Wall clock time and date at job start Fri Apr 10 2020 22:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37962 * 119.58191 * 2 1 4 4 C 1.39395 * 119.07194 * 179.97438 * 3 2 1 5 5 N 1.39457 * 120.86272 * 180.02562 * 4 3 2 6 6 C 1.46503 * 119.99582 * 353.04574 * 5 4 3 7 7 C 1.34775 * 119.99891 * 173.03990 * 5 4 3 8 8 O 1.21588 * 120.00270 * 2.10639 * 7 5 4 9 9 C 1.47499 * 119.99809 * 182.09496 * 7 5 4 10 10 C 1.39688 * 120.19738 * 26.64081 * 9 7 5 11 11 C 1.37821 * 119.91838 * 179.97438 * 10 9 7 12 12 C 1.38575 * 120.32623 * 359.97438 * 11 10 9 13 13 C 1.38031 * 120.40317 * 0.02672 * 12 11 10 14 14 C 1.38834 * 120.07332 * 359.69195 * 13 12 11 15 15 O 1.35515 * 120.15806 * 180.27520 * 14 13 12 16 16 C 1.34810 * 117.00426 * 5.58634 * 15 14 13 17 17 H 1.07992 * 120.00012 * 5.16566 * 16 15 14 18 18 C 1.38708 * 119.99961 * 185.16345 * 16 15 14 19 19 N 1.31517 * 120.00105 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99821 * 179.97438 * 18 16 15 21 21 H 1.48509 * 109.46648 * 90.00424 * 20 18 16 22 22 H 1.48496 * 109.47346 * 210.00317 * 20 18 16 23 23 H 1.48498 * 109.47466 * 330.00396 * 20 18 16 24 24 C 1.39443 * 118.27837 * 0.02562 * 4 3 2 25 25 C 1.37919 * 119.07170 * 0.02562 * 24 4 3 26 26 N 1.31962 * 119.58110 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.47218 * 269.99506 * 1 2 3 28 28 H 1.08996 * 109.46901 * 30.00053 * 1 2 3 29 29 H 1.09000 * 109.46680 * 149.99673 * 1 2 3 30 30 H 1.07995 * 120.46223 * 0.02562 * 3 2 1 31 31 H 1.09007 * 109.47101 * 83.58245 * 6 5 4 32 32 H 1.09001 * 109.46939 * 203.57439 * 6 5 4 33 33 H 1.08995 * 109.47121 * 323.57875 * 6 5 4 34 34 H 1.08004 * 120.04248 * 359.97438 * 10 9 7 35 35 H 1.07995 * 119.83706 * 179.97438 * 11 10 9 36 36 H 1.07997 * 119.79945 * 179.97438 * 12 11 10 37 37 H 1.07996 * 119.96031 * 179.97438 * 13 12 11 38 38 H 0.97000 * 120.00211 * 179.97438 * 19 18 16 39 39 H 1.07997 * 120.46427 * 180.02562 * 24 4 3 40 40 H 1.07996 * 119.58010 * 180.02562 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1881 1.1998 0.0000 4 6 3.5820 1.1874 0.0005 5 7 4.3080 2.3781 0.0011 6 6 3.6140 3.6591 -0.1525 7 6 5.6480 2.3502 0.1431 8 8 6.2279 1.2853 0.2322 9 6 6.4110 3.6116 0.1900 10 6 5.8011 4.7853 0.6392 11 6 6.5196 5.9607 0.6812 12 6 7.8458 5.9848 0.2803 13 6 8.4617 4.8329 -0.1658 14 6 7.7554 3.6384 -0.2095 15 8 8.3600 2.5054 -0.6420 16 6 9.6799 2.5784 -0.9061 17 1 10.2241 3.4862 -0.6915 18 6 10.3391 1.4875 -1.4533 19 7 9.6764 0.3821 -1.7150 20 14 12.1680 1.5890 -1.8198 21 1 12.9367 1.1421 -0.6303 22 1 12.4906 0.7137 -2.9752 23 1 12.5306 2.9918 -2.1451 24 6 4.2317 -0.0465 0.0005 25 6 3.4773 -1.2010 -0.0006 26 7 2.1585 -1.1476 -0.0005 27 1 -0.3633 -0.0001 1.0276 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6488 2.1355 0.0004 31 1 3.2355 3.9857 0.8161 32 1 4.3083 4.4041 -0.5411 33 1 2.7821 3.5407 -0.8466 34 1 4.7678 4.7718 0.9532 35 1 6.0466 6.8674 1.0283 36 1 8.4007 6.9106 0.3164 37 1 9.4956 4.8599 -0.4770 38 1 10.1373 -0.3806 -2.0980 39 1 5.3104 -0.0973 0.0013 40 1 3.9719 -2.1611 -0.0002 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766607152.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:43:12 Heat of formation + Delta-G solvation = 18.778474 kcal Electronic energy + Delta-G solvation = -25358.357153 eV Core-core repulsion = 21718.760253 eV Total energy + Delta-G solvation = -3639.596900 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 312.126 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.29286 -40.96329 -39.88676 -38.23314 -37.09065 -34.37869 -33.85727 -33.18391 -31.23101 -30.71806 -28.78159 -28.04451 -27.44847 -25.45271 -23.93340 -23.43489 -22.70896 -20.97278 -19.96693 -18.90156 -18.33151 -18.16890 -17.07162 -17.00791 -16.68864 -16.43865 -16.16286 -15.79195 -15.51896 -15.45918 -15.19001 -15.10233 -14.60009 -14.33336 -14.22357 -14.03473 -13.63359 -13.43974 -13.23737 -13.01131 -12.98196 -12.85942 -12.54439 -12.45315 -12.18765 -12.05031 -11.74389 -11.41990 -10.93456 -10.86347 -10.11383 -9.91734 -9.82423 -9.42487 -9.06614 -8.50581 -6.20630 -0.10543 0.17698 0.38099 0.67615 1.30710 1.41825 1.49396 1.64959 1.87877 2.12435 2.77842 2.86021 3.13907 3.32490 3.43060 3.48560 3.86199 3.89080 4.03564 4.14790 4.24117 4.25435 4.43433 4.47305 4.52603 4.55312 4.67949 4.77830 4.80155 4.86900 4.87681 4.92818 5.02867 5.08394 5.10534 5.29548 5.46054 5.48183 5.55005 5.66809 5.89129 5.91331 6.12368 6.21240 6.89959 7.03543 7.11600 7.71947 8.70351 Molecular weight = 312.13amu Principal moments of inertia in cm(-1) A = 0.014127 B = 0.004352 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.605403 B = 6431.562266 C = 8286.372966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.135 3.865 3 C -0.207 4.207 4 C 0.192 3.808 5 N -0.551 5.551 6 C 0.041 3.959 7 C 0.550 3.450 8 O -0.535 6.535 9 C -0.246 4.246 10 C -0.045 4.045 11 C -0.197 4.197 12 C -0.036 4.036 13 C -0.256 4.256 14 C 0.154 3.846 15 O -0.197 6.197 16 C -0.424 4.424 17 H 0.108 0.892 18 C -0.020 4.020 19 N -0.907 5.907 20 Si 1.021 2.979 21 H -0.264 1.264 22 H -0.272 1.272 23 H -0.245 1.245 24 C -0.258 4.258 25 C 0.115 3.885 26 N -0.527 5.527 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.074 0.926 30 H 0.178 0.822 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.178 0.822 35 H 0.169 0.831 36 H 0.155 0.845 37 H 0.124 0.876 38 H 0.272 0.728 39 H 0.149 0.851 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.654 11.911 3.825 20.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.003 4.003 3 C -0.229 4.229 4 C 0.088 3.912 5 N -0.273 5.273 6 C -0.098 4.098 7 C 0.344 3.656 8 O -0.413 6.413 9 C -0.251 4.251 10 C -0.062 4.062 11 C -0.215 4.215 12 C -0.054 4.054 13 C -0.276 4.276 14 C 0.099 3.901 15 O -0.100 6.100 16 C -0.499 4.499 17 H 0.125 0.875 18 C -0.220 4.220 19 N -0.543 5.543 20 Si 0.839 3.161 21 H -0.189 1.189 22 H -0.197 1.197 23 H -0.169 1.169 24 C -0.280 4.280 25 C -0.040 4.040 26 N -0.240 5.240 27 H 0.110 0.890 28 H 0.120 0.880 29 H 0.093 0.907 30 H 0.195 0.805 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.195 0.805 35 H 0.187 0.813 36 H 0.173 0.827 37 H 0.142 0.858 38 H 0.081 0.919 39 H 0.166 0.834 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -15.795 10.231 3.729 19.185 hybrid contribution 2.056 -0.073 -0.382 2.093 sum -13.739 10.158 3.347 17.411 Atomic orbital electron populations 1.20786 0.85455 1.04632 1.04264 1.21820 0.98837 0.87246 0.92400 1.21872 0.90436 1.01747 1.08894 1.18497 0.92363 0.85777 0.94562 1.45380 1.05948 1.07446 1.68496 1.23079 0.99125 0.82780 1.04837 1.18942 0.81418 0.89708 0.75556 1.90594 1.69685 1.32311 1.48692 1.18986 0.92666 0.94799 1.18653 1.22024 1.01091 0.89705 0.93424 1.21249 0.94353 0.98960 1.06987 1.21501 0.95455 0.96823 0.91653 1.21308 1.01831 0.92929 1.11503 1.19995 0.91763 0.87358 0.91011 1.84085 1.24299 1.29943 1.71658 1.21986 0.81359 1.02675 1.43908 0.87479 1.26728 1.06099 0.93690 0.95448 1.70269 1.39120 1.03977 1.40933 0.84571 0.73278 0.79785 0.78431 1.18930 1.19703 1.16856 1.23397 1.04781 0.93185 1.06624 1.22762 0.89396 0.98219 0.93652 1.67583 1.09567 1.30512 1.16337 0.88961 0.87986 0.90684 0.80491 0.87564 0.87716 0.88119 0.80491 0.81325 0.82701 0.85849 0.91920 0.83376 0.81978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.47 10.17 71.24 0.72 -0.74 16 2 C 0.13 3.51 6.78 42.47 0.29 3.80 16 3 C -0.21 -5.22 8.86 22.48 0.20 -5.02 16 4 C 0.19 6.69 6.52 38.50 0.25 6.94 16 5 N -0.55 -18.58 3.09 -657.56 -2.03 -20.60 16 6 C 0.04 0.79 7.89 127.77 1.01 1.79 16 7 C 0.55 24.85 7.36 86.69 0.64 25.49 16 8 O -0.54 -30.43 12.09 15.03 0.18 -30.24 16 9 C -0.25 -10.28 5.51 -19.99 -0.11 -10.39 16 10 C -0.04 -1.24 7.48 22.52 0.17 -1.07 16 11 C -0.20 -4.70 10.02 22.25 0.22 -4.48 16 12 C -0.04 -1.04 10.03 22.30 0.22 -0.82 16 13 C -0.26 -10.47 9.13 22.36 0.20 -10.26 16 14 C 0.15 7.64 6.63 22.91 0.15 7.79 16 15 O -0.20 -12.23 8.17 -0.94 -0.01 -12.24 16 16 C -0.42 -25.11 9.45 67.93 0.64 -24.47 16 17 H 0.11 5.68 5.29 -2.91 -0.02 5.67 16 18 C -0.02 -1.19 5.49 84.85 0.47 -0.72 16 19 N -0.91 -58.41 13.67 21.62 0.30 -58.11 16 20 Si 1.02 43.62 29.55 68.60 2.03 45.65 16 21 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 23 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 24 C -0.26 -10.68 9.09 22.48 0.20 -10.47 16 25 C 0.11 4.15 11.17 84.59 0.95 5.09 16 26 N -0.53 -17.09 10.27 -184.15 -1.89 -18.98 16 27 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.10 0.99 8.08 -2.39 -0.02 0.97 16 29 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.18 2.74 6.64 -2.91 -0.02 2.72 16 31 H 0.11 1.26 7.29 -2.38 -0.02 1.24 16 32 H 0.10 2.05 4.87 -2.39 -0.01 2.04 16 33 H 0.10 1.40 6.96 -2.39 -0.02 1.38 16 34 H 0.18 3.26 4.53 -2.91 -0.01 3.25 16 35 H 0.17 2.36 8.06 -2.91 -0.02 2.34 16 36 H 0.16 3.18 8.06 -2.91 -0.02 3.16 16 37 H 0.12 5.15 5.71 -2.91 -0.02 5.13 16 38 H 0.27 16.07 8.31 -92.71 -0.77 15.30 16 39 H 0.15 7.61 4.71 -46.71 -0.22 7.39 16 40 H 0.16 5.28 8.06 -2.91 -0.02 5.25 16 Total: -1.00 -89.00 332.56 5.69 -83.31 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: 0.89 Total: 28.77 kcal Atomic # 6 Polarization: -23.78 SS G_CDS: 6.23 Total: -17.55 kcal Atomic # 7 Polarization: -94.07 SS G_CDS: -3.63 Total: -97.69 kcal Atomic # 8 Polarization: -42.66 SS G_CDS: 0.17 Total: -42.48 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -89.00 5.69 -83.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766607152.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.089 kcal (2) G-P(sol) polarization free energy of solvation -89.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds