Wall clock time and date at job start Fri Apr 10 2020 22:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37962 * 119.58191 * 2 1 4 4 C 1.39395 * 119.07194 * 179.97438 * 3 2 1 5 5 N 1.39457 * 120.86272 * 180.02562 * 4 3 2 6 6 C 1.46503 * 119.99582 * 353.04574 * 5 4 3 7 7 C 1.34775 * 119.99891 * 173.03990 * 5 4 3 8 8 O 1.21588 * 120.00270 * 2.10639 * 7 5 4 9 9 C 1.47499 * 119.99809 * 182.09496 * 7 5 4 10 10 C 1.39688 * 120.19738 * 26.64081 * 9 7 5 11 11 C 1.37821 * 119.91838 * 179.97438 * 10 9 7 12 12 C 1.38575 * 120.32623 * 359.97438 * 11 10 9 13 13 C 1.38031 * 120.40317 * 0.02672 * 12 11 10 14 14 C 1.38834 * 120.07332 * 359.69195 * 13 12 11 15 15 O 1.35515 * 120.15806 * 180.27520 * 14 13 12 16 16 C 1.34810 * 117.00426 * 5.58634 * 15 14 13 17 17 H 1.07992 * 120.00012 * 5.16566 * 16 15 14 18 18 C 1.38708 * 119.99961 * 185.16345 * 16 15 14 19 19 N 1.31517 * 120.00105 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99821 * 179.97438 * 18 16 15 21 21 H 1.48509 * 109.46648 * 90.00424 * 20 18 16 22 22 H 1.48496 * 109.47346 * 210.00317 * 20 18 16 23 23 H 1.48498 * 109.47466 * 330.00396 * 20 18 16 24 24 C 1.39443 * 118.27837 * 0.02562 * 4 3 2 25 25 C 1.37919 * 119.07170 * 0.02562 * 24 4 3 26 26 N 1.31962 * 119.58110 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.47218 * 269.99506 * 1 2 3 28 28 H 1.08996 * 109.46901 * 30.00053 * 1 2 3 29 29 H 1.09000 * 109.46680 * 149.99673 * 1 2 3 30 30 H 1.07995 * 120.46223 * 0.02562 * 3 2 1 31 31 H 1.09007 * 109.47101 * 83.58245 * 6 5 4 32 32 H 1.09001 * 109.46939 * 203.57439 * 6 5 4 33 33 H 1.08995 * 109.47121 * 323.57875 * 6 5 4 34 34 H 1.08004 * 120.04248 * 359.97438 * 10 9 7 35 35 H 1.07995 * 119.83706 * 179.97438 * 11 10 9 36 36 H 1.07997 * 119.79945 * 179.97438 * 12 11 10 37 37 H 1.07996 * 119.96031 * 179.97438 * 13 12 11 38 38 H 0.97000 * 120.00211 * 179.97438 * 19 18 16 39 39 H 1.07997 * 120.46427 * 180.02562 * 24 4 3 40 40 H 1.07996 * 119.58010 * 180.02562 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1881 1.1998 0.0000 4 6 3.5820 1.1874 0.0005 5 7 4.3080 2.3781 0.0011 6 6 3.6140 3.6591 -0.1525 7 6 5.6480 2.3502 0.1431 8 8 6.2279 1.2853 0.2322 9 6 6.4110 3.6116 0.1900 10 6 5.8011 4.7853 0.6392 11 6 6.5196 5.9607 0.6812 12 6 7.8458 5.9848 0.2803 13 6 8.4617 4.8329 -0.1658 14 6 7.7554 3.6384 -0.2095 15 8 8.3600 2.5054 -0.6420 16 6 9.6799 2.5784 -0.9061 17 1 10.2241 3.4862 -0.6915 18 6 10.3391 1.4875 -1.4533 19 7 9.6764 0.3821 -1.7150 20 14 12.1680 1.5890 -1.8198 21 1 12.9367 1.1421 -0.6303 22 1 12.4906 0.7137 -2.9752 23 1 12.5306 2.9918 -2.1451 24 6 4.2317 -0.0465 0.0005 25 6 3.4773 -1.2010 -0.0006 26 7 2.1585 -1.1476 -0.0005 27 1 -0.3633 -0.0001 1.0276 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6488 2.1355 0.0004 31 1 3.2355 3.9857 0.8161 32 1 4.3083 4.4041 -0.5411 33 1 2.7821 3.5407 -0.8466 34 1 4.7678 4.7718 0.9532 35 1 6.0466 6.8674 1.0283 36 1 8.4007 6.9106 0.3164 37 1 9.4956 4.8599 -0.4770 38 1 10.1373 -0.3806 -2.0980 39 1 5.3104 -0.0973 0.0013 40 1 3.9719 -2.1611 -0.0002 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766607152.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:43:13 Heat of formation + Delta-G solvation = 41.076425 kcal Electronic energy + Delta-G solvation = -25357.390241 eV Core-core repulsion = 21718.760253 eV Total energy + Delta-G solvation = -3638.629988 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.88762 -39.51064 -38.34690 -36.64286 -35.61684 -32.69642 -32.47366 -31.86996 -29.85329 -29.16854 -27.71043 -26.92094 -25.55605 -24.02809 -22.62650 -22.02017 -21.27596 -19.54346 -18.22395 -17.38664 -16.91284 -16.69310 -15.76585 -15.63290 -15.24323 -14.98829 -14.59856 -14.34091 -14.10576 -14.04730 -13.77500 -13.73103 -13.15022 -13.01736 -12.78904 -12.64629 -12.39931 -12.23682 -12.12819 -11.78789 -11.56797 -11.40486 -11.11471 -10.97020 -10.71449 -10.54541 -10.45986 -9.76517 -9.51325 -8.99259 -8.71821 -8.62610 -8.35911 -8.06628 -7.45958 -6.58146 -4.17194 1.31612 1.45003 1.74485 2.16648 2.97927 3.05451 3.06326 3.11208 3.37995 3.83750 4.10528 4.39519 4.52612 4.73665 4.88107 4.97579 5.00874 5.11384 5.18992 5.30345 5.40636 5.43926 5.50915 5.57872 5.59279 5.64045 5.74501 5.83339 5.89617 5.98995 6.02967 6.22951 6.41208 6.45908 6.53423 6.70160 6.80787 6.90912 7.10195 7.15407 7.24775 7.54436 7.55584 7.81665 8.30297 8.63521 8.82920 9.50366 10.56203 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.014127 B = 0.004352 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.605403 B = 6431.562266 C = 8286.372966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.139 3.861 3 C -0.225 4.225 4 C 0.211 3.789 5 N -0.557 5.557 6 C 0.056 3.944 7 C 0.563 3.437 8 O -0.477 6.477 9 C -0.233 4.233 10 C -0.054 4.054 11 C -0.230 4.230 12 C -0.047 4.047 13 C -0.235 4.235 14 C 0.192 3.808 15 O -0.131 6.131 16 C -0.401 4.401 17 H 0.096 0.904 18 C 0.046 3.954 19 N -0.834 5.834 20 Si 0.943 3.057 21 H -0.271 1.271 22 H -0.275 1.275 23 H -0.266 1.266 24 C -0.221 4.221 25 C 0.119 3.881 26 N -0.515 5.515 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.131 0.869 31 H 0.066 0.934 32 H 0.106 0.894 33 H 0.071 0.929 34 H 0.132 0.868 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.134 0.866 38 H 0.274 0.726 39 H 0.192 0.808 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.074 7.055 2.669 14.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.000 4.000 3 C -0.248 4.248 4 C 0.106 3.894 5 N -0.279 5.279 6 C -0.086 4.086 7 C 0.357 3.643 8 O -0.350 6.350 9 C -0.238 4.238 10 C -0.073 4.073 11 C -0.249 4.249 12 C -0.066 4.066 13 C -0.254 4.254 14 C 0.132 3.868 15 O -0.029 6.029 16 C -0.477 4.477 17 H 0.113 0.887 18 C -0.163 4.163 19 N -0.465 5.465 20 Si 0.767 3.233 21 H -0.196 1.196 22 H -0.200 1.200 23 H -0.190 1.190 24 C -0.243 4.243 25 C -0.036 4.036 26 N -0.228 5.228 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.149 0.851 31 H 0.085 0.915 32 H 0.124 0.876 33 H 0.090 0.910 34 H 0.149 0.851 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.151 0.849 38 H 0.084 0.916 39 H 0.209 0.791 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -12.141 5.275 2.551 13.481 hybrid contribution 1.379 1.100 -0.195 1.775 sum -10.761 6.375 2.356 12.728 Atomic orbital electron populations 1.20638 0.89205 1.03023 1.02669 1.20920 0.96520 0.87862 0.94649 1.21480 0.92340 0.99811 1.11194 1.18251 0.90851 0.86439 0.93820 1.45362 1.07246 1.05530 1.69805 1.22636 0.98698 0.85439 1.01791 1.18527 0.79748 0.90068 0.75973 1.90558 1.67878 1.30380 1.46223 1.18526 0.93379 0.93204 1.18703 1.21452 0.99025 0.91399 0.95385 1.20511 0.95416 0.97597 1.11355 1.20958 0.94424 0.96976 0.94237 1.21169 1.01881 0.92388 1.09953 1.19195 0.90059 0.86887 0.90622 1.84085 1.23867 1.27314 1.67626 1.21489 0.80576 1.01956 1.43631 0.88688 1.25403 1.00719 0.94393 0.95745 1.70078 1.36792 1.02622 1.37040 0.85687 0.80105 0.78904 0.78612 1.19594 1.20037 1.19003 1.23691 1.06420 0.90743 1.03406 1.22698 0.88783 0.98466 0.93675 1.67472 1.10438 1.29010 1.15833 0.90780 0.91122 0.90685 0.85072 0.91523 0.87610 0.91047 0.85054 0.86988 0.86988 0.84876 0.91607 0.79142 0.82673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.98 10.17 36.01 0.37 -0.61 16 2 C 0.14 1.98 6.78 -82.64 -0.56 1.42 16 3 C -0.22 -3.20 8.86 -39.25 -0.35 -3.55 16 4 C 0.21 3.67 6.52 -83.51 -0.54 3.13 16 5 N -0.56 -9.57 3.09 -121.81 -0.38 -9.95 16 6 C 0.06 0.67 7.89 59.85 0.47 1.14 16 7 C 0.56 12.08 7.36 -12.49 -0.09 11.99 16 8 O -0.48 -12.15 12.09 -14.61 -0.18 -12.33 16 9 C -0.23 -4.82 5.51 -104.81 -0.58 -5.40 16 10 C -0.05 -0.87 7.48 -39.19 -0.29 -1.16 16 11 C -0.23 -3.46 10.02 -39.61 -0.40 -3.86 16 12 C -0.05 -0.78 10.03 -39.53 -0.40 -1.17 16 13 C -0.23 -4.77 9.13 -39.44 -0.36 -5.13 16 14 C 0.19 4.53 6.63 -38.59 -0.26 4.28 16 15 O -0.13 -3.68 8.17 -19.07 -0.16 -3.84 16 16 C -0.40 -10.90 9.45 30.91 0.29 -10.61 16 17 H 0.10 2.34 5.29 -52.49 -0.28 2.06 16 18 C 0.05 1.22 5.49 -17.51 -0.10 1.13 16 19 N -0.83 -24.20 13.67 55.48 0.76 -23.45 16 20 Si 0.94 19.87 29.55 -169.99 -5.02 14.85 16 21 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 22 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 23 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 24 C -0.22 -4.20 9.09 -39.25 -0.36 -4.56 16 25 C 0.12 2.01 11.17 -17.60 -0.20 1.82 16 26 N -0.51 -8.42 10.27 -9.56 -0.10 -8.52 16 27 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.13 1.44 6.64 -52.49 -0.35 1.09 16 31 H 0.07 0.63 7.29 -51.93 -0.38 0.25 16 32 H 0.11 1.28 4.87 -51.93 -0.25 1.03 16 33 H 0.07 0.70 6.96 -51.93 -0.36 0.34 16 34 H 0.13 1.64 4.53 -52.48 -0.24 1.40 16 35 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 37 H 0.13 2.67 5.71 -52.49 -0.30 2.38 16 38 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.19 4.24 4.71 -55.25 -0.26 3.98 16 40 H 0.16 2.26 8.06 -52.49 -0.42 1.83 16 LS Contribution 332.56 15.07 5.01 5.01 Total: -1.00 -33.33 332.56 -7.49 -40.82 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -4.08 Total: 8.55 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -3.34 Total: -11.14 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 0.28 Total: -41.92 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.33 Total: -16.17 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -33.33 -7.49 -40.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766607152.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.892 kcal (2) G-P(sol) polarization free energy of solvation -33.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds