86930 4.92777 4.97782 5.06605 5.16957 5.20154 5.25372 5.48271 5.50952 5.56348 5.62272 5.70515 5.81510 5.86867 6.29537 6.33895 6.57694 6.66763 6.82243 6.94609 7.25624 8.75197 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.009967 B = 0.005884 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2808.614492 B = 4757.550286 C = 7233.537367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.117 4.117 3 C -0.110 4.110 4 C -0.187 4.187 5 C 0.127 3.873 6 N -0.526 5.526 7 C 0.219 3.781 8 C -0.546 4.546 9 H 0.053 0.947 10 C 0.044 3.956 11 N -0.898 5.898 12 Si 0.949 3.051 13 H -0.276 1.276 14 H -0.270 1.270 15 H -0.278 1.278 16 C 0.550 3.450 17 O -0.546 6.546 18 C -0.089 4.089 19 C -0.161 4.161 20 C 0.116 3.884 21 N -0.500 5.500 22 C 0.295 3.705 23 O -0.482 6.482 24 C -0.130 4.130 25 C -0.147 4.147 26 C -0.108 4.108 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.143 0.857 31 H 0.166 0.834 32 H 0.070 0.930 33 H 0.022 0.978 34 H 0.275 0.725 35 H 0.191 0.809 36 H 0.184 0.816 37 H 0.421 0.579 38 H 0.157 0.843 39 H 0.125 0.875 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.187 5.652 2.432 7.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.118 4.118 3 C -0.128 4.128 4 C -0.206 4.206 5 C 0.033 3.967 6 N -0.245 5.245 7 C 0.100 3.900 8 C -0.584 4.584 9 H 0.072 0.928 10 C -0.160 4.160 11 N -0.535 5.535 12 Si 0.774 3.226 13 H -0.201 1.201 14 H -0.195 1.195 15 H -0.204 1.204 16 C 0.342 3.658 17 O -0.427 6.427 18 C -0.100 4.100 19 C -0.180 4.180 20 C -0.040 4.040 21 N -0.220 5.220 22 C 0.116 3.884 23 O -0.292 6.292 24 C -0.152 4.152 25 C -0.167 4.167 26 C -0.127 4.127 27 H 0.094 0.906 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.161 0.839 31 H 0.182 0.818 32 H 0.087 0.913 33 H 0.040 0.960 34 H 0.084 0.916 35 H 0.208 0.792 36 H 0.201 0.799 37 H 0.282 0.718 38 H 0.175 0.825 39 H 0.143 0.857 40 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.458 6.227 1.901 7.373 hybrid contribution -0.476 -0.984 -0.178 1.107 sum -3.934 5.243 1.723 6.778 Atomic orbital electron populations 1.20749 0.88689 1.03592 1.02883 1.20277 0.97802 0.92482 1.01255 1.21230 0.92926 0.98654 0.99985 1.22674 0.95760 0.99102 1.03095 1.18286 0.82012 0.95379 1.01073 1.45766 1.05026 1.09410 1.64255 1.20194 0.93508 0.79044 0.97259 1.21298 1.35543 1.03782 0.97792 0.92835 1.25466 0.93963 0.97413 0.99184 1.69982 1.33244 1.19855 1.30437 0.85629 0.78457 0.78579 0.79892 1.20107 1.19524 1.20368 1.18607 0.87658 0.83000 0.76560 1.90345 1.68327 1.32113 1.51963 1.20127 0.92544 0.95648 1.01695 1.24133 0.97176 1.00384 0.96325 1.22799 0.90946 0.95125 0.95171 1.67078 1.43248 1.00224 1.11401 1.18959 0.86647 0.86288 0.96496 1.84747 1.72734 1.37251 1.34435 1.22204 0.93791 0.98707 1.00464 1.21198 0.95273 0.96897 1.03378 1.21095 0.92500 0.98900 1.00189 0.90613 0.90665 0.90511 0.83908 0.81782 0.91258 0.96017 0.91579 0.79246 0.79901 0.71847 0.82512 0.85686 0.84007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.00 10.01 71.23 0.71 -1.29 16 2 C -0.12 -3.36 5.88 -19.84 -0.12 -3.48 16 3 C -0.11 -3.43 9.69 22.25 0.22 -3.21 16 4 C -0.19 -7.20 9.04 22.40 0.20 -7.00 16 5 C 0.13 5.33 6.41 38.18 0.24 5.58 16 6 N -0.53 -22.92 2.73 -638.23 -1.74 -24.66 16 7 C 0.22 9.95 4.03 85.63 0.34 10.30 16 8 C -0.55 -25.96 5.79 25.60 0.15 -25.81 16 9 H 0.05 2.70 7.81 -2.91 -0.02 2.67 16 10 C 0.04 2.06 5.38 84.66 0.46 2.51 16 11 N -0.90 -43.87 13.29 21.45 0.28 -43.58 16 12 Si 0.95 38.33 29.54 68.60 2.03 40.35 16 13 H -0.28 -11.41 7.11 99.48 0.71 -10.71 16 14 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 15 H -0.28 -11.14 7.11 99.48 0.71 -10.44 16 16 C 0.55 23.20 7.47 86.87 0.65 23.85 16 17 O -0.55 -23.57 13.13 -3.78 -0.05 -23.62 16 18 C -0.09 -3.41 5.54 -19.90 -0.11 -3.52 16 19 C -0.16 -6.14 7.55 22.63 0.17 -5.97 16 20 C 0.12 3.92 11.17 84.62 0.94 4.86 16 21 N -0.50 -16.70 10.36 -309.15 -3.20 -19.91 16 22 C 0.30 9.17 7.74 84.79 0.66 9.83 16 23 O -0.48 -11.97 13.56 -90.05 -1.22 -13.19 16 24 C -0.13 -4.26 9.62 22.75 0.22 -4.04 16 25 C -0.15 -5.82 8.87 22.40 0.20 -5.63 16 26 C -0.11 -3.48 9.69 22.25 0.22 -3.27 16 27 H 0.08 1.33 8.14 -2.39 -0.02 1.32 16 28 H 0.07 1.28 8.09 -2.39 -0.02 1.26 16 29 H 0.08 1.27 8.08 -2.39 -0.02 1.25 16 30 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 31 H 0.17 6.70 4.56 -60.20 -0.27 6.43 16 32 H 0.07 3.16 4.27 -2.39 -0.01 3.15 16 33 H 0.02 1.07 7.43 -2.39 -0.02 1.05 16 34 H 0.27 12.68 8.31 -92.71 -0.77 11.91 16 35 H 0.19 8.13 3.26 -2.91 -0.01 8.12 16 36 H 0.18 5.37 8.06 -2.91 -0.02 5.34 16 37 H 0.42 5.75 9.06 -74.06 -0.67 5.08 16 38 H 0.16 4.67 7.94 -2.92 -0.02 4.65 16 39 H 0.13 5.39 5.90 -2.91 -0.02 5.38 16 40 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -58.38 334.82 1.42 -56.96 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: 0.18 Total: 33.92 kcal Atomic # 6 Polarization: -11.43 SS G_CDS: 5.15 Total: -6.28 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -4.66 Total: -88.15 kcal Atomic # 8 Polarization: -35.53 SS G_CDS: -1.27 Total: -36.81 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 2.03 Total: 40.35 kcal Total: -58.38 1.42 -56.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760479845.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.188 kcal (2) G-P(sol) polarization free energy of solvation -58.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds