Wall clock time and date at job start Fri Apr 10 2020 22:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99689 * 2 1 4 4 H 1.48496 * 109.47443 * 269.99792 * 3 2 1 5 5 H 1.48498 * 109.47474 * 30.00656 * 3 2 1 6 6 H 1.48498 * 109.46751 * 150.00206 * 3 2 1 7 7 C 1.37869 * 120.00199 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00291 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99829 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47079 * 180.02562 * 9 7 2 11 11 O 1.42904 * 109.47339 * 179.97438 * 10 9 7 12 12 C 1.35905 * 117.00345 * 179.97438 * 11 10 9 13 13 C 1.38885 * 119.97163 * 0.02608 * 12 11 10 14 14 C 1.38270 * 120.27033 * 179.97438 * 13 12 11 15 15 C 1.37963 * 120.22383 * 359.97438 * 14 13 12 16 16 C 1.39750 * 119.94768 * 0.02562 * 15 14 13 17 17 C 1.47368 * 120.13452 * 180.02562 * 16 15 14 18 18 C 1.34332 * 120.00313 * 313.50790 * 17 16 15 19 19 C 1.47246 * 119.99690 * 345.51433 * 18 17 16 20 20 N 1.32905 * 119.22849 * 353.00430 * 19 18 17 21 21 C 1.32280 * 120.85394 * 179.71897 * 20 19 18 22 22 C 1.38389 * 119.30551 * 0.53900 * 21 20 19 23 23 C 1.39518 * 118.57673 * 359.73613 * 22 21 20 24 24 O 1.35517 * 120.45164 * 180.02562 * 23 22 21 25 25 N 1.32620 * 119.10480 * 359.97438 * 23 22 21 26 26 C 1.38405 * 119.97709 * 179.97438 * 12 11 10 27 27 H 0.97001 * 120.00098 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47693 * 59.99798 * 9 7 2 29 29 H 1.09000 * 109.47228 * 299.99856 * 9 7 2 30 30 H 1.08998 * 109.47715 * 59.99872 * 10 9 7 31 31 H 1.09001 * 109.47143 * 299.99696 * 10 9 7 32 32 H 1.07994 * 119.86921 * 359.97234 * 13 12 11 33 33 H 1.08000 * 119.88701 * 180.02562 * 14 13 12 34 34 H 1.08003 * 120.02761 * 180.27078 * 15 14 13 35 35 H 1.08003 * 119.99696 * 133.51370 * 17 16 15 36 36 H 1.07995 * 119.99868 * 165.51185 * 18 17 16 37 37 H 1.07995 * 120.34796 * 180.25270 * 21 20 19 38 38 H 1.07995 * 120.71443 * 179.70673 * 22 21 20 39 39 H 0.96703 * 113.99913 * 269.98153 * 24 23 22 40 40 H 1.08008 * 120.10639 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 8 1.5308 -4.8996 0.0001 12 6 2.2710 -6.0394 -0.0004 13 6 3.6579 -5.9661 -0.0009 14 6 4.4170 -7.1218 -0.0008 15 6 3.8019 -8.3567 0.0003 16 6 2.4069 -8.4412 0.0007 17 6 1.7456 -9.7582 0.0024 18 6 2.1596 -10.7189 -0.8403 19 6 3.0393 -10.3775 -1.9707 20 7 3.3010 -9.0999 -2.2265 21 6 4.0913 -8.7571 -3.2304 22 6 4.6408 -9.7456 -4.0279 23 6 4.3440 -11.0779 -3.7391 24 8 4.8620 -12.0764 -4.4949 25 7 3.5489 -11.3541 -2.7142 26 6 1.6421 -7.2724 0.0007 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8902 29 1 0.6247 -2.5571 0.8897 30 1 2.8720 -3.6043 0.8894 31 1 2.8719 -3.6043 -0.8906 32 1 4.1455 -5.0025 -0.0013 33 1 5.4951 -7.0575 -0.0007 34 1 4.3979 -9.2573 0.0047 35 1 0.9279 -9.9509 0.6812 36 1 1.8473 -11.7415 -0.6887 37 1 4.3017 -7.7165 -3.4284 38 1 5.2853 -9.4912 -4.8563 39 1 4.3100 -12.3258 -5.2487 40 1 0.5636 -7.3304 0.0015 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764433119.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:43:11 Heat of formation + Delta-G solvation = 23.645039 kcal Electronic energy + Delta-G solvation = -24115.869588 eV Core-core repulsion = 20476.483718 eV Total energy + Delta-G solvation = -3639.385870 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.36930 -39.63775 -38.17538 -37.19046 -34.59617 -33.50328 -33.29353 -31.35919 -30.71787 -29.51691 -28.77604 -25.31218 -24.72552 -24.43035 -22.69330 -22.10657 -20.97175 -19.97025 -18.77951 -18.18864 -17.40629 -16.42900 -16.25169 -15.82216 -15.59713 -15.45107 -15.28226 -15.15905 -14.50179 -14.29889 -14.21921 -13.69045 -13.60116 -12.88860 -12.60429 -12.47237 -12.45898 -12.29937 -11.63102 -11.38776 -11.27519 -10.96967 -10.93449 -10.73678 -10.63362 -10.55427 -10.40263 -9.86629 -9.64589 -9.50125 -9.29269 -9.18955 -8.45345 -8.26117 -7.55453 -6.10199 -4.14728 0.12519 0.73302 1.32647 1.81305 2.23238 2.98130 3.27034 3.33116 3.35909 3.61180 3.73706 3.88757 4.11218 4.13893 4.41093 4.60400 4.75299 4.82276 4.94322 5.10391 5.24916 5.26222 5.31210 5.37860 5.47064 5.71829 5.77300 5.97372 6.04850 6.06531 6.07977 6.12235 6.32411 6.60190 6.61622 6.69877 6.77241 6.79763 6.97223 7.05972 7.52609 7.65486 7.81883 7.83345 8.11777 8.24988 8.91013 9.49547 11.01391 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.023431 B = 0.002485 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.719574 B =11264.473204 C =11849.016734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.067 3.933 11 O -0.318 6.318 12 C 0.141 3.859 13 C -0.205 4.205 14 C -0.089 4.089 15 C -0.112 4.112 16 C -0.012 4.012 17 C -0.031 4.031 18 C -0.124 4.124 19 C 0.369 3.631 20 N -0.486 5.486 21 C 0.164 3.836 22 C -0.250 4.250 23 C 0.355 3.645 24 O -0.479 6.479 25 N -0.537 5.537 26 C -0.139 4.139 27 H 0.263 0.737 28 H 0.027 0.973 29 H 0.027 0.973 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.126 0.874 33 H 0.114 0.886 34 H 0.102 0.898 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.172 0.828 38 H 0.150 0.850 39 H 0.406 0.594 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.727 -23.274 -6.047 25.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.564 4.564 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.007 4.007 11 O -0.232 6.232 12 C 0.094 3.906 13 C -0.223 4.223 14 C -0.107 4.107 15 C -0.131 4.131 16 C -0.012 4.012 17 C -0.052 4.052 18 C -0.143 4.143 19 C 0.106 3.894 20 N -0.200 5.200 21 C -0.001 4.001 22 C -0.274 4.274 23 C 0.167 3.833 24 O -0.286 6.286 25 N -0.262 5.262 26 C -0.158 4.158 27 H 0.073 0.927 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.144 0.856 33 H 0.132 0.868 34 H 0.120 0.880 35 H 0.158 0.842 36 H 0.162 0.838 37 H 0.189 0.811 38 H 0.167 0.833 39 H 0.265 0.735 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.293 -23.371 -5.017 24.992 hybrid contribution 1.070 1.092 -1.290 2.001 sum 8.363 -22.279 -6.307 24.619 Atomic orbital electron populations 1.69975 1.06097 1.26946 1.49759 1.24987 0.94899 0.99365 0.94951 0.86496 0.79752 0.82987 0.78203 1.20513 1.21051 1.19773 1.20973 0.93029 0.90251 1.52144 0.92401 1.19120 0.94197 0.89067 0.98826 1.23278 0.96981 0.80932 0.99508 1.86165 1.36519 1.13180 1.87294 1.18983 0.90017 0.87293 0.94280 1.21336 0.93111 0.99488 1.08410 1.20626 0.98892 0.91855 0.99375 1.20652 0.93007 0.96657 1.02822 1.18415 0.92827 0.91539 0.98448 1.22398 0.95442 0.91485 0.95895 1.21463 0.99487 0.99776 0.93604 1.21575 0.91201 0.83529 0.93063 1.69249 1.15376 1.18947 1.16464 1.23280 0.89083 1.00575 0.87203 1.23003 1.06081 0.93376 1.04916 1.19353 0.88703 0.86312 0.88951 1.84729 1.47065 1.53889 1.42945 1.68046 1.11566 1.38988 1.07566 1.20366 0.99727 0.89073 1.06663 0.92717 0.95447 0.95427 0.93262 0.93286 0.85619 0.86797 0.88020 0.84172 0.83812 0.81057 0.83251 0.73489 0.85579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.53 -14.62 9.11 -34.44 -0.31 -14.93 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.03 0.66 5.34 -27.88 -0.15 0.51 16 10 C 0.07 1.43 4.68 37.16 0.17 1.61 16 11 O -0.32 -6.53 10.13 -19.44 -0.20 -6.73 16 12 C 0.14 2.43 6.68 -39.28 -0.26 2.17 16 13 C -0.20 -3.16 9.03 -39.33 -0.36 -3.51 16 14 C -0.09 -1.17 10.02 -39.67 -0.40 -1.57 16 15 C -0.11 -1.43 6.65 -39.12 -0.26 -1.69 16 16 C -0.01 -0.15 4.14 -105.08 -0.44 -0.59 16 17 C -0.03 -0.30 9.76 -37.25 -0.36 -0.67 16 18 C -0.12 -1.22 9.95 -37.30 -0.37 -1.59 16 19 C 0.37 4.34 6.71 -156.89 -1.05 3.29 16 20 N -0.49 -5.82 5.56 -11.39 -0.06 -5.88 16 21 C 0.16 1.63 11.29 -17.30 -0.20 1.43 16 22 C -0.25 -2.14 10.12 -39.05 -0.40 -2.54 16 23 C 0.35 3.54 7.83 -16.73 -0.13 3.41 16 24 O -0.48 -3.80 13.57 -18.24 -0.25 -4.05 16 25 N -0.54 -6.32 10.40 -11.38 -0.12 -6.44 16 26 C -0.14 -2.08 9.73 -38.98 -0.38 -2.46 16 27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.05 1.01 7.66 -51.93 -0.40 0.61 16 31 H 0.05 1.00 7.66 -51.93 -0.40 0.60 16 32 H 0.13 1.93 6.28 -52.49 -0.33 1.60 16 33 H 0.11 1.27 8.06 -52.49 -0.42 0.84 16 34 H 0.10 1.24 7.48 -52.48 -0.39 0.85 16 35 H 0.14 1.00 8.06 -52.48 -0.42 0.57 16 36 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 38 H 0.15 0.88 8.06 -52.49 -0.42 0.46 16 39 H 0.41 1.10 9.06 45.56 0.41 1.51 16 40 H 0.13 1.77 8.06 -52.48 -0.42 1.35 16 LS Contribution 349.13 15.07 5.26 5.26 Total: -1.00 -33.60 349.13 -8.66 -42.26 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -4.03 Total: 0.62 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -4.99 Total: -15.53 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.55 Total: -38.02 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: -0.44 Total: -10.78 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.60 -8.66 -42.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764433119.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.908 kcal (2) G-P(sol) polarization free energy of solvation -33.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds