Wall clock time and date at job start Fri Apr 10 2020 22:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99689 * 2 1 4 4 H 1.48496 * 109.47443 * 269.99792 * 3 2 1 5 5 H 1.48498 * 109.47474 * 30.00656 * 3 2 1 6 6 H 1.48498 * 109.46751 * 150.00206 * 3 2 1 7 7 C 1.37869 * 120.00199 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00291 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99829 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47079 * 180.02562 * 9 7 2 11 11 O 1.42904 * 109.47339 * 179.97438 * 10 9 7 12 12 C 1.35905 * 117.00345 * 179.97438 * 11 10 9 13 13 C 1.38885 * 119.97163 * 0.02608 * 12 11 10 14 14 C 1.38270 * 120.27033 * 179.97438 * 13 12 11 15 15 C 1.37963 * 120.22383 * 359.97438 * 14 13 12 16 16 C 1.39750 * 119.94768 * 0.02562 * 15 14 13 17 17 C 1.47368 * 120.13452 * 180.02562 * 16 15 14 18 18 C 1.34332 * 120.00313 * 313.50790 * 17 16 15 19 19 C 1.47246 * 119.99690 * 345.51433 * 18 17 16 20 20 N 1.32905 * 119.22849 * 353.00430 * 19 18 17 21 21 C 1.32280 * 120.85394 * 179.71897 * 20 19 18 22 22 C 1.38389 * 119.30551 * 0.53900 * 21 20 19 23 23 C 1.39518 * 118.57673 * 359.73613 * 22 21 20 24 24 O 1.35517 * 120.45164 * 180.02562 * 23 22 21 25 25 N 1.32620 * 119.10480 * 359.97438 * 23 22 21 26 26 C 1.38405 * 119.97709 * 179.97438 * 12 11 10 27 27 H 0.97001 * 120.00098 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47693 * 59.99798 * 9 7 2 29 29 H 1.09000 * 109.47228 * 299.99856 * 9 7 2 30 30 H 1.08998 * 109.47715 * 59.99872 * 10 9 7 31 31 H 1.09001 * 109.47143 * 299.99696 * 10 9 7 32 32 H 1.07994 * 119.86921 * 359.97234 * 13 12 11 33 33 H 1.08000 * 119.88701 * 180.02562 * 14 13 12 34 34 H 1.08003 * 120.02761 * 180.27078 * 15 14 13 35 35 H 1.08003 * 119.99696 * 133.51370 * 17 16 15 36 36 H 1.07995 * 119.99868 * 165.51185 * 18 17 16 37 37 H 1.07995 * 120.34796 * 180.25270 * 21 20 19 38 38 H 1.07995 * 120.71443 * 179.70673 * 22 21 20 39 39 H 0.96703 * 113.99913 * 269.98153 * 24 23 22 40 40 H 1.08008 * 120.10639 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 8 1.5308 -4.8996 0.0001 12 6 2.2710 -6.0394 -0.0004 13 6 3.6579 -5.9661 -0.0009 14 6 4.4170 -7.1218 -0.0008 15 6 3.8019 -8.3567 0.0003 16 6 2.4069 -8.4412 0.0007 17 6 1.7456 -9.7582 0.0024 18 6 2.1596 -10.7189 -0.8403 19 6 3.0393 -10.3775 -1.9707 20 7 3.3010 -9.0999 -2.2265 21 6 4.0913 -8.7571 -3.2304 22 6 4.6408 -9.7456 -4.0279 23 6 4.3440 -11.0779 -3.7391 24 8 4.8620 -12.0764 -4.4949 25 7 3.5489 -11.3541 -2.7142 26 6 1.6421 -7.2724 0.0007 27 1 -0.4850 0.8400 0.0004 28 1 0.6240 -2.5567 -0.8902 29 1 0.6247 -2.5571 0.8897 30 1 2.8720 -3.6043 0.8894 31 1 2.8719 -3.6043 -0.8906 32 1 4.1455 -5.0025 -0.0013 33 1 5.4951 -7.0575 -0.0007 34 1 4.3979 -9.2573 0.0047 35 1 0.9279 -9.9509 0.6812 36 1 1.8473 -11.7415 -0.6887 37 1 4.3017 -7.7165 -3.4284 38 1 5.2853 -9.4912 -4.8563 39 1 4.3100 -12.3258 -5.2487 40 1 0.5636 -7.3304 0.0015 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764433119.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:43:10 Heat of formation + Delta-G solvation = 1.052724 kcal Electronic energy + Delta-G solvation = -24116.849264 eV Core-core repulsion = 20476.483718 eV Total energy + Delta-G solvation = -3640.365546 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.12930 -40.88394 -39.03303 -38.26754 -35.62757 -35.26999 -34.23819 -32.57648 -32.09178 -30.75560 -29.90822 -27.03290 -25.77327 -25.17186 -23.98421 -23.24008 -22.50533 -20.98188 -19.67266 -19.01670 -18.69189 -18.03409 -17.13345 -16.91068 -16.87826 -16.79309 -16.45116 -16.25761 -16.15135 -15.10762 -14.97910 -14.65873 -14.55801 -14.31618 -14.27346 -14.03833 -13.54032 -13.14694 -13.04281 -12.92869 -12.67326 -12.54542 -12.41405 -11.88711 -11.78586 -11.68235 -11.54586 -11.37279 -11.32337 -11.26981 -10.61008 -10.40312 -10.00635 -9.31995 -8.68822 -8.25579 -6.39101 -0.64789 -0.01518 0.37429 0.70220 1.35848 1.41518 1.43684 1.54819 2.30953 2.33493 2.56752 2.84405 3.00591 3.02531 3.08839 3.44439 3.83826 3.96784 3.99925 4.12727 4.22010 4.28333 4.31045 4.36199 4.38624 4.56901 4.59993 4.66211 4.77181 4.87370 5.10292 5.20797 5.30432 5.34117 5.40585 5.49508 5.52232 5.60653 5.70501 5.75425 5.96067 5.98060 6.10288 6.51970 6.66459 6.76086 7.04837 7.30999 8.87584 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.023431 B = 0.002485 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.719574 B =11264.473204 C =11849.016734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.975 3.025 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.545 4.545 8 H 0.070 0.930 9 C 0.028 3.972 10 C 0.087 3.913 11 O -0.343 6.343 12 C 0.107 3.893 13 C -0.213 4.213 14 C -0.084 4.084 15 C -0.103 4.103 16 C -0.001 4.001 17 C -0.039 4.039 18 C -0.116 4.116 19 C 0.350 3.650 20 N -0.510 5.510 21 C 0.153 3.847 22 C -0.237 4.237 23 C 0.348 3.652 24 O -0.484 6.484 25 N -0.556 5.556 26 C -0.150 4.150 27 H 0.267 0.733 28 H -0.002 1.002 29 H -0.002 1.002 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.123 0.877 33 H 0.138 0.862 34 H 0.112 0.888 35 H 0.170 0.830 36 H 0.166 0.834 37 H 0.185 0.815 38 H 0.178 0.822 39 H 0.427 0.573 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.825 -24.466 -6.627 27.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.799 3.201 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.582 4.582 8 H 0.088 0.912 9 C -0.009 4.009 10 C 0.013 3.987 11 O -0.258 6.258 12 C 0.062 3.938 13 C -0.232 4.232 14 C -0.102 4.102 15 C -0.122 4.122 16 C -0.001 4.001 17 C -0.061 4.061 18 C -0.135 4.135 19 C 0.087 3.913 20 N -0.225 5.225 21 C -0.012 4.012 22 C -0.260 4.260 23 C 0.160 3.840 24 O -0.295 6.295 25 N -0.281 5.281 26 C -0.169 4.169 27 H 0.075 0.925 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.141 0.859 33 H 0.156 0.844 34 H 0.130 0.870 35 H 0.187 0.813 36 H 0.184 0.816 37 H 0.202 0.798 38 H 0.195 0.805 39 H 0.290 0.710 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 9.404 -24.601 -5.623 26.930 hybrid contribution 0.445 1.229 -1.227 1.793 sum 9.848 -23.372 -6.851 26.271 Atomic orbital electron populations 1.70121 1.08045 1.28192 1.50701 1.26036 0.95816 1.03666 0.94208 0.85296 0.78582 0.77591 0.78667 1.19513 1.20697 1.18336 1.21396 0.93802 0.91042 1.52005 0.91155 1.18963 0.94570 0.91450 0.95931 1.22796 0.95267 0.80342 1.00295 1.86076 1.37451 1.13744 1.88548 1.19281 0.90907 0.86595 0.97017 1.21357 0.92440 1.00274 1.09140 1.20843 0.99954 0.91143 0.98288 1.20823 0.93142 0.96828 1.01374 1.18670 0.92975 0.92100 0.96385 1.22556 0.96393 0.89900 0.97213 1.21749 0.98387 1.00693 0.92665 1.21886 0.91942 0.83607 0.93821 1.69195 1.16329 1.19263 1.17747 1.23595 0.88885 1.01621 0.87125 1.23221 1.05356 0.92438 1.04943 1.19605 0.88286 0.87249 0.88872 1.84689 1.47666 1.53421 1.43720 1.68060 1.12376 1.39305 1.08356 1.20501 1.00111 0.89056 1.07256 0.92464 0.98392 0.98392 0.92446 0.92333 0.85930 0.84439 0.86990 0.81308 0.81648 0.79799 0.80471 0.70996 0.85494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.81 13.29 21.44 0.28 -56.53 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.98 43.45 29.54 68.60 2.03 45.48 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 7 C -0.54 -30.81 9.11 25.60 0.23 -30.58 16 8 H 0.07 3.71 7.74 -2.91 -0.02 3.69 16 9 C 0.03 1.54 5.34 29.85 0.16 1.70 16 10 C 0.09 3.86 4.68 71.98 0.34 4.20 16 11 O -0.34 -14.73 10.13 -92.48 -0.94 -15.67 16 12 C 0.11 3.76 6.68 22.46 0.15 3.91 16 13 C -0.21 -6.52 9.03 22.43 0.20 -6.32 16 14 C -0.08 -2.08 10.02 22.21 0.22 -1.86 16 15 C -0.10 -2.44 6.65 22.57 0.15 -2.29 16 16 C 0.00 -0.02 4.14 -20.16 -0.08 -0.11 16 17 C -0.04 -0.70 9.76 23.78 0.23 -0.47 16 18 C -0.12 -2.04 9.95 23.75 0.24 -1.81 16 19 C 0.35 7.67 6.71 137.03 0.92 8.59 16 20 N -0.51 -11.49 5.56 -189.94 -1.06 -12.55 16 21 C 0.15 2.76 11.29 84.66 0.96 3.71 16 22 C -0.24 -3.49 10.12 22.61 0.23 -3.26 16 23 C 0.35 6.22 7.83 84.88 0.66 6.89 16 24 O -0.48 -6.58 13.57 -88.19 -1.20 -7.77 16 25 N -0.56 -12.12 10.40 -302.69 -3.15 -15.27 16 26 C -0.15 -4.51 9.73 22.66 0.22 -4.29 16 27 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 28 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 29 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 30 H 0.06 2.40 7.66 -2.39 -0.02 2.38 16 31 H 0.06 2.43 7.66 -2.39 -0.02 2.41 16 32 H 0.12 3.74 6.28 -2.91 -0.02 3.72 16 33 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 34 H 0.11 2.47 7.48 -2.91 -0.02 2.45 16 35 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 36 H 0.17 2.13 8.06 -2.91 -0.02 2.10 16 37 H 0.19 2.68 8.06 -2.91 -0.02 2.66 16 38 H 0.18 1.51 8.06 -2.91 -0.02 1.49 16 39 H 0.43 1.32 9.06 -74.06 -0.67 0.65 16 40 H 0.13 3.66 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -74.17 349.13 1.67 -72.50 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: 0.40 Total: 11.26 kcal Atomic # 6 Polarization: -26.74 SS G_CDS: 5.29 Total: -21.45 kcal Atomic # 7 Polarization: -80.43 SS G_CDS: -3.92 Total: -84.35 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -2.13 Total: -23.44 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -74.17 1.67 -72.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764433119.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.553 kcal (2) G-P(sol) polarization free energy of solvation -74.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds